Archive for July, 2020

Biradical bismuth makes its debut

Low-valent compounds are attractive in chemical synthesis and catalysis due to their highly reactive nature. Carbenes are the archetypal example, where the carbon atom is divalent with two valence electrons, but group 15 analogues have also gained recent interest as reactive intermediates in fundamental transformations. These low-valent compounds (E-R), where the group 15 atom (E) has an oxidation state of +1 and is bound to just one additional atom, are extremely reactive and therefore challenging to isolate. The lighter congeners of nitrogen and phosphorus (as nitrenes, N-R, and phosphinidenes, P-R) have been isolated, but the heavier homologues are much more difficult to access and tend to undergo degradation. Stabilisation through adduct formation with Lewis bases had previously allowed for the formation of the heaviest group 15 bismuth homologue, and these stabilised bismuthinidenes showed potential in electrocatalytic and photophysical applications. Researchers in Germany and Switzerland have now reported for the first time the generation of a free and non-stabilised organometallic bismuthinidene compound, methylbismuth (BiMe), in the gas phase (Figure 1).

Low valent group 15 structures

Figure 1: Structures and examples of low-valent group 15 compounds, with their electronic ground state configuration

The researchers targeted the non-stabilised organometallic bismuthinidene using a top-down approach, by breaking the Bi-C bonds of the higher valent and well-defined BiMe3 precursor (Scheme 1). They achieved this by pyrolysis of BiMe3, with subsequent analysis by photoelectron-photoion coincidence spectroscopy (PEPICO), that allows the recording of photoionisation mass spectra to detect ions produced by the pyrolysis. As shown by the photoionisation mass spectra in Figure 2, pyrolysis resulted in methyl loss through Bi-C homolytic cleavage, with higher pyrolysis power (bottom trace) showing full conversion of BiMe3 with by of m/z = 254. Stepwise methyl loss down to atomic bismuth was observed with m/z = 209 for Bi+, but notably BiMe+ was observed at m/z = 224, indicating bismuthinidene formation.

BiMe generation

Scheme 1: Stepwise methyl abstraction from BiMe3 to generate bismuthinidene BiMe in the  gas phase by flash pyrolysis

Photoionisation mass spectra for BiMe

Figure 2: Photoionisation mass spectra showing methyl loss in the conversion of BiMe3 to BiMe by pyrolysis. Top trace = without pyrolysis, middle trace = low pyrolysis power, bottom trace = high pyrolysis power

The researchers further probed the electronic nature of the generated bismuthinidene by additional photoelectron spectroscopy and simulations. An ionisation energy of 7.88 eV was determined, and indicated the triplet (biradical) ground state (structure 3 in Scheme 1) as the lowest energy structure. This contrasts to the lighter N and P congeners, where the methylene species are the most energetically favoured (like 5 in Scheme 1). The researchers also conducted experiments to investigate the stepwise methyl abstraction via BiMe2, determining a bond dissociation energy of 210 kJ mol-1 for the first Bi-C homolytic cleavage and demonstrating that this methyl abstraction could also be achieved under moderate reaction conditions. Overall, this report indicates that non-stabilised bismuthinidenes can be generated, with the potential for future exploitation as reactive intermediates in synthetic chemistry.

 

To find out more, please read:

Methylbismuth: an organometallic bismuthinidene biradical

Deb Pratim Mukhopadhyay, Domenik Schleier, Sara Wirsing, Jacqueline Ramler, Dustin Kaiser, Engelbert Reusch, Patrick Hemberger, Tobias Preitschopf, Ivo Krummenacher, Bernd Engels,* Ingo Fischer* and Crispin Lichtenberg*

Chem. Sci., 2020, Advance Article

 

About the blogger:

Dr. Samantha Apps is a Postdoctoral Research Associate in the Lu Lab at the University of Minnesota, USA, and obtained her PhD in 2019 from Imperial College London, UK. She has spent the last few years, both in her PhD and postdoc, researching synthetic nitrogen fixation and transition metal complexes that can activate and functionalise dinitrogen. Outside of the lab, you’ll likely find her baking at home, where her years of synthetic lab training has sparked a passion in kitchen chemistry too.

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Self-adjusting MOFs

Recent decades have established that metal-organic frameworks (MOFs) are a pretty cool class of materials, with potential applications across a range of fields. In particular, their high porosities make them extremely attractive for storing a variety of gases, including possible fuels like methane and hydrogen. Two primary strategies have emerged to store H2 and CH4 in MOFs – synthesizing materials with unsaturated metals that can strongly bind to the target and synthesizing materials with small pores where multiple weak interactions combine to produce strong binding. Of course, these MOFs are designed with a single specific target in mind, making them synthetically complex and useful for storing only one type of molecule. Ideally, new MOFs with relatively straightforward syntheses that can bind multiple targets could be developed.

Figure 1. (a) Single crystal X-ray diffraction structure of 1–H2O. (b,c) View of the pores of 1–H2O showing binding pocket.

Scientists in the United States took a hybrid approach, creating MOFs with small, but flexible binding pockets. While the concept feels relatively straightforward and intuitive, it’s of course more complicated in practice. The MOF needs to hit a Goldilocks zone in terms of flexibility, where only a small number of select targets will bind rather than a wide range of gases. The researchers accomplished this by using an actinide (depleted uranium) as the metal nodes for their MOF as its tendency to adopt high coordination numbers should result in smaller pockets and limit possible rearrangements of the flexible linker. Also, the descriptor “as it is only mildly radioactive” is something I hadn’t read about a material before and rather caught my attention. The crystalline material, referred to as 1-H2O (Figure 1), was straightforwardly synthesized in an autoclave and isolated in relatively high yields. It features pores with two pockets that are capped by the bowl-shaped linkers. As synthesized, the pockets are occupied by water molecules that can be removed by heating the MOF under a dynamic vacuum.

Figure 2. (a) Neutron powder diffraction structure of D2 adsorbed at site I in 1–D2. (b) Neutron powder diffraction structure of CD4 adsorbed at site I in 1–CD4. (c) Powder X-ray diffraction structure of DMF adsorbed inside the pore of U(bdc)2.

The MOF maintains its structural integrity after water removal, actually expanding slightly. This indicates that the MOF will contract upon binding, locking the target into place in the pocket. The researchers found that the MOF rapidly uptakes both H2 and CH4 at low temperatures, but the precise nature of the binding pocket adjustments can’t be determined by gas adsorption studies. To probe the structural details, the researchers turned to neutron powder diffraction to probe the binding of deuterated molecules to the MOF (Figure 2). The obtained structures show clear, cooperative effects that cause the adjustments to the binding pocket. The multiple different interactions allow the flexible structure to fit the two different adsorbates of interest, binding them both strongly. This work demonstrates the utility and versatility of flexible MOFs for adsorbing different gases with design principles that should be transferrable to non-radioactive materials.

To find out more, please read:

Self-adjusting binding pockets enhance H2 and CH4 adsorption in a uranium-based metal–organic framework

Dominik P. Halter, Ryan A. Klein, Michael A. Boreen, Benjamin A. Trump, Craig M. Brown and Jeffrey R. Long

Chem. Sci., 2020, Advance Article

About the blogger:

Dr. Beth Mundy is a recent PhD in chemistry from the Cossairt lab at the University of Washington in Seattle, Washington. Her research focused on developing new and better ways to synthesize nanomaterials for energy applications. She is often spotted knitting in seminars or with her nose in a good book. You can find her on Twitter at @BethMundySci.

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HOT Articles: June

We are pleased to share a selection of our referee-recommended HOT articles for June. We hope you enjoy reading these articles and congratulations to all the authors whose articles are featured! As always, Chemical Science is free to read & download. You can find our full 2020 HOT article collection here.

 

Mapping protein–polymer conformations in bioconjugates with atomic precision
Kevin M. Burridge, Ben A. Shurina, Caleb T. Kozuszek, Ryan F. Parnell, Jonathan S. Montgomery, Jamie L. VanPelt, Nicholas M. Daman, Robert M. McCarrick, Theresa A. Ramelot, Dominik Konkolewicz and Richard C. Page
Chem. Sci., 2020, 11, 6160-6166
DOI: 10.1039/D0SC02200D

D0SC02200D

 

Methylbismuth: an organometallic bismuthinidene biradical
Deb Pratim Mukhopadhyay, Domenik Schleier, Sara Wirsing, Jacqueline Ramler, Dustin Kaiser, Engelbert Reusch, Patrick Hemberger, Tobias Preitschopf, Ivo Krummenacher, Bernd Engels, Ingo Fischer and Crispin Lichtenberg
Chem. Sci., 2020, Advance Article
DOI: 10.1039/D0SC02410D

10.1039/D0SC02410D

 

Formicamycin biosynthesis involves a unique reductive ring contraction
Zhiwei Qin, Rebecca Devine, Thomas J. Booth, Elliot H. E. Farrar, Matthew N. Grayson, Matthew I. Hutchings and Barrie Wilkinson
Chem. Sci., 2020, Advance Article
DOI: 10.1039/D0SC01712D

 

Unravelling the intricate photophysical behavior of 3-(pyridin-2-yl)triimidazotriazine AIE and RTP polymorphs
Elena Lucenti, Alessandra Forni, Andrea Previtali, Daniele Marinotto, Daniele Malpicci, Stefania Righetto, Clelia Giannini, Tersilla Virgili, Piotr Kabacinski, Lucia Ganzer, Umberto Giovanella, Chiara Botta and Elena Cariati
Chem. Sci., 2020, Advance Article
DOI: 10.1039/D0SC02459G

10.1039/D0SC02459G

 

Molecular-level insight in supported olefin metathesis catalysts by combining surface organometallic chemistry, high throughput experimentation, and data analysis
Jordan De Jesus Silva, Marco A. B. Ferreira, Alexey Fedorov, Matthew S. Sigman and Christophe Copéret
Chem. Sci., 2020, Advance Article
DOI: 10.1039/D0SC02594A

D0SC02594A

 

Conformationally Adaptable Macrocyclic Receptors for Ditopic Anions: Analysis of Chelate Cooperativity in Aqueous Containing Media
Stuart N. Berry, Lei Qin, William Lewis and Katrina A. Jolliffe
Chem. Sci., 2020, Accepted Manuscript
DOI: 10.1039/D0SC02533J

10.1039/D0SC02533J

Templating S100A9 amyloids on Aβ fibrillar surfaces revealed by charge detection mass spectrometry, microscopy, kinetic and microfluidic analyses
Jonathan Pansieri, Igor Iashchishyn, Hussein Fakhouri, Lucija Ostojić, Mantas MM Malisauskas, Greta Musteikyte, Vytautas Smirnovas, Matthias M. Schneider, Tom Scheidt, Catherine K. Xu, Georg Meisl, Ehut Gazit, Rodolphe Antoine and Ludmilla A. Morozova-Roche
Chem. Sci., 2020, Accepted Manuscript
DOI: 10.1039/C9SC05905A

10.1039/C9SC05905A
 

Chemical Science, Royal Society of Chemistry

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Welcome to Associate Editor Shu-Li You

We would like to wish a very warm welcome to our new Chemical Science Associate Editor Professor Shu-Li You!

 

 

Professor Shu-Lli You was born in Henan, China, and received his BSc in chemistry from Nankai Univ. in 1996. He obtained his PhD from Shanghai Institute of Organic Chemistry (SIOC) in 2001 under the supervision of Prof. Lixin Dai before doing postdoctoral studies with Prof. Jeffery Kelly at The Scripps Research Institute. From 2004, he worked at the Genomics Institute of the Novartis Research Foundation as a PI before returning to SIOC as a Professor in 2006. He is currently appointed as the director of the State Key Laboratory of Organometallic Chemistry of SIOC, and the deputy director of SIOC.

His research interests mainly focus on asymmetric C-H functionalization and catalytic asymmetric dearomatization (CADA) reactions. He is a Fellow of the Royal Society of Chemistry, and the recipient of RSC Merck Award (2015) and Ho Leung Ho Lee Foundation Prize for Scientific and Technological Innovation (2016).

 

Browse a selection of Shu-Li’s work below:

Chiral phosphoric acid-catalyzed asymmetric dearomatization reactions
Zi-Lei Xia, Qing-Feng Xu-Xu, Chao Zheng and Shu-Li You
Chem. Soc. Rev., 2020, 49, 286-300
DOI: C8CS00436F, Review Article

Catalytic asymmetric dearomatization (CADA) reaction-enabled total synthesis of indole-based natural products
Chao Zheng and Shu-Li You
Nat. Prod. Rep., 2019, 36, 1589-1605
DOI: C8NP00098K, Review Article

Palladium-catalyzed intermolecular allenylation reactions of 2,3-disubstituted indoles and allenyl carbonate
Yizhan Zhai, Shu-Li You and Shengming Ma
Org. Biomol. Chem., 2019, 17, 7128-7130
DOI: C9OB01435G, Communication

Highly efficient synthesis and stereoselective migration reactions of chiral five-membered aza-spiroindolenines: scope and mechanistic understanding
Qing-Feng Wu, Chao Zheng, Chun-Xiang Zhuo and Shu-Li You
Chem. Sci., 2016, 7, 4453-4459
DOI: C6SC00176A, Edge Article
Chemical Science, Royal Society of Chemistry

Submit to Chemical Science today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

Keep up to date with our latest articles, reviews, collections & more by following us on Twitter. You can also keep informed by signing up to our E-Alerts.

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