Archive for the ‘Hot Articles’ Category

Inducing Supramolecular Chirality from Afar with Allostery

Aristotle’s saying “the whole is more than the sum of its parts” is often well-exemplified in supramolecular chemistry – the result of non-covalent interactions present in a complex assembly of simple building blocks often generate novel properties that would not otherwise be present in a simple mixture of the components. The design of systems that exhibit these emergent phenomena is therefore an aim of many supramolecular chemists, including researchers from India who have achieved the control of supramolecular helicity in a bistable artificial self-assembled system through the addition of either a chiral or achiral component. This example of allosteric regulation in a synthetic system is an interesting analogue of that which occurs in biological systems, and offers an attractive approach to inducing not only conformational change in a pre-formed assembly, but also new chemical properties that could not otherwise be observed.

In biological systems, allosteric regulation, the binding of a secondary molecule to an enzyme, is employed to modulate the conformation of the active site and thus the effectiveness of an enzyme. This feature allows for communication between remote sites in a cell by providing a control loop in enzymes. It is therefore of interest to scientists to apply this allosteric regulation synthetically as a way of introducing a dynamic component to a molecular system.

Allosteric Regulation

Mohit Kumar and Subi George at the Jawaharlal Nehru Centre for Advanced Scientific Research[EB1] (JNCASR) in India have begun to experiment with the use of allostery in synthetic system[EB2] in order to induce [EB3] helicity in a polymeric supramolecular assembly comprised of a perylene bisimide functionalised at either end by a Zinc(II) motif that is known to bind phosphate ligands. In the “off” state this assembly exists as linear stacks of the molecule, such that overall the assembly is achiral. Upon the binding of 0.5 equivalents of chiral adenine trisphospate (ATP), a supramolecular reorganization is observed to form the helically dormant H1 state, which, upon the addition of further equivalents of ATP, results in a second conformational change to the helical H2, whereby the linear stacks are now twisted in nature and exhibit chirality. This example of chiral induction, in which a single molecule can turn “on” its chirality, exemplifies homotropic allosteric regulation. Furthermore, upon the addition of a second achiral pyrophosphate ligand (PPi) to H1, a different helical H2 state is induced in the assembly. The introduction of two chemically different molecules that interact with the assembly in different ways is an example of heterotropic allosteric regulation.

This use of supramolecular chemistry to post-synthetically elicit a change in a molecular assembly is an exciting way of mimicking the allostery observed in biology. Even more remarkable, is the ability of one system to respond in two different ways.

Read this HOT ChemSci article in full for free*!

Homotropic and heterotropic allosteric regulation of supramolecular chirality
Mohit Kumar and Subi B. George
DOI: 10.1039/C4SC00813H

About the Writer

Anthea Blackburn is a guest web writer for Chemical Science. Anthea is a graduate student hailing from New Zealand, studying at Northwestern University in the US under the tutelage of Prof. Fraser Stoddart (a Scot), where she is exploiting supramolecular chemistry to develop multidimensional systems and study the emergent properties that arise in these superstructures. When time and money allow, she is ambitiously attempting to visit all 50 US states before graduation.

*Access is free untill 06.06.14 through a registered RSC account – click here to register

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Hot Chemical Science articles for May

All of the referee-recommended articles below are free to access until 2nd June 2014

Functionalised staple linkages for modulating the cellular activity of stapled peptides
Yu Heng Lau, Peterson de Andrade, Soo-Tng Quah, Maxim Rossmann, Luca Laraia, Niklas Sköld, Tze Jing Sum, Pamela J. E. Rowling, Thomas L. Joseph, Chandra Verma, Marko Hyvönen, Laura S. Itzhaki, Ashok R. Venkitaraman, Christopher J. Brown, David P. Lane and David R. Spring  
Chem. Sci., 2014, 5, 1804-1809
DOI: 10.1039/C4SC00045E, Edge Article


Single molecule analysis of light-regulated RNA:spiropyran interactions
Xing Zhang, Junji Zhang, Yi-Lun Ying, He Tian and Yi-Tao Long  
Chem. Sci., 2014, Advance Article
DOI: 10.1039/C4SC00134F, Edge Article


Imine-Based Chiroptical Sensing for Analysis of Chiral Amines: From Method Design to Synthetic Application
Leo A Joyce, Edward Sherer and Christopher J Welch  
Chem. Sci., 2014, Accepted Manuscript
DOI: 10.1039/C4SC01006J, Edge Article

 


Decoding the infrared signatures of pyramidal carbons in graphenic molecular nanostructures of interstellar origin
Héctor Álvaro Galué  
Chem. Sci., 2014, Advance Article
DOI: 10.1039/C4SC00890A, Edge Article

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Shining a light on polymer welding

Chinese chemists have created an epoxy that can be rapidly hardened and reshaped by shining a light on it. Unlike traditional epoxies which are cured using heat, this approach uses carbon nanotubes to translate light energy into localised heat to set the epoxy. Shining additional light on the set polymer initiates self-healing and reshaping.


Read the full article in Chemistry World»

Read the original journal article in Chemical Science – it’s free to access until 17th June:
Carbon nanotube-Vitrimer composite for facile and efficient photo-welding of epoxy
Yang Yang, Zhiqiang Pei, Xiqi Zhang, lei tao, yen wei and Yan Ji  
Chem. Sci., 2014, Accepted Manuscript, DOI: 10.1039/C4SC00543K, Edge Article

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Unzipping DNA cubes, a triggered response

At the mention of DNA most people think of the storage of genetic information, but due to its biocompatibility and the ease with which it can be manipulated, it is becoming increasingly common for DNA to be used as a building material in nanotechnology.

DNA cages have attracted interest in the world of drug delivery as they can encapsulate small molecule drugs and are easily taken up by cells. The precision with which the size and shape of the cages can be controlled is another attractive aspect. Past studies have established that DNA cages can target cells, deliver encapsulated cargo and have a cytotoxic effect in cancer cells. However, specific control of the cellular delivery profile of DNA cages has not yet been achieved.

Sleinman and co-workers, from McGill University based in Montréal, Canada, have created dynamic DNA cubes which ‘unzip’ in a specific cellular environment. The cages are assembled from six DNA strands which make up the six sides of the cube and only disassemble in the presence of a trigger found in prostate cancer cells. The authors tested the uptake and disassembly, or ‘unzipping’, of their DNA cubes in vitro using three different mammalian cell lines.

Hydrophobic and hydrophilic dendritic chains were added to the cube after initial testing. It was determined that these chains coat the exterior of the cube and have a significant effect on the uptake of the structure. While the addition of hydrophobic chains to the cube increase uptake, addition of hydrophilic chains increase the stability of the cube in cellular environments.


One of the exciting aspects about this work is the scope for adaptation; the cubes could potentially be designed to respond to any nucleic acid sequence found specifically in diseased cells. Future work in the group will also look at encapsulating and delivering cargo, such as oligonucleotide drugs, using this new delivery system.


To download the full article for free* click the link below:

Sequence-responsive unzipping DNA cubes with tunable cellular uptake profiles

Katherine E. Bujold, Johans Fakhoury, Thomas G. W. Edwardson, Karina M. M. Carneiro, Joel Neves Briard, Antoine G. Godin, Lilian Amrein, Graham D. Hamblin, Lawrence C. Panasci, Paul W. Wiseman and Hanadi F. Sleiman
DOI: 10.1039/C4SC00646A

*Access is free until 02/06/2014 through a registered RSC account – click here to register

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Decoding interstellar carbon

For over 20 years the infrared spectra of many astronomical objects have been interpreted as flat two-dimensional polycyclic aromatic hydrocarbons (PAHs) that are also thought to be the source of organic matter on our own planet. More recently the detection of molecules such as fullerenes – molecules composed entirely of carbon, including the spherical C60 – has revealed a more complicated picture of carbon in space. The links between these different molecules have been rather unclear but new research from Héctor Alvaro Galué at VU University of Amsterdam, in the Netherlands, has taken a fresh approach to this long-standing puzzle.

Energetic particles in interstellar space induce strain and re-hybridisation within flat carbon structures. Background image: © NASA, ESA, M Robberto (Space Telescope Science Institute/ESA) and the Hubble Space Telescope Orion Treasury Project Team


Read the full article in Chemistry World»

Read the original journal article in Chemical Science – it’s free to download until 6th June:
Decoding the infrared signatures of pyramidal carbons in graphenic molecular nanostructures of interstellar origin
Hector Alvaro Galue  
Chem. Sci., 2014, Accepted Manuscript, DOI: 10.1039/C4SC00890A, Edge Article

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DNA cube programmed for an exclusive reveal

Scientists in Canada have made DNA cubes that are programmed to unzip and reveal molecules locked inside them in response to a carefully chosen trigger. Hanadi Sleiman and colleagues at McGill University and the Jewish General Hospital in Montreal, designed the cubes to release the drug cargo they might be carrying only in diseased cells and not normal cells.

The mRNA trigger binds tothe overhangs and opens the cube by strand displacement and strategically placed nicks on the structure


Read the full article in Chemistry World»

Read the original journal article in Chemical Science – it’s free to download until 7th May:
Sequence-responsive unzipping DNA cubes with tunable cellular uptake profiles
Katherine E. Bujold, Johans Fakhoury, Thomas G. W. Edwardson, Karina M. M. Carneiro, Joel Neves Briard, Antoine G. Godin, Lilian Amrein, Graham D. Hamblin, Lawrence C. Panasci, Paul W. Wiseman and Hanadi F. Sleiman  
Chem. Sci., 2014, Advance Article, DOI: 10.1039/C4SC00646A, Edge Article

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Hot Chemical Science articles for April

All of the articles below are free to access until 14th May

Boron–boron J coupling constants are unique probes of electronic structure: a solid-state NMR and molecular orbital study
Frédéric A. Perras and David L. Bryce  
Chem. Sci., 2014, Advance Article
DOI: 10.1039/C4SC00603H, Edge Article


Disubstituted sialic acid ligands targeting siglecs CD33 and CD22 associated with myeloid leukaemias and B cell lymphomas
Cory D. Rillahan, Matthew S. Macauley, Erik Schwartz, Yuan He, Ryan McBride, Britni M. Arlian, Janani Rangarajan, Valery V. Fokin and James C. Paulson  
Chem. Sci., 2014, Advance Article
DOI: 10.1039/C4SC00451E, Edge Article


Solvatochromic AIE luminogens as supersensitive water detectors in organic solvents and highly efficient cyanide chemosensors in water
Yuping Zhang, Dongdong Li, Yi Li and Jihong Yu  
Chem. Sci., 2014, Accepted Manuscript
DOI: 10.1039/C4SC00721B, Edge Article

 


Catalytic enantioselective synthesis of 2-aryl-chromenes
Bi-Shun Zeng, Xinyi Yu, Paul W. Siu and Karl A. Scheidt  
Chem. Sci., 2014, Advance Article
DOI: 10.1039/C4SC00423J, Edge Article

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Hot Chemical Science articles for March

All of the articles below are free to access until 13th April 

Turn-ON fluorescent affinity labeling using a small bifunctional O-nitrobenzoxadiazole unit
Takao Yamaguchi, Miwako Asanuma, Shuichi Nakanishi, Yohei Saito, Masateru Okazaki, Kosuke Dodo and Mikiko Sodeoka
Chem. Sci., 2014,5, 1021-1029
DOI: 10.1039/C3SC52704B, Edge Article  

   


DNAzyme-based 2:1 and 4:1 multiplexers and 1:2 demultiplexer
Ron Orbach, Francoise Remacle, R. D. Levine and Itamar Willner
Chem. Sci., 2014,5, 1074-1081
DOI: 10.1039/C3SC52752B, Edge Article  

 


Incorporation of electrically charged N-alkyl amino acids into ribosomally synthesized peptides via post-translational conversion
Takashi Kawakami, Toru Sasaki, Patrick C. Reid and Hiroshi Murakami
Chem. Sci., 2014,5, 887-893
DOI: 10.1039/C3SC52744A, Edge Article   

   Click here for more free hot Chemical Science articles for March

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Four steps to asthma treatment

Montelukast works by blocking the action of chemicals released by the body as part of allergic and inflammatory reactions

Scientists based in the US have devised a new way to make Montelukast, a drug used in the treatment of asthma and seasonal allergies.

Asthma is a chronic inflammatory disease of the airways which affects up to 300 million people worldwide and caused 250,000 deaths in 2011. Although there is no cure for asthma, symptoms can be managed through the use of fast-acting medication to treat acute attacks, and long-term control achieved using inhaled corticosteroids, sometimes in conjunction with a leukotriene antagonist, such as Montelukast.


Read the full article in Chemistry World»

Read the original journal article in Chemical Science – it’s free to access until 28th April:
Iron catalyzed enantioselective sulfa-Michael addition: a four-step synthesis of the anti-asthma agent Montelukast
James D. White and Subrata Shaw  
Chem. Sci., 2014, DOI: 10.1039/C4SC00051J

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Neutralising heparin without complications

The self-assembled multivalent complexes (blue) can induce blood clotting by binding to heparin (green)

Recovering from operations could become easier thanks to a self-assembling multivalent heparin binding agent being developed by scientists in the UK, Italy and Spain. 

During some surgical procedures, heparin is given to patients to prevent blood clots from forming by thinning their blood. Protamine is then given following surgery to inactivate heparin and allow healing to begin. However, this drug can have dangerous side-effects, so is often only used in small doses but this can lead to bleeding and further surgery being required. Spending time at the hospital after his husband’s lung transplant gave David Smith at the University of York personal insight into the problems of using protamine and inspired him and his team to devise an alternative. 

The Self-Assembled Multivalent complexes they have created, called SAMul in honour of Smith’s husband, Sam, are made up of molecules containing an ionic heparin binding part and a hydrophobic part. In biological media, the hydrophobic section induces the individual molecules to aggregate into micelles, with multiple heparin binding sites exposed on the micelle surface. This multivalency increases the micelles’ ability to bind heparin. Incorporating an ester linker into the molecules mean they will slowly degrade via hydrolysis if an excess is used, minimising any side effects. 


Read the full article in Chemistry World» 

Read the original journal article in Chemical Science – it’s free to download until 26th March:
Nanoscale self-assembled multivalent (SAMul) heparin binders in highly competitive, biologically relevant, aqueous media
Stephen M. Bromfield, Paola Posocco, Ching W. Chan, Marcelo Calderon, Scott E. Guimond, Jeremy E. Turnbull, Sabrina Pricl and David K. Smith  
Chem. Sci., 2014, Advance Article, DOI: 10.1039/C4SC00298A, Edge Article

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