Archive for the ‘Subject Areas’ Category

Intramolecular enolate arylation: formation of 4° amino-acid–derived hydantoins

The synthesis of quaternary amino acids is an important challenge facing researchers in bioorganic and medicinal chemistry. While there are a number of ways to transform tertiary amino acids into their quaternary counterparts, α-arylation of amino acids and their derivatives remains limited.

Now, in this HOT ChemComm article, Professor Jonathan Clayden and co-workers at the University of Manchester have revealed an elegant intramolecular arylation of tertiary amino acid derivates, which exploits the use of a urea linkage to connect the amino acid derivative—a nitrile or acid—and the aryl “electrophile”. During the course of the reaction, this N-aryl substituent migrates to the α-carbon of the amino acid moiety. This is followed by a cyclisation, leading to a heterocyclic hydantoin derivative. The reaction is mediated by strong base, and is thought to proceed via the metallated enolate.

Interestingly, the researchers found that the migration of the aryl ring was not influenced by its electronic properties, and that the transition-metal–free reaction could be applied successfully to a range of natural and unnatural tertiary amino acid substrates. If the tertiary amino acid nitrogen is protected with a PMB (p-methoxybenzyl) group, the resulting hydantoin product can subsequently be hydrolysed, affording the acyclic quaternary amino acid.

The reaction was monitored by in situ infrared spectroscopy (ReactIR) to identify the reaction intermediates and cast light on the mechanism of the arylation. Further details of the ReactIR analysis can be found in the electronic supplementary information. Ultimately, Clayden and his group hope to further develop this useful methodology to allow the enantioselective arylation of amino acids.

For more, check out this HOT ChemComm article in full:

Rachel C. Atkinson, Daniel J. Leonard, Julien Maury, Daniele Castagnolo, Nicole Volz and Jonathan Clayden
Chem. Commun., 2013, 49, 9734–9736
DOI: 10.1039/C3CC46193A

Ruth E. Gilligan is a guest web-writer for ChemComm.  She has recently completed her PhD in the group of Prof. Matthew J. Gaunt at the University of Cambridge, focusing on the development and application of C–H functionalisation methodology.

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The chemists’ enzyme

The title of this post was taken from the website of Barry Trost, one of the world’s leading scientists and author of an astonishing 924 papers. Describing his work, he states:

One major activity in designing new reactions and reagents involves the development of “chemists’ enzymes” – non-peptidic transition metal based catalysts that can perform chemo-, regio-, diastereo-, and especially enantioselective reactions.

Chemists have, for a long time, sought to reproduce the incredible feats of nature. Natural biology has evolved over many years to achieve the efficiency and reactivity that most lab-based chemists could only dream of. Nature achieves this by employing incredibly sophisticated enzymes which are, sadly, almost impossible to replicate by a synthetic chemist due to their complexity. An alternative idea is to use these enzymes as inspiration for new catalysts and try to focus on the general reasons why they work rather than trying to create direct copies.

Supramolecular catalysts for decarboxylative hydroformylation and aldehyde reduction.

Dr Bernhard Breit, Lisa Diab and Urs Gellrich at Albert-Ludwigs-Univertat in Germany have shown in a HOT ChemComm article that a highly selective catalyst can be created when combining a metal catalyst with a directing ligand to control the reaction. In this Communication, they report excellent results using  rhodium, the classic metal of choice for hydroformylation, and a functional group for recognition of the substrate. The net effect of these features combined is that the substrate is held in a specific way at the catalytic site. As a result, the reaction which follows can only occur in a specific way. This is similar to how enzymes control the chirality.

The concept behind this catalyst is one which could be applied to a great number of different reactions – no doubt we can look forward to reading about these in the near future.

Read this HOT ChemComm article today!

Tandem decarboxylative hydroformylation–hydrogenation reaction of α,β-unsaturated carboxylic acids toward aliphatic alcohols under mild conditions employing a supramolecular catalyst system
Lisa Diab, Urs Gellrich and Bernhard Breit
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC45547E, Communication

Ruaraidh McIntosh is a guest web-writer for ChemComm.  His research interests include supramolecular chemistry and catalysis.  When not working as a Research Fellow at Heriot-Watt University, Ruaraidh can usually be found in the kitchen where he has found a secondary application for his redoubtable skills in burning and profanity.

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The big bang theory (made safe) — Impact insensitive dinitromethanide salts

The improvement of high energy density materials (HEDM) is an ongoing challenge. These materials are widely used in propellants, explosives, and pyrotechnics, and researchers face the difficult task of optimising their explosive potential while ensuring their safety and ease of handling. Nitro-substituted methanide compounds are an important class of HEDM, but often suffer from thermal instability and impact sensitivity. This HOT ChemComm article addresses this challenge by highlighting the preparation and analysis of impact insensitive dinitromethanide salts.

Jean’ne Shreeve at the University of Idaho, working with Ling He at Sichuan University and co-workers at the US Naval Research Laboratory, proposed that by combining an oxygen-rich polynitromethanide anion (either a nitroform anion TNM, or a dinitromethanide anion DNM) with nitrogen-rich cations such as guanidinium, triazolium and tetrazolium anions, the resulting salt would exhibit high energetic properties as well as improved stability.

Using a range of guanidinium, triazolium and tetrazolium halides, the researchers prepared nine DNM salts and analysed their physicochemical properties. All of the salts displayed good thermal and detonation properties while being significantly less sensitive to impact than common explosives such as 2,4,6-trinitrotoluene (TNT) and cyclotrimethylenetrinitramine (RDX).

Molecular structure and Packing diagram of DNM salt 3

Guanidinium–DNM salt 3, decomposing at 187 °C, displayed the best thermal stability among all other known DNM salts. X-ray crystallography revealed that this increased stability is due to its strongly hydrogen-bonded structure. Each guanidinium cation forms six hydrogen bonds with the NO2 groups of four surrounding anions, creating a planar, layered packing structure.

Insights such as these will allow researchers to design HEDM with better thermal stability and less impact sensitivity, controlling their energetic potential yet ensuring greater safety and utility.

For more, check out the ChemComm article in full:
Impact insensitive dinitromethanide salts
Ling He, Guo-Hong Tao, Damon A. Parrish, and Jean’ne M. Shreeve
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC46518G

Ruth E. Gilligan is a guest web-writer for ChemComm.  She has recently completed her PhD in the group of Prof. Matthew J. Gaunt at the University of Cambridge, focusing on the development and application of C–H functionalisation methodology.

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Mind the gap – Enhancing intercalation of luminescent aggregates

Particular molecules, which are not luminescent in solution, can luminesce intensely upon molecular aggregation; this is known as aggregation-induced emission (AIE). AIE luminogens are used widely as efficient electroluminescent materials, sensitive chemosensors, and as bioprobes. The main cause of the AIE effect is the restriction of intramolecular rotation. Therefore it can be promoted by introducing the molecules into inorganic materials with a rigid skeleton such as α-zirconium phosphate layers.

Jihong Yu and colleagues from Jilin University in China have published a method describing the intercalation of a quaternary tetraphenylethene (TPEN) cation, an AIE chromophore, into α-zirconium phosphate. At first glance, this does not seem to be too difficult a task– after all, the TPEN has two permanent positive charges on either end suitable to interact with the negatively charged phosphate layers. But, in this case, size does matter. The chromophore is almost three times larger than the distance between phosphate layers, more than a tight fit!

Stretching the layers of α-zirconium phosphate by preintercalation of butylamine before introduction of the chromophore

To overcome this problem, Yu and colleagues carried out a preintercalation step with butylamine before performing a cation exchange step to place the TPEN chromophore within the phosphate layers. Ultimately, they stretched the layer before putting the final molecule inside, just like you would stretch a pair of shoes in an effort to make them fit before placing your sensitive feet inside.

The intercalated product was found to be highly emissive in the blue region of the electromagnetic spectrum and was readily internalized by cells. The system also showed good biocompatibility, suggesting that it would make an excellent base for fluorescent labels in future biomedical imaging applications.

To read the details, check out the HOT Chem Comm article in full:

AIE cation functionalized layered zirconium phosphate nanoplatelets: ion-exchange intercalation and cell imaging

Dongdong Li, Chuanlong Miao, Xiaodan Wang, Xianghui Yu, Jihong Yu and Ruren Xu
Chem. Commun., 2013, 49, Accepted Manuscript
DOI: 10.1039/C3CC45041D

Iain Larmour is a guest web writer for ChemComm.  He has researched a wide variety of topics during his years in the lab including nanostructured surfaces for water repellency and developing nanoparticle systems for bioanalysis by surface enhanced optical spectroscopies.  He currently works in science management with a focus on responses to climate change.  In his spare time he enjoys reading, photography and art.

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A new, functionally tolerant route to organo-aluminium reagents

Paul Knochel and colleagues at the Ludwig Maximilians University in Munich have reported a new general synthesis of aryl and heteroaryl aluminium reagents.  The route described allows a larger range of functional groups to be incorporated, compared with the more usual approach of inserting Al into aryl halide bonds directly.  The synthetic methodology uses di-isobutyl aluminium chloride and n-BuLi at -78C in an exchange reaction with a functionalised aryl or heteroaryl halide.

General scheme for preparation and derivitisation of aryl aluminium reagents

The synthesis of a group of derivatives is described, via the reaction of the aluminium reagents with a variety of electrophiles.  Typical cross coupling reactions using palladium catalysis, as well as copper-catalysed Michael additions, allylation and acylations are reported, involving a rich variety of incorporated functional groups. Importantly, further derivitisation of the organo-aluminium reagents includes no further transmetalation steps.

Of note are the reactivities of electron-rich furan and thiophene bromides functionalised with ester groups, which also could remain intact during the reaction with di-isobutylaluminium chloride and butyl-lithium at -78C, yielding the desired reagents that were further derivatised, as in other examples.

N-heterocycles such as 3-bromo-quinoline also received attention, yielding the aluminium reagent in 73% yield, and smoothly converting in a palladium catalysed cross coupling reaction with 4-iodobenzonitrile.  Full NMR data for the products of the reactions described is given in the supplementary information.

In general, this Communication describes a considerable step forward in the field of organo-aluminium reagents for organic synthesis, and no doubt will be of interest to synthetic chemists in many fields.

Read this HOT ChemComm article today!

Generation of Functionalised Aryl and Heteroaryl Aluminium Reagents by Halogen/Lithium Exchange
Thomas Klatt, Klaus Groll and Paul Knochel
Chem. Commun., 2013,49, 6953-6955
DOI: 10.1039/C3CC43356K, Communication

Kevin Murnaghan is a guest web-writer for Chemical Communications. He is currently a Research Chemist in the Adhesive Technologies Business Sector of Henkel AG & Co. KGaA, based in Düsseldorf, Germany. His research interests focus primarily on enabling chemistries and technologies for next generation adhesives and surface treatments. Any views expressed here are his personal ones and not those of Henkel AG & Co. KGaA.

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Catalysis and Sensing for our Environment (CASE) Network

The Catalysis and Sensing for our Environment (CASE) network is a group of friends keen to pool their parallel interests to develop novel molecular sensors and catalysts exploiting common underlying interests. Now key members of the CASE network (including Fossey, James, Qian, Jiang and Deng) publish two papers in the current edition of Chemical Communications that take pride of place on the front and back cover.

The front cover article (doi: 10.1039/c3cc43265c) describes catalytic de-borylation in a peroxide sensing regime (model for biological reactive oxygen species), the cover image pays homage to Joseph Priestly, who discovered oxygen in Birmingham, by including the RSC medal bearing his image as a centre piece. The back cover article (doi:10.1039/c3cc43083a) cleverly uses a molecule previously reported in nucleophilic catalysis (Chem. Commun., 2011,47, 10632) and uses it as a sensor for chiral secondary alcohols.

The metallocene containing sensor exists as two diastereoisomers and a surprising finding of this dual catalyst/sensor approach is that the non-catalytically active diastereoisomer is an equally efficient sensor as the catalytically active diastereoisomer. The research described in these papers derives from the close knit CASE collaboration and so the authors have used visual keys linking the front and back cover images, just as the research teams are linked via the CASE Network.

CASE network’s, free to attend, symposia have been held at the University of Bath (UK, 2008), ECUST (China, 2009), the University of Birmingham (UK, 2011), SIOC (Shanghai, 2012), University of Texas at Austin (USA, 2013) and future meetings are planned for Xiamen and Dublin. The CASE symposia have proven to be hot beds for collaborative discussion with numerous papers and successful funding applications resulting from the interactions initiated through the networking opportunities provided by these meetings. The authors gratefully acknowledge the support offered by RSC Journals who have actively supported these meetings, thus fostering the research presented in these two papers.

These two papers embody the ethos and importance of the CASE concept, since they include international collaboration and ideas that are underpinned by the complimentary combination catalysis and sensing.

Both these papers are Open Access and can be read and downloaded for free – find out more about the Royal Society of Chemistry’s Open Access policy:

Front Cover:

“Integrated” and “insulated” boronate-based fluorescent probes for the detection of hydrogen peroxide
Xiaolong Sun, Su-Ying Xu, Stephen E. Flower, John S. Fossey, Xuhong Qian and Tony D. James*
Chem. Commun., 2013, DOI: 10.1039/C3CC43265C

Back Cover:
Colorimetric enantioselective recognition of chiral secondary alcohols via hydrogen bonding to a chiral metallocene containing chemosensor
Su-Ying Xu, Bin Hu, Stephen E. Flower, Yun-Bao Jiang, John S. Fossey, Wei-Ping Deng and Tony D. James*
Chem. Commun., 2013, DOI: 10.1039/C3CC43083A

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Mechanochemistry: ChemComm web theme and Faraday Discussion 170 abstracts deadline 12 August

ChemComm Mechanochemistry web collection

We are delighted to present our ChemComm web themed issue on Mechanochemistry: fundamentals and applications in synthesis, guest edited by Stuart James (Queen’s University Belfast, UK) and Tomislav Friščić (McGill University, Canada).  Check out this special online collection now!

C3CC90136J

Faraday Discussion 170 on Mechanochemistry– deadline for oral abstracts 12 August 2013

We also invite you to submit your oral abstract for Faraday Discussion 170– Mechanochemistry: From Functional Solids to Single Molecules by Monday, 12 August 2013.  Stuart and Tomislav co-chair the FD170 Scientific Committee; they are joined by Jon Steed, James Mack, Elena Boldyreva and Carsten Bolm.

FD170banner

Submit your abstract now and register to secure your place at this exciting event!

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Azobenzene switching controls movement of oleate assemblies

The study of controlled motion on the molecular scale is leading to the development of materials in which molecular motions can be used to control a macroscopic effect.  In particular, the isomerisation of azobenzene from the stable trans- form to the cis- isomer on irradiation with UV light has been widely used in supramolecular and soft matter chemistry as a simple, controllable molecular switch for this purpose.

In this HOT ChemComm article, scientists from Hokkaido and Kanagawa universities in Japan have investigated the macroscopic motion of some simple oleate assemblies containing azobenzene derivatives.

Simple oleates form a range of supramolecular assemblies under certain pH conditions.  The authors found that mixtures of simple oleates with their new azobenzene containing analogues could also form these assemblies, and investigated the effect of irradiating the structures with UV light.  They found that vesicles containing azobenzene derivatives could be seen to reversibly expand and contract on irradiation.  Additionally, helical multilayer assemblies containing azobenzene derivatives could be forced to reversibly straighten and re-coil using UV light (shown below).

azobenzen oleatesazobenzene helices

This Communication describes an intriguing demonstration that designing controllable, switchable molecular components can create highly organised macroscopic motions, and is a great step towards functional supramolecular machinery.

Read this HOT ChemComm article today:

Macroscopic motion of supramolecular assemblies actuated by photoisomerization of azobenzene derivatives
Yoshiyuki Kageyama,  Naruho Tanigake,  Yuta Kurokome,  Sachiko Iwaki, Sadamu Takeda,  Kentaro Suzukib  and Tadashi Sugawara
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC43488E

Cally Haynes is a guest web-writer for ChemComm.  She is currently a post doctoral researcher at the University of Southampton, and her research interests include the supramolecular chemistry of anions.  When not in the laboratory, she enjoys travelling and watching football.

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Synthesis of non-toxic HSP90 inhibitors via Suzuki–Miyaura reaction

HSP90 (Heat Shock Protein 90) is a chaperone protein which is involved in the disease pathways of many cancers, and such neurodegenerative illnesses as Alzheimer’s and Parkinson’s disease.  The inhibition of HSP90 has gained a great deal of attention since its discovery, and offers the potential to treat many serious illnesses.  Much interest has focused on geldanamycin—a benzoquinone ansamycin which is highly effective in the inhibition of HSP90.  Unfortunately, geldanamycin suffers from high liver toxicity in addition to poor stability and solubility which greatly limits its therapeutic utility.

Christopher Moody at the University of Nottingham has devoted much research toward the targeting and inhibition of HSP90.  His group recently discovered that the 19-position plays a key role in geldanamycin’s toxicity, and that substitution at that position can render the compound non-toxic, through the suppression of conjugate addition reactions which are thought to be responsible for its hepatotoxicity.

While Moody previously utilized the Stille reaction for substitution at this position, the transformation was limited in cases, not scalable, and its industrial application was hampered by undesirable, toxic reagents and waste products.  In this Communication, Moody and Kitson overcome these problems by employing the Suzuki–Miyaura reaction to install functionality at the 19-position.  Using a modification of the Suzuki–Miyaura reaction previously described by Eli Lilly researchers, Moody was able to obtain functionalised geldanamycins in yields which compare well with or exceed those obtained by the Stille protocol.

Beginning with readily accessible 19-iodogeldanamycin (1), the cross-coupling reaction allows a range of substituents to be installed easily, using an array of widely available boronic acids and esters. Aryl-, vinyl- and allyl-groups could be installed with excellent yields, while the use of alkyl boronic acids and esters afforded moderate results. The electronic supplementary information contains full details of the reaction optimisation.

This method allows non-toxic 19-substituted-geldanamycins to be prepared efficiently and without the disadvantages associated with the previous Stille route.  Not only will this benefit the synthesis of geldanamycins within the pharmaceutical industry, but it should also encourage further clinical research of these important compounds.

For more, check out the ChemComm article in full:

An improved route to 19-substituted geldanamycins as novel Hsp90 inhibitors – potential therapeutics in cancer and neurodegeneration
Russell R. A. Kitson and Christopher J. Moody
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC43457E

Ruth E. Gilligan is a guest web-writer for ChemComm.  She has recently completed her PhD in the group of Prof. Matthew J. Gaunt at the University of Cambridge, focusing on the development and application of C–H functionalisation methodology.

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A cloak of many carbons

Catalysts can be exceedingly useful in the real world, from treating our car’s exhaust fumes to creating fertilisers.  There are many ways to make catalysts and even multiple ways to make the same catalyst.  The path that you choose to a catalyst can have a significant impact on the quality of the end product.

Eloy del Rio and team from the Structure and Chemistry of Nanomaterials group at the University of Cadiz in Spain have investigated ceria-based oxide-supported gold catalysts for carbon monoxide oxidation.  The routine for depositing the metal phase onto the oxide support and the subsequent catalyst activation step can ultimately affect the activity of the catalyst.  Catalysts prepared by deposition-precipitation with urea followed by activation under oxidising conditions result in significantly more activity than those prepared under reducing conditions.

Variation in catalyst activity under oxidising and reducing activation protocols.

This had previously been observed by others, but the reason for the difference was never discussed.  The authors set out to find out why the activity differed.  They used a suite of nano-analytical and nano-structural techniques to probe the catalysts, finding that the catalyst prepared under reducing conditions had a coat of amorphous carbon which severely hampered the catalyst activity.  This could be removed by a re-oxidation treatment that burnt away the carbon layer and produced an active catalyst similar to the one produced under oxidising conditions.

The precipitating agent used in the synthesis can also influence the resulting activities of catalysts prepared via the deposition-precipitation method.  No difference between oxidising and reducing activations is observed when sodium carbonate is used in place of urea.

To read the details, check out the ChemComm article in full:

Dramatic effect of redox pre-treatments on the CO oxidation activity of Au/Ce0.50Tb0.12Zr0.38O2-x catalysts prepared by deposition-precipitation with urea: a nano-analytical and nano-structural study
E. del Rio, M. López-Haro, J.M. Cies, J.J. Delgado, J.J. Calvino, S. Trasobares, G. Blanco, M.A. Cauqui and S. Bernal
Chem. Commun., 2013, 49, Accepted Manuscript
DOI: 10.1039/C3CC42051e

Iain Larmour is a guest web writer for ChemComm.  He has researched a wide variety of topics during his years in the lab including nanostructured surfaces for water repellency and developing nanoparticle systems for bioanalysis by surface enhanced optical spectroscopies.  He currently works in science management with a focus on responses to climate change.  In his spare time he enjoys reading, photography and art.

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