Archive for the ‘Hot Articles’ Category

Superpowers ahoy! Electric field causes DNA mutations

What can cause a mutation in DNA?  Well, if you were to ask the Incredible Hulk (nicely), he would probably say– well not a lot, he’s more of a doer, but Bruce Banner might tell you gamma rays.  But that is so 20th century.

In a Communication recently published in ChemComm, José Pedro Pedro Cerón-Carrasco (Université de Nantes) and Denis Jacquemin (Institut Universitaire de France) have shown that DNA can mutate permanently if an appropriate external electric field is applied.

Application of the right level of electric field can lead to proton transfer, which can cause the formation of tautomers, i.e. isomers of the DNA bases.  By interfering with the bases and their interaction, a mismatch or mutation can be induced.

Turn the power up a little more and soon I will become Science Girl!: The DNA tautomers form under the influence of an external electric field. Circles indicate the protons that have been shifted compared to the canonical structure: H1 in blue and H2 in red.

Cerón-Carrasco and Jacquemin used a computational model to assess the effects of both positive and negative external electric fields on a DNA model to achieve an in vivo-like outcome.  When applying an increasing strength of negative electric fields, they saw the more acidic H1 proton shift to the other base; intense positive fields activated the H2 proton.

The authors conclude that intense electric fields might damage DNA in a partially controlled way.  This could have exciting applications for biochemistry or medicine– for example, selectively mutating a disease-causing cell.  Or maybe, bestowing me with superpowers…

Interested in more?  Read this HOT ChemComm article in full!

Electric field induced DNA damage: an open door for selective mutations
José Pedro Pedro Cerón-Carrasco and Denis Jacquemin
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC42593B

Sarah Brown is a guest web-writer for Chemical Communications.  Sarah hung up her lab coat after finishing her PhD and post-doctorate in nanotechnology for diagnostics and therapeutics to become an assistant editor at the BMJ Publishing Group.  When not trying to explain science through ridiculous analogies, you can often find her crocheting, baking and climbing, but not all at once.


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Simple synthesis of heavy oxygen-labelled alcohols

Rozen and co-workers report a novel and extremely simple method for synthesising 18O-labelled alcohols using commercial boronic acids and a reagent prepared from elemental fluorine.

Alcohols labelled with 18O are very valuable as biological probes for a variety of studies which are often limited by the availability of labelled precursors for use in the synthesis of the compounds of interest.

Scientists in Israel prepared an 18O-labelled acetonitrile complex of hypofluorous acid by simply bubbling dilute F2 through acetonitrile and 18O-labelled water. They performed a series of reactions of this complex with a variety of aliphatic and aromatic boronic acids at room temperature to produce a series of 18O-labelled alcohols within just a few minutes and in excellent yields – generally upwards of 90 per cent.

Read this ‘HOT’ ChemComm Communication for free:

The first general route for efficient synthesis of 18O labelled alcohols using the HOF⋅CH3CN complex
Shlomo Rozen, Julia Luria and Inna Vints
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC42337A

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Super Glue for cells

Red blood cells

Scientists in Canada have made a super-strong cell membrane adhesive and used it to stick red blood cells together. The polymer, based on the phospholipid head group phosphatidyl choline, could be used to secure cells in particular positions for tissue engineering and wound closure.

Don Brooks, from the Centre for Blood Research at the University of British Columbia, who led the study, says inspiration for the work came after trying to understand the chemistry of cell membranes. ‘Phosphatidyl choline [PC] is found in every cell membrane, except for some primitive bacteria, so we wondered what would happen if we were to turn the molecule around to choline phosphate [CP]? Would you get an adhesive effect because the positive and negative charges are now inverted?’ This proved to be the case, and the team demonstrated that branched polyglycerols containing CP bound to a variety of cell membranes

Read the full article in Chemistry World

Read the original journal article in ChemComm:
ATRP synthesis of poly(2-(methacryloyloxy)ethyl choline phosphate): a multivalent universal biomembrane adhesive
Xifei Yu, Xiaoqiang Yang, Sonja Horte, Jayachandran N. Kizhakkedathu and Donald E. Brooks 
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC41895B, Communication

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HOT ChemComm articles for May

Glucose-triggered release using enzyme-gated mesoporous silica nanoparticles
Elena Aznar, Reynaldo Villalonga, Cristina Giménez, Felix Sancenón, María Dolores Marcos, Ramon Martinez-Manez, Paula Díez, Jose M Pingarron and Pedro Amoros del Torro
Chem. Commun., 2013, Accepted Manuscript
DOI:10.1039/C3CC42210K

Free to access until 23rd June 2013


Cover and uncover: chiral switching exploiting templating and layer by layer grafting
Mahadeo Halhalli and Börje Sellergren
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC41989D

Free to access until 23rd June 2013


Target-selective photo-degradation of verotoxin-1 and reduction of its cytotoxicity to Vero cells using porphyrin-globotriose hybrids
Atsushi Okochi, Shuho Tanimoto, Daisuke Takahashi and Kazunobu Toshima
Chem. Commun., 2013, Accepted Manuscript
DOI:10.1039/C3CC42957A

Free to access until 23rd June 2013


1,1,n,n-tetramethyl[n](2,11)teropyrenophanes (n=7–9): a series of armchair SWCNT segments
Graham J. Bodwell, Kiran Sagar Unikela, Louise Nicole Dawe, David W Thompson and Bradley Lawrence Merner
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC43268H

Free to access until 23rd June 2013

Click here for more free HOT ChemComm articles for May!

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Metal organic frameworks for moisture-triggered fragrance release

The controlled release of fragrance molecules is of great interest in the development of fragranced products such as deodorants, as the volatility of the fragrance molecules can reduce the action of the product over time.  In this HOT ChemComm article, Jing Li and her group at Rutgers University, New Jersey have joined forces with researchers from Colgate-Palmolive Company to investigate using metal organic frameworks (MOFs) to take up and release fragrances in response to external stimuli.

frangrance release by MOFs

MOFs are a class of porous materials that are receiving a significant amount of research interest.  In particular, their ability to take up and store small molecules makes them an exciting prospect for storing gases, such as hydrogen, for catalysis and for drug delivery.

In this study, researchers examined the ability of some zinc based MOFs containing hydrophobic channels to take up and release the fragrances ethyl butyrate and D-limonene.  They found that the release of these fragrances could be triggered by moisture.

Importantly, both the hydrophilic ethyl butyrate and the hydrophobic D-limonene could be stored and released in this way, whereas leading encapsulation technologies based on modified starch are generally only useful for storing hydrophobic fragrances.  MOFs could therefore well find commercial applications for storing a wide range of fragrances.

Read this ‘HOT’ ChemComm article today!

Encapsulated recyclable porous materials: an effective moisture-triggered fragrance release system
John Vaughn, Haohan Wu, Bisera Efremovska, David H. Olson, Jairajh Mattai, Claudio Oritz, Allen Puchalski, Jing Li and Long Pan
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC41236A

Cally Haynes is a guest web-writer for ChemComm.  She is currently a post doctoral researcher  at the University of Southampton, and her research interests include the supramolecular chemistry of anions.  When not in the laboratory, she likes travelling and watching football.

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Nitrogen-containing graphene-like structures: Theory and experiment combine to reveal active sites

There is significant interest in nitrogen-containing electrocatalysts, driven by the need to find cost-effective and efficient material solutions for replacing platinum in polymer electrolyte membrane fuel cells.  However, the active sites of non-platinum group metal, oxygen reduction reaction electrocatalysts have been contentious for over 50 years.

Fortunately researchers are agreed that Metal(Me)-Nx centres may serve as possible active sites but whether it is Me-N2 or Me-N4 remains unresolved.  X-ray Photoelectron Spectroscopy (XPS) would be the ideal technique to answer this question if it didn’t rely on the use of reference spectra; none exist for the Me-N2 species which makes it less than ideal.

Fitting of DFT calculated curves to experimental results.

Kateryna Artyushkova, Plamen Atanassov and their team have overcome this problem by using density functional theory (DFT) to calculate the binding energy shifts of the species.  Calculating the binding energy shifts, rather than just the binding energies, allows the team to overcome the challenges associated with DFT calculations including; treatment of the core electrons and the poorly screened Coulomb potential near the nucleus.

Once validated, the DFT output can be used as input for XPS curve fitting.  This has revealed rearrangement around Cobalt-Nx centres in an oxidizing atmosphere and supports the understanding of these catalysts as vacancy-and-substitution defects in a graphene-like matrix.

This work demonstrates the synergy between experiment and theory which allows critical information to be extracted that might otherwise remain hidden.

For more, read this ChemComm article in full:

Density functional theory calculations of XPS binding energy shift for nitrogen-containing graphene-like structures
K. Artyushkova, B. Kiefer, B. Halevi, A. Knop-Gericke, R. Schlogl and P. Atanassov
Chem. Commun., 2013, 49, 2539-2541
DOI: 10.1039/C3CC40324F

Iain Larmour is a guest web-writer for ChemComm.  He has researched a wide variety of topics during his years in the lab including nanostructured surfaces for water repellency and developing nanoparticle systems for bioanalysis by surface enhanced optical spectroscopies.  He currently works in science management with a focus on responses to climate change.  In his spare time he enjoys reading and photography.

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X-ray nanoscopy of cobalt Fischer–Tropsch catalysts at work

Cobalt Fischer–Tropsch catalysts have been investigated in both 2-D and 3-D, by scientists in the Netherlands and the US, using in situ hard X-ray transmission X-ray microscopy (TXM). The FischerTropsch process is an important step in the production of liquid fuels from natural gas, biomass or coal.

Tomographic elemental mapping revealed the 3-D distribution of cobalt over the catalyst particles showing that cobalt is heterogeneously concentrated in the centre of the catalyst particles. 2-D chemical mapping allowed them to follow the chemical composition of the catalyst particles under reaction conditions.

This is the first time that this particular catalyst has been observed at the single particle level under reaction conditions, allowing the team to get a true picture of the deactivation of the catalyst which will provide information to help improve the catalyst’s productivity.

‘HOT’ Communication – read for free today:

X-ray Nanoscopy of Cobalt Fischer-Tropsch Catalysts at Work
Korneel Cats , Inés González-Jiménez , Yijin Liu , Johanna Nelson , Douglas van Campen , Florian Meirer , Ad M.J. van der Eerden , Frank M F de Groot , Joy C. Andrews and Bert Weckhuysen
Chem. Commun., 2013, DOI: 10.1039/C3CC00160A

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HOT ChemComm articles for April

Cleavable trifunctional biotin reagents for protein labelling, capture and release
Yinliang Yang and Steven H.L. Verhelst
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC42076K

Free to access until 26th May 2013


PCR based magnetic assembled sensor for ultrasensitive DNA detection
Chuanlai Xu
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC41674G

Free to access until 26th May 2013


ATRP synthesis of poly(2-(methacryloyloxy)ethyl choline phosphate): A multivalent universal biomembrane adhesive
Xifei Yu, Xiaoqiang Yang, Sonja Horte, Jayachandran N. Kizhakkedathu and Donald Brooks
Chem. Commun., 2013, Accepted Manuscript
DOI: 10.1039/C3CC41895B

Free to access until 26th May 2013

Click here for more free HOT ChemComm articles for April!

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ChemComm HOT articles for early 2013

Aptamer-targeted hyperbranched polymers: towards greater specificity for tumours in vivo
Daniel J. Coles, Barbara E. Rolfe, Nathan R. B. Boase, Rakesh N. Veedu and Kristofer J. Thurecht
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC00127J

C3CC00127J


Shape assisted fabrication of fluorescent cages of squarate based metal–organic coordination frameworks
Kolleboyina Jayaramulu, Katla Sai Krishna, Subi J. George, Muthuswamy Eswaramoorthy and Tapas Kumar Maji
Chem. Commun., 2013, Advance Article
DOI: 10.1039/C3CC39190F

C3CC39190F

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Gold nanoparticles reveal fingerprints

Gold nanoparticles capped with mercaptocarboxylic acids, followed by silver precipitation, have been used to develop latent fingerprints on paper as high quality negative images. Scientists writing in the journal ChemComm say that the effect stems from hydrogen bonding between the carboxylic group and the paper cellulose.

Recovering fingerprints from paper is a common task for forensic scientists, but often the developed marks are faint. A common approach, therefore, is to use a developing agent that sticks to the clean paper substrate, rather than the fingerprint itself, yielding a reversed image.

The technique described in this study is much less affected by sweat composition, and could improve the yield of latent fingerprints.

Read the ‘HOT’ ChemComm article today for free:

A novel approach to fingerprint visualization on paper using nanotechnology: reversing the appearance by tailoring the gold nanoparticles’ capping ligands
Sanaa Shenawi , Nimer Jaber , Joseph Almog and Daniel Mandler
Chem. Commun., 2013, DOI: 10.1039/C3CC41610K

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