For catalysis, do you need one gold or two?

Doesn’t everyone love gold? Not only is it shiny and pretty in macroscopic form, but it’s one of the best-behaved nanoscale systems and the focus of extensive catalysis study. While much is known about the mechanisms of many gold-catalyzed reactions, a question of whether a number of organogold complexes are actual intermediates or off-cycle sinks remains. Catalysis of the nucleophilic addition of water to alkynes via gold complexes is a reaction with multiple hypothesized active intermediates and reaction pathways. Initially thought to occur via monoaurated species, subsequent work proposed activation by multiple gold catalysts. The problem, as seen in figure 1, is that the two pathways are connected and the presence of any specific intermediates can’t rule either pathway out.

Figure 1. Reaction scheme with potential intermediates for nucleophile addition to an alkyne via a gold-catalyzed pathway.

To solve this problem, researchers in the Czech Republic and the Netherlands developed a method to probe solution-phase intermediates with electrospray ionization mass spectrometry (ESI-MS) called Delayed Reactant Labeling. To do this, one of the reactants must be a mixture of isotopically labeled and unlabeled molecules, added separately with a time delay. This helps eliminate ionization artifacts and moves the reaction away from steady state conditions to allow for kinetic modeling. Using this technique, combined with other more standard characterization methods like NMR and infrared (IR) spectroscopy, the researchers studied gold-catalyzed water addition to alkynes. The catalyst is known to form digold hydroxides in the presence of water, which lends credence to the idea that a digold species is involved in the catalysis. Based on kinetic restrictions, they studied the addition of water to 1-phenylpropyne, which produces a mixture of regioisomers of intermediates that was a bit challenging to deconvolute. The initial ESI-MS spectra show the presence of both mono- and diaurated species and the different fragments were isolated, analyzed by IR photodissociation, and the spectra compared to theoretical models to corroborate their identity.

These results set the stage for the Delayed Reactant Labeling studies using deuterated 1-phenylpropyne. After the reaction reached equilibrium, in this case about 40 minutes, the labeled reactant was added to then allow for kinetic fitting of the intermediates. They determined that under standard conditions the monoaurated species has a half life of approximately 9 minutes and the diaurated species has a half life of 7 minutes. These decay constants could be altered by adding organic acids to degrade the complexes faster, while attempts to trap the species as salts were unsuccessful. Upon reaction with D2O a kinetic isotope effect doubling the lifetimes was observed and suggests that the mechanism is likely the same for all intermediates and that it involves a hydrogen/proton transfer. The two types of species also have slightly different rates of formation, with the diaurated species likely having a higher turn-over frequency. However, there isn’t a dramatic difference between the kinetics of these two types of intermediates.

Figure 2. Example of a) spectra obtained from the delayed reactant labeling method and b) fits of peak intensities over time used to extract kinetic information.

In order to determine which of the intermediates is catalytically relevant, the researchers changed the substrate to 3-hexyne. The symmetric alkyne has no regioisomeric intermediates to convolute the data, but the reaction kinetics are much faster and therefore not suited to the prior mechanistic studies. By adding an excess of acid, the rate determining step was moved from protodeauration.  Under these conditions, the rate has a linear dependence on the gold complex and likely proceeds primarily via monoaurated intermediates. This approach combining multiple analytical techniques elucidated the role of various gold-containing intermediates and demonstrated the utility of ESI-MS as a tool for determining reaction kinetics.

To find out more, please read:

Monoaurated vs. diaurated intermediates: causality or independence?

Mariarosa Anania, Lucie Jašková, Jan Zelenka, Elena Shcherbachenko, Juraj Jašk and Jana Roithová

Chem. Sci., 2020, Advance Article

About the blogger:

Beth Mundy is a PhD candidate in chemistry in the Cossairt lab at the University of Washington in Seattle, Washington. Her research focuses on developing new and better ways to synthesize nanomaterials for energy applications. She is often spotted knitting in seminars or with her nose in a good book. You can find her on Twitter at @BethMundySci.

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Congratulations to the Poster Prize winners at IPEROP!

Congratulations to all three Royal Society of Chemistry Poster Presentation Prize winners at this year’s Perovskite, Organic Photovoltaics and Optoelectronics conference, IPEROP, in Tsukuba, Japan 20 – 22 January!

Chemical Science Executive Editor May Copsey attended and presented the awards to the three winners.

 

Koichiro Kamimori Simone Mastroianni Ryota Jono

 

 

Chemical Science, Royal Society of Chemistry

Submit to Chemical Science today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

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Biophotoelectrochemical Systems: Solar Energy Conversion and Fundamental Investigations, 22 – 24 April, Cambridge

Biophotoelectrochemical Workshop 2020

We are pleased to be sponsoring the upcoming Biophotoelectrochemical Systems: Solar Energy Conversion and Fundamental Investigations workshop which will be held at the School of Divinity, St John’s College, Cambridge on 22 – 24th April.

This workshop will cover a range of topics, including:

  • Latest developments in protein-film and biofilm photoelectrochemistry, semi-artificial photosynthesis, biophotovoltaics, biological production of solar fuels and chemicals
  • New materials and characterisation tools for the above areas
  • Insights into degradation pathways (photodegradation, reaction with reactive oxygen species, mediator toxicity…) and strategies to enhance stability
  • Short-circuiting pathways at the bio-material interface (charge carrer recombination, redox cycling, non-natural electron transfer pathways…)
  • Engineering challenges – using protein-film and biofilm electrodes for practical applications (electron transfer bottlenecks, the voltage/recombination dilemma, bioengineering challenges…)

 

Registration is now open

 

You can find out more information, including a full list of confirmed speakers, over on the website.

 

Chemical Science, Royal Society of Chemistry

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The Miller Symposium, 5-6 March, UC Davis

The Miller symposium is an annual event dedicated to Professor R. Bryan Miller and his contributions and achievements in research, teaching, and the chemical community. This symposium honours his legacy by celebrating the advancements in chemistry and chemical biology that have led transformative technologies in pharmaceutical and biotechnology industries.

 

Chemical Science is pleased to be sponsoring along with Organic & Biomolecular Chemistry.

 

To register for the symposia, click here

To learn more about the work of R. Bryan Miller and previous symposia, click here.

 

R. Bryan Miller Symposium

 

 

Chemical Science, Royal Society of Chemistry

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14th Annual International Electromaterials Science Symposium, Australian National University, Canberra 5 – 7 February 2020

14th Annual International Electromaterials Science Symposium

 

Hosted by the ARC Centre of Excellence for Electromaterials Science (ACES), the 14th Annual International Electromaterials Science Symposium will be held at the Australian National University in Canberra 5 – 7 February. Chemical Science is pleased to be sponsoring the symposium along with Journal of Materials Chemistry C and Materials Horizons.

 

The symposium will provide a multidisciplinary forum, with participants from across eight Australian collaborating institutions, as well as international partners from around the world. Topics will cover both the fundamental and applied aspects of electromaterials, new devices, and across broad areas of research in Health, Energy, and Ethics. It provides a platform for leading international scientists and engineers to communicate their work to the next generation of researchers, and inspire us to continue to make the scientific and technological breakthroughs that are necessary to continue our transition towards a cleaner, healthier and more socially conscious society.

 

You can find out more over on the website

 

~

Chemical Science, Royal Society of Chemistry

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HOT articles: December

We are pleased to share a selection of our referee-recommended HOT articles for December. We hope you enjoy reading these articles and congratulations to all the authors whose articles are featured! As always, Chemical Science is free to read & download. You can find our full 2019 HOT article collection here.

 

Interplay between intrinsically disordered proteins inside membraneless protein liquid droplets
Yongsang Jo and Yongwon Jung
Chem. Sci., 2020, Advance Article
DOI: 10.1039/C9SC03191J

https://doi.org/10.1039/C9SC03191J

 

 

 

 

 

 

 

 

Single-molecule nanopore sensing of actin dynamics and drug binding
Xiaoyi Wang, Mark D. Wilkinson, Xiaoyan Lin, Ren Ren, Keith R. Willison, Aleksandar P. Ivanov, Jake Baum and Joshua B. Edel
Chem. Sci., 2020, Advance Article
DOI: 10.1039/C9SC05710B

10.1039/C9SC05710B

 

 

 

 

 

 

 

Uncommon structural and bonding properties in Ag16B4O10
Anton Kovalevskiy, Congling Yin, Jürgen Nuss, Ulrich Wedig and Martin Jansen
Chem. Sci., 2020, Advance Article
DOI: 10.1039/C9SC05185F
10.1039/C9SC05185F

 

 

 

 

 

 

 

 

 

 

Rational synthesis of interpenetrated 3D covalent organic frameworks for asymmetric photocatalysis
Xing Kang, Xiaowei Wu, Xing Han, Chen Yuan, Yan Liu and Yong Cui
Chem. Sci., 2020, Advance Article
DOI: 10.1039/C9SC04882K

10.1039/C9SC04882K
 

 

 

 

 

 

 

 

 

Serine is the molecular source of the NH(CH2)2 bridgehead moiety of the in vitro assembled [FeFe] hydrogenase H-cluster
Guodong Rao, Lizhi Tao and R. David Britt
Chem. Sci., 2020, Advance Article
DOI: 10.1039/C9SC05900H

10.1039/C9SC05900H
 

 

 

 

 

 

 

 

Chemical Science, Royal Society of Chemistry

Submit to Chemical Science today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

Keep up to date with our latest articles, reviews, collections & more by following us on Twitter. You can also keep informed by signing up to our E-Alerts.

 

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Welcome to our new Associate Editor: Lin Chen

We would like to wish a very warm welcome to our new Chemical Science Associate Editor Professor Lin Chen!

 

Lin Chen, Chemical Science, Royal Society of Chemistry

Lin X. Chen is a Professor of Chemistry in Northwestern University and a Senior Chemist in Argonne National Laboratory. She received her Ph.D. from the University of Chicago. After her postdoctoral research at UC Berkeley, she joined Argonne as a staff scientist. In 2007, she joined Northwestern University where her research are focused on fundamental light-matter interactions of different solar energy conversion platforms, including excited state molecular structural dynamics in photocatalytic processes and photovoltaic materials; understanding roles of ultrafast and coherent electronic and atomic motions in in photochemical reactions, and functional structural dynamics of biomacromolecules on multiple spatial and temporal scales. Her main tools for research are ultrafast laser and X-ray spectroscopy/scattering and other property/structural methods in collaborations with theorists and chemists making molecules and materials.

She was awarded one of the highly cited scientists in 2019 by the Web of Science, with >230 publications, and >200 invited lectures. She has been members of the Research Council for the Chemical, Biological and Geological Sciences Division, Basic Energy Science, US Department of Energy, the Advisory Editorial Board of Journal of Physical Chemistry and Chemical Physics Letters, Senior Editor of ACS Energy Letters, and the International Science Advisory Committee for π-Functional Materials. She is an AAAS Fellow and has won distinguished performance award at Argonne. Her group website is at http://chemgroups.northwestern.edu/chen_group/.

 

Browse a selection of Lin’s latest work published by the Royal Society of Chemistry:

X-ray snapshots reveal conformational influence on active site ligation during metalloprotein folding
Darren J. Hsu, Denis Leshchev, Dolev Rimmerman, Jiyun Hong, Matthew S. Kelley, Irina Kosheleva, Xiaoyi Zhang and Lin X. Chen
Chem. Sci., 2019, 10, 9788-9800
DOI: 10.1039/C9SC02630D, Edge Article

Controlled growth of imine-linked two-dimensional covalent organic framework nanoparticles
Rebecca L. Li, Nathan C. Flanders, Austin M. Evans, Woojung Ji, Ioannina Castano, Lin X. Chen, Nathan C. Gianneschi and William R. Dichtel
Chem. Sci., 2019, 10, 3796-3801
DOI: 10.1039/C9SC00289H, Edge Article

Effects of 1,8-diiodooctane on domain nanostructure and charge separation dynamics in PC71BM-based bulk heterojunction solar cells
Sylvia J. Lou, Nanjia Zhou, Xugang Guo, Robert P. H. Chang, Tobin J. Marks and Lin X. Chen
J. Mater. Chem. A, 2018, 6, 23805-23818
DOI: 10.1039/C8TA06865H, Paper

Insulin hexamer dissociation dynamics revealed by photoinduced T-jumps and time-resolved X-ray solution scattering
Dolev Rimmerman, Denis Leshchev, Darren J. Hsu, Jiyun Hong, Baxter Abraham, Irina Kosheleva, Robert Henning and Lin X. Chen
Photochem. Photobiol. Sci., 2018, 17, 874-882
DOI: 10.1039/C8PP00034D, Communication

 

Chemical Science, Royal Society of Chemistry

Submit to Chemical Science today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

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How Does Nano-Confinement Boost Oxygen-Reduction Electrocatalytic Activity?

Why do biological enzymes exhibit superior catalytic activity? Well, this is mainly because they can firmly anchor reactants into catalytically active pockets using their three-dimensional structures. Inspired by this nano-confinement effect, scientists have developed “nanozymes,” a family of artificial enzymes.

A group of scientists from the University of New South Wales (Australia), University of Utah (USA), and Ruhr-Universität Bochum (Germany) investigated the interplay between the degree of nano-confinement and oxygen reduction reaction (ORR) activity. They discovered that ORR activity only scaled proportionally to the degree of confinement at low overpotentials (ORR theoretical potential: 1.23 V vs. RHE). The results have been published in Chemical Science (doi: 10.1039/C9SC05611D).

Synthesized by etching Ni from Pt-Ni alloy nanoparticles, metallic Pt nanoparticles possessing channels of different opening sizes served as the nanozymes with different confinement degrees. When the Ni content increased, the channel of the etched nanoparticles widened. Specifically, Pt nanozymes prepared from Pt-Ni nanoparticles with Pt/Ni = 1/1.5 (NZsmall) contained 69% channel openings smaller than 2 nm (Fig. 1a); Whereas those from the precursors with Pt/Ni = 1/2.5 (NZmedium) and 1/3 (NZlarge) had 52% (Fig. 1b) and 34% (Fig. 1c) <2-nm-wide channels, respectively. Therefore, the nano-confinement degrees of the three nanozymes followed the sequence of NZsmall>NZmedium>NZlarge.

Figure 1. High-resolution transmission electron microscopy images (left) and channel diameter distribution profiles (right) of (a) NZsmall, (b) NZmedium, and (c) NZlarge.

The ORR activity of the three nanozymes strongly depended on the magnitude of the overpotential. With the outer surfaces passivated by surfactants, the ORR activities of the nanozymes were only associated with O2 reduction within their channels. At low overpotentials (Fig. 2, inset), NZsmall had the highest ORR activity among all the catalysts evaluated by the authors, as indicated by its lowest kinetic current. At high overpotentials or low applied biases; however, the ORR activity of NZmedium and NZlarge rapidly increased (Fig. 2). NZmedium and NZlarge became more active than NZsmall at potentials lower than 0.82 V (vs. RHE) and 0.80 V (vs. RHE), respectively.

Figure 2. The potential (E)-dependence of kinetic current density (jk). Inset: low-overpotential (high potentials) region. Legends: solid black – NZsmall; solid blue – NZmedium; solid red – NZlarge; open black – mesoporous Pt nanoparticles without nano-channels. The consistently small absolute jk of the mesoporous nanoparticles reflected its relatively low ORR activity.

The finite element simulation revealed the underlying mechanism of the experimental results. At low overpotentials, the ORR activity was governed by the kinetics of O2-reduction. Due to high charge density, the local proton concentration inside the channels of NZsmall was the highest, leading to the fastest reaction and the highest ORR activity. At high overpotentials, the ORR activity became mass-transport limited. Nanozymes with wide channel openings, that is, NZmedium and NZlarge, allowed a large amount of O2 to diffuse into the channels, which enhanced O2 supply and augmented ORR activity.

This work unveiled the potential-dependence of the ORR catalytic activities of porous Pt nanoparticles under different degrees of nano-confinement. This insight could rationalize and further enable the design of nanozymes with tailorable ORR activities.

 

To find out more, please read:

The Importance of Nanoscale Confinement to Electrocatalytic Performance

Johanna Wordsworth, Tania M. Benedetti, Ali Alinezhad, Richard D. Tilley, Martin A. Edwards, Wolfgang Schuhmann, and J. Justin Gooding

Chem. Sci., 2019, DOI: 10.1039/C9SC05611D

 

Tianyu Liu acknowledges Zac Croft at Virginia Tech, U.S., for his careful proofreading of this post.

 

About the blogger:

Tianyu Liu obtained his Ph.D. (2017) in Chemistry from the University of California, Santa Cruz, in the United States. He is passionate about the communication of scientific endeavors to both the general public and other scientists with diverse research expertise to introduce cutting-edge research to broad audiences. He is a blog writer for Chem. Comm. and Chem. Sci. More information about him can be found at http://liutianyuresearch.weebly.com/.

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Looking Inside Nanocomposites with Tomography

As a nanocrystal chemist, it pains me to say that sometimes nanoparticles aren’t enough. One strategy for engineering materials with complex functionalities is to embed nanoparticles into a larger host matrix structure. This has been widely studied for polymer-nanoparticle assemblies, but challenges abound for inorganic host matrices. Difficulties stem from problems controlling the microstructure of the host, as nanoparticles tend to accumulate at the borders of individual crystals in polycrystalline materials. Even when higher quality inorganic materials are made in the presence of nanocrystals loadings are below 1 wt%. A possible route to address these issues is by combining inorganic matrices with polymer-functionalized nanoparticles. The polymers can also form into vesicle structures that contain the nanoparticles which are larger and more compatible with characterization techniques.

One of those techniques is cryo-ptychographic X-ray computed tomography (cryo-PXCT), a fascinating and literally cool characterization method to image the internal structure of crystals. This is a variation on imaging techniques used heavily in medicine archeology to non-destructively visualize the interior of humans or artifacts. Cryo-PXCT cools the sample to -180 oC and has spatial resolution on the order of 50-70 nm. The researchers synthesized polymer vesicles and worms of approximately 232 nm in diameter and over 1 micron in length, respectively. The nanocomposites were made via an ammonia diffusion method with a solution of calcium chloride containing the polymer nano-structure exposed to gaseous ammonia and carbon dioxide to form CaCO3 crystals with nano-structure occlusions. The morphology of the nanocomposite crystal altered based on the type of occlusion – the vesicle/calcite combination retained a traditional calcite rhombohedral structure, while the worm/calcite composite crystals featured several rounded sides, an elongated shape, and only three flat faces. These composites possessed 15 – 25 wt% occlusions, significantly higher than prior work with pure nanoparticle incorporation.

Figure 1. SEM images of vessicle/calcite (left) and worm/calcite (right) nanocomposite single crystals.

Once prepared, the researchers examined the crystals by cryo-PXCT to determine the locations of the occlusions within the composites. In the vesicle/calcite composite the vesicles are non-uniformly distributed, with several layers of vesicle density, starting with a vesicle poor core, followed by a vesicle rich region, surrounded by another vesicle poor layer, with a slight vesicle enrichment near the surface. On average the vesicles are 300 nm apart and they maintain their shape, with the larger vesicles preferentially occluding in regions of higher occlusion densities.

Figure 2. Rendering of slice through the vesicle/calcite nanocomposite colored to show both components.

The worm/calcite composite crystals show a very different distribution of occlusions, with an hourglass of low density in the center of the crystal, surrounded by a worm rich zone, and an exterior worm poor layer. These zoning effects are likely determined by the interactions between the polymers and the growing crystal surfaces or the calcium cations in the solution. Cryo-PXCT offers a fascinating way to probe the internal structure of novel multicomponent crystals in three dimensions with nanoscale resolution, providing valuable information to eventually help determine structure-function relationships.

Figure 3. Tomographs of worm/calcite nanocomposites showing the localization of worms in an hourglass shape in the center of the crystal.

To find out more, please read:

Ptychographic X-ray tomography reveals additive zoning in nanocomposite single crystals

Johannes Ihli, Mark A. Levenstein, Yi-Yeoun Kim, Klaus Wakonig, Yin Ning, Aikaterini Tatani, Alexander N. Kulak, David C. Green, Mirko Holler, Steven P. Armes and Fiona C. Meldrum

Chem. Sci., 2020, 11, 355-363.

About the blogger:

Beth Mundy is a PhD candidate in chemistry in the Cossairt lab at the University of Washington in Seattle, Washington. Her research focuses on developing new and better ways to synthesize nanomaterials for energy applications. She is often spotted knitting in seminars or with her nose in a good book. You can find her on Twitter at @BethMundySci.

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The 18th Meeting of the French-American Chemical Society (FACS XVIII), Charleston, June 2020

FACSXVIII

 

Chemical Science is pleased to be sponsoring The 18th Meeting of theFrench-American Chemical Society (FACS XVIII) in Charleston, South Carolina, 07-11 June 2020 along with Organic and Biomolecular Chemistry and ChemSocRev.

It will be held in The Emmeline hotel in the historic district of Charleston and early reigstration is now open!

 

Find out more

 

Chemical Science, Royal Society of Chemistry

Submit to Chemical Science today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

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