Archive for September, 2020

Suppor(tin)g iron for catalytic ammonia formation

Dinitrogen fixation, i.e. converting abundant yet inert nitrogen gas into useable forms, has tantalised chemists for decades. One goal is the transformation of dinitrogen (N2) to ammonia using transition-metal catalysts under acidic and reducing conditions. Just a handful of complexes have been reported so far that can catalyse ammonia formation, and only a few of these are iron based, despite the prevalence of iron in the enzymes that can perform this process biologically. Researchers in the US have now discovered a new iron-based bimetallic system that can catalytically transform N2 to ammonia, providing additional studies that help understand this mechanism (Figure 1).

Iron complexes that catalyse ammonia formation from dinitrogen

Figure 1: Existing iron systems that can transform N2 to ammonia, and the tin-iron system in this study (bottom right)

The bimetallic system reported by the researchers is a tin-supported iron complex, analogous to other bimetallics previously studied in the group. Dinitrogen complexes were targeted since N2 coordination to a metal centre activates it towards further reactivity. The researchers prepared two tin-iron dinitrogen complexes, by either one or two electron reductions of a metal-bromide precursor (LSnFeBr) under a nitrogen atmosphere, to form the neutral LSnFe(N2) (1) or the anionic [LSnFe(N2)] (2), respectively. These complexes were characterised using a range of spectroscopic, electronic and structural techniques, which confirmed both coordination of N2 as well as a direct tin-iron interaction (Figure 2).

Characterisation of tin-iron dinitrogen complexes

Figure 2. A) X-ray crystal structures of tin-iron dinitrogen complexes 1 and 2. B) Characterisation of the N2 functionalisation product 3 with the crystal structure (left) and NMR spectra (right).

The further-reduced anionic species, 2, showed a greater extent of dinitrogen activation compared to the neutral species (1). This was determined by a lower infrared N-N stretching frequency and a longer N-N bond in the solid-state structure of 2, both of which indicate a weaker and more activated N-N bond. The researchers therefore selected 2 for further functionalisation reactivity, and found that the reaction with Me3SiCl (an electrophile) resulted in successful N2 functionalisation, forming the diazenido complex LSnFeN2SiMe3 (3). The diazenido complex was also characterised using a range of techniques (Figure 2b), with the solid-state structure clearly showing the silyl electrophile adding to the N2 ligand. Isolated diazenido complexes, like 3, are extremely rare in the literature, and the researchers attribute this apparent stability of 3 to the presence of the supporting tin centre within the bimetallic system. The importance of the tin-support in this system was further demonstrated by computational analyses of complexes 13, whereby the charge of the distal (and reactive) nitrogen correlated with the charge on the tin centre.

Scheme and table showing catalytic ammonia formation using tin iron complexes and other iron systems

Figure 3: Catalytic ammonia formation from N2 using the tin-iron complexes, with comparison to previously reported iron systems.

The researchers tested all three tin-iron complexes for catalytic ammonia formation, using [Ph2NH2]OTf as an acid and CoCp2* as a reducing agent (Figure 3). Both the neutral dinitrogen complex (1) and the diazenido complex (3) proved successful, with generating up to 5.9 turnovers of ammonia. Additionally, the comparable activity of 3 lends further support to the likely presence of a diazenido intermediate in the mechanism. A comparison with existing iron systems shows that the presence of an iron-support greatly enhances the catalysis compared to unsupported iron (see entry 8, Figure 3), indicating the significance of this metal-support and paving the way towards future catalyst design.

 

To find out more, please read:

Bimetallic iron–tin catalyst for N2 to NH3 and a silyldiazenido model intermediate

Michael J. Dorantes, James T. Moore, Eckhard Bill, Bernd Mienert and Connie C. Lu

Chem. Commun., 2020, 56, 11030-11033

 

Samantha Apps acknowledges Michael Dorantes, for proofreading this post, as well as Prof. Connie Lu and the Lu Lab as her colleagues over the last year.

 

About the blogger:

Dr. Samantha Apps just finished her post as a Postdoctoral Research Associate in the Lu Lab at the University of Minnesota, USA, and obtained her PhD in 2019 from Imperial College London, UK. She has spent the last few years, both in her PhD and postdoc, researching synthetic nitrogen fixation and transition metal complexes that can activate and functionalise dinitrogen. Outside of the lab, you’ll likely find her baking at home, where her years of synthetic lab training has sparked a passion in kitchen chemistry too.

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ChemComm Milestones – Zewei Quan

In 2017, Zewei Quan published his first independent research article ‘Mild synthesis of monodisperse tin nanocrystals and tin chalcogenide hollow nanostructures‘. We wanted to find out why Zewei chose to publish this work with ChemComm and how his research has progressed in 2020. Read more in the interview below.

What are the main areas of research in your lab and how has your research progressed since publishing your first article?
My research is mainly based on the design and synthesis of novel inorganic materials to understand their structures and promote their applications. Two classes of inorganic compounds, i.e., metal and metal halide in the form of nanocrystal or single crystal, are being actively explored in my group. We are keen to understand the underlying structure-property relationship of these intriguing materials at both atomic and mesoscale levels.

Since my first article in ChemComm, after I became a faculty, we have made a series of progresses in two main aspects. First, high pressure is adopted to investigate the structural responses at atomic level and the corresponding property variations under compression. As for metal halides with soft lattices, intriguing pressure-induced optical behaviors have been demonstrated, including band-gap narrowing in three-dimensional (3D) double perovskite of Cs2AgBiBr6, remarkable emission enhancement in one-dimensional (1D) cuprous halide complex of CsCu2I3, and emission color modulations in zero-dimensional (0D) hybrid metal halide, (bmpy)9[ZnBr4]2[Pb3Br11]. As for noble metal nanomaterials (Au and Pd), a series of pressure-induced phase transformations have been observed, to uncover their intrinsic phase stability and atomic movement path between different phases. Second, in addition to atomic structure, we are also interested in producing novel meosclae superstructures based on anisotropic nanoparticles and exploring their collective optical properties. Notably, well-defined nanodumbbells have been self-assembled into an orientationally ordered 2D degenerate crystal with a 6-fold symmetry, in which these NDs possess no translational order but three allowed orientations with a rotational symmetry of 120 degrees.

What do you hope your lab can achieve in the coming year?
In the coming year, we look forward to exploring the structure-dependent optical properties of 0D metal halides. The self-trapped exciton (STE) emission of these hybrid metal halides has several intriguing features, however, is still rarely investigated in past decades. We plan to utilize the high pressure method to understand the key factors in determining their STE emission characteristics including energy, intensity and quantum yield, and then design and prepare the target systems with appropriate structural parameters and desired optical properties.

Describe your journey to becoming an independent researcher.
After I received my B.Sc. degree from Wuhan University in 2004, I went to Changchun Institute of Applied Chemistry, Chinese Academy of Science to start my graduate study under the supervision of Prof. Jun Lin, and obtained my Ph.D. degree in 2009. My interest was mainly focused on the synthesis and characterization of high-quality luminescent nanocrystals. After that, I begun to work at SUNY Binghamton with Prof. Jiye (James) Fang, and then worked at Los Alamos National Laboratory with Dr. Hongwu Xu and Dr. James Boncella as an Oppenheimer Fellow. During this postdoctoral period, I enjoyed investigating the self-assembly behaviors of colloidal nanoparticles and the high-pressure structural variations of several typical nanocrystals. I have been a Professor of Chemistry at Southern University of Science and Technology (SUSTech) in Shenzhen, China since 2015.

What is the best piece of advice you have ever been given?
The best piece of advice for my career is “Be a super-postdoc to start your independent research”. When I had my own research group, in addition to teaching courses and writing proposals, I devoted most of my effort to constructing the lab, designing and performing the experiments, analyzing the data and writing the papers, like a super postdoc. This advice is very helpful to train the junior members with capabilities to perform their own research projects.

Why did you choose to publish your first article in ChemComm?
I chose to publish my first independent work in ChemComm, to present a mild synthesis method of monodisperse nanocrystals. ChemComm is a classical journal with a decent reputation, and the scope covers most fields in chemistry. I believe my work published in ChemComm would have a broad readership. Right now, I have two other papers published in ChemComm, and hopefully will have more soon.

Biography: Zewei Quan is currently a Professor in the Department of Chemistry at Southern University of Science and Technology (SUSTech). He obtained his Ph.D. in inorganic chemistry from Changchun Institute of Applied Chemistry, Chinese Academy of Sciences (with Prof. Jun Lin) in 2009. After that, he worked as a postdoctoral fellow and later a research scientist at the State University of New York at Binghamton with Prof. Jiye Fang (2009-2012). He then joined Los Alamos National Laboratory as an Oppenheimer Fellow (2012-2015). His current research interests include solution-phase synthesis, self-assembly, and high-pressure study of inorganic functional materials.
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ChemComm Milestones – Soumyajit Das

We’ve been enjoying getting to know the first-time authors who have decided to publish in ChemComm and we hope that you have too. This week, we spoke to Soumyajit Das who recently published his #ChemComm1st article: Revisiting indeno[2,1-c]fluorene synthesis while exploring the fully conjugated s-indaceno[2,1-c:6,5-c′]difluorene

Read about Soumyajit below

What are the main areas of research in your lab and what motivated you to take this direction?
We are working on π-conjugated molecules and materials, and wish to contribute to the field of polycyclic aromatic, antiaromatic and proaromatic hydrocarbons. We are currently engaged in extending the scope of fully conjugated indenofluorene (IF) isomers into the higher-order indacenodifluorene (IDF) isomers which are rare in literature. The motivation came from my earlier training in the field of conducting polymers and polyradicaloid hydrocarbons, in addition to the recent developments in the field of physical and synthetic organic chemistry associated with the organic semiconductors

Can you set this article in a wider context?
Our article is about a mild synthetic approach to synthesize the formally antiaromatic indeno[2,1-c]fluorene, an electron-accepting fragment of fullerene-C60 that showed promise in bulk-heterojunction devices, and extension of the same synthetic approach to construct the s-indaceno[2,1-c:6,5-c’]difluorene as the second constitutional isomer of the potentially tetraradicaloid s-indacenodifluorene (s-IDF) family. The IDF isomers may be viewed as two indenofluorene units conjoined through one shared benzene (outer) ring, and they represent the non-alternant isoelectronic motifs for synthetically challenging octacene considering the bonding picture of the outer conjugated circuit as [34]annulene. [2,1-c:6,5-c’]s-IDF showed smaller HOMO-LUMO and singlet-triplet (theoretical) energy gap compared to its first structural isomer s-indaceno[1,2-b:5,6-b’]difluorene. Consequently, a broad electronic absorption spectrum reaching the NIR region and NMR line broadening at elevated temperatures were also observed. Notably, only two IDF isomers (including ours) were now reported in the literature. Given the efficiency of our synthetic route and the interesting chemistry associated with the existing isomers, we are excited to develop the related unexplored non-benzenoid π-conjugated systems.

What do you hope your lab can achieve in the coming year?
I am still at an early stage of building my independent research career, and the current pandemic has already affected the research activity in the group. Publishing our first paper has already been a good achievement for us since we are just one-year-old group at IIT Ropar. I am hoping that the normal research activity in the laboratory resumes soon so we can explore many possibilities in the coming year including the extension of our present research findings. Since our research has the potential to be multidisciplinary, I am also exploring new research directions by finding collaborations with applied physicists and device engineers.

Describe your journey to becoming independent researcher.
After finishing my M.Sc. in chemistry in 2007 from IIT Guwahati (India), I joined Dr. Sanjio S Zade’s group at IISER Kolkata (India) to work on the zirconocene-mediated synthesis of novel heterocycles including their polymerizations. There I was attracted to the fascinating field of π-conjugated materials, and to further explore the field, I joined Prof. Jishan Wu’s group in the NUS Singapore in 2012 to work on the open-shell polycyclic hydrocarbons. To my delight, the findings of my postdoctoral research were published in some of the renowned high-impact journals, and naturally, I started applying for the academic positions in India from 2016 onward with a very optimistic mindset. I realized then how competitive it was to get an academic position. It took me almost 2.5 years to get the assistant professor position in IIT Ropar after finishing my postdoc, after a couple of rejections and failures. Meanwhile, I gained the industrial experience by working as a scientist in the medicinal chemistry units of Sai Life Sciences (2016-2018) and Aurigene (2018-2019). Perhaps the lack of job satisfaction in the industries and the keen desire to become an independent researcher kept me motivated to search for assistant professorship positions in Indian institutes/universities till my age eligibility was allowed, and I kept on applying for that. After joining IIT Ropar on March 2019, I quickly applied for the available funding opportunities and I am pleased to say that currently my research is funded by the Science and Engineering Research Board of India (SRG, 2019-2021) and the institute seed grant (ISIRD, 2019-2022). I look forward to building a vibrant and successful research group while continuing my journey.

What is the best piece of advice you have ever been given?
It’s tough to answer. Professionally, the good one was ‘work hard, but stay alert to unexpected things’, which I pass to my students too. Personally, when the failures hurt, my wife used to say ‘you failed because you have a better opportunity waiting, so don’t quit’.

Why did you choose to publish in ChemComm?
I chose ChemComm because it is renowned, having a high impact, and broad readership across all the chemical science subdisciplines. My first publication was ChemComm in 2010, and I am very glad to be a part of this journal again by contributing my research group’s first publication as the corresponding author.

Soumyajit’s Biography:

  • Assistant Professor: 03/2019 – Present, Indian Institute of Technology Ropar, India.
  • Senior Scientist: 03/2018 – 02/2019, Aurigene Discovery Technologies, Bangalore, India.
  • Research Scientist: 09/2016 – 02/2018, Sai Life Sciences, Pune, India.
  • Research Fellow: 03/2012 – 08/2016, National University of Singapore. Supervisor: Prof. Jishan Wu
  • Ph.D. in Chemistry: 11/2007 – 02/2012, Indian Institute of Science Education & Research Kolkata. Supervisor: Prof. Sanjio S. Zade

Follow Soumyajit on Twitter: @chmsdas

#ChemCommMilestones

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ChemComm Milestones – Yizhen Liu

Yizhen Liu published his first independent article with ChemComm in 2016. We wanted to find out more about Yizhen’s experience as a first-time author and what it was like to publish with our journal. Check out his #ChemComm1st article here: A DNA kinetics competition strategy of hybridization chain reaction for molecular information processing circuit construction.

Read more from Yizhen below:

What are the main areas of research in your lab and how has your research progressed since publishing your first article?
My laboratory mainly focus on DNA molecular circuits and biosensors related to DNA single base mutation detection. Based on DNA chain replacement and toehold exchange reaction, we constructed a series of DNA molecular logic devices (4 ChemComm in total). The first work reported DNA three-digit keypad lock, and then we successively constructed 4 to 2 encoders, computational redundant modules and three-bit molecular registers. In the work of the 4 to 2 encoder, for the first time we combined the logic judgment function of DNA circuit with the detection of single base mutation, so that the sensor based on hybridization analysis can not only recognize the presence of single base mutation, but also realize the information feedback of the mutation site region.

What do you hope your lab can achieve in the coming year?
In the coming year, we hope to make breakthroughs in specific enrichment and intelligent sensing of low abundance SINGLE base mutations in DNA.

Describe your journey to becoming independent researcher.
I obtained my Bachelor’s degree in Chemistry (2008) and Doctoral degree in Analytical Chemistry (2014) from Wuhan University. My doctoral thesis was on nucleic acid colorimetric sensing based on DNA gold nanoparticles and surface-enhanced Raman analysis method. During this process, I developed a strong interest in DNA circuits. Using molecules to build computing hardware can well combine my major with my hobby in computer science. Therefore, after I got recruited by Shenzhen University as an independent researcher, I focused more on the fields related to DNA nanotechnology, and by attending professional academic conferences and learning from excellent reports of domestic and foreign researchers, my understanding of this frontier field has sufficiently deepened. My first review invitation as an independent researcher also came from ChemComm. Being a reviewer has greatly helped me to stick to the current academic frontier and offered me inspiration in my research.

What is the best piece of advice you have ever been given?
As my father always teaches me that “details determine success or failure”, I am strict with myself in every thing I do in my work and life, paying attention to every detail and always thinking twice, which has indeed brought me many successes, big and small.

Why did you choose to publish your first article in ChemComm?
In fact, my first academic paper was published in ChemComm. ChemComm is very friendly to young researchers and encourages all kinds of novel ideas to be published, which impressed me a lot. In 2016, together with my sophomore students, I was very glad to publish my first paper (and the third one in my academic career) in ChemComm as an independent researcher. We modified the hybridization chain reaction to construct a molecule-level DNA three-digit keypad lock, and were honored to be selected as the outside front cover paper. This bond between ChemComm and my academic career has been continuously strengthened and I sincerely wish ChemComm a prosperous future!

Biography: Yizhen Liu is an Associate Professor of College of Chemistry and Enviromental Engineering at Shenzhen University. Liu obtained his BAchelor’s degree in Chemistry (2008) and Doctoral degree in Analytical Chemistry (2014) from Wuhan University. His thesis work with Prof. Jiming Hu focused on colorimetric and surface-enhanced Raman biosensors based on DNA gold nanoparticles. After receiving his PhD in 2014, he joined the College of Chemistry and Environmental Engineering at Shenzhen University to start his independent research. His current research interests include DNA logic circuits, DNA sensing methods and efficient solar seawater desalination technologies. Outside the lab, you might find him occasionally wandering the PUBG world, training in team leadership. Find him: yzliu@szu.edu.cn

 

 

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Capturing toxic gases with a recyclable porous material

Toxic gas removal is essential for preserving the safety of the public and the environment. Examples include gases such as ammonia (NH3) or carbon monoxide (CO) that can be lethal in just parts-per-million concentrations. Typically, removal of these gases is achieved using porous materials with high surface areas such as zeolites, and more recently covalent- or metal-organic frameworks (COFs or MOFs), which soak up the gases by adsorption to sites within the pores of the structure. Ideally such structures would also be recyclable, whereby the gas can be captured and then safely released without damage to the molecular framework of the material. A collaborative effort by researchers across the world has now demonstrated a recyclable strategy for ammonia adsorption by a MOF, using frustrated Lewis pair chemistry to achieve at least 5 cycles of gas capture and release.

SION105-Eu MOF structure

Figure 1. Left: the structure of SION105-Eu, showing its porous nature; right: the chemical structure of the anionic tctb linker ligand (tctb3-)

The researchers selected SION105-Eu as a highly stable MOF, which uses the triply anionic tctb linker that contains a sterically hindered Lewis acidic boron centre (Figure 1). Normally, ammonia (a Lewis base) will interact with a Lewis acidic boron centre to form a Lewis acid-base adduct. However, the steric demands around the Lewis-acidic boron in the tctb linker ligand prevent the formation of a true adduct with ammonia, instead forming a “frustrated Lewis pair” where the ammonia-boron interaction is considered reversible. This notion therefore allows for ammonia capture by adsorption in the MOF through interaction with the boron centre of the ligand, followed by subsequent ammonia release, since a permanent ammonia-boron interaction is prevented by the steric demands of the linker. Additionally, prevention of permanent adsorption of ammonia within the pores of the MOF prevents any possible collapse of the structure/decomposition, which further enhances the recyclability of the material.

The researchers measured the adsorption of ammonia by SION105-Eu by suspending the MOF in an aqueous solution of NH3 at ambient pressures (i.e. with a loose cap on the vial) or high pressures (with a closed vial cap). They observed up to 10 wt% adsorption in the ambient pressure system, and up to 36 wt% adsorption in the closed system (Figure 2, top). The researchers noted retention of the MOF crystallinity upon ammonia adsorption by powder X-ray diffraction measurements (PXRD), where the same pattern was observed before and after (Figure 2, bottom). The PXRD patterns in Figure 2 (bottom) also confirmed the weak, “frustrated Lewis pair” type interactions between the MOF and NH3, by the appearance of only two new peaks as shown in the squared regions of Figure 2 (bottom).

NH3 adsorption by SION105-Eu MOF

Figure 2. Top: Gravimetrically determined ammonia adsorption over time; bottom: powder XRD patterns before (blue) and after (red) ammonia adsorption

 

The recyclability of the MOF was tested by first allowing ammonia adsorption by suspension of the MOF in an ammonia solution for 6 hours, followed by ammonia release through heating the saturated MOF at 75 °C for 30 minutes. The researchers demonstrated this process could be achieved 5 times without change to the ammonia adsorption capacity or structure of the MOF. Overall, this study shows a new frustrated Lewis pair strategy for gas capture and release to render a MOF material recyclable, which has the potential to be applied beyond ammonia removal to other toxic gases.

 

To find out more, please read:

A recyclable metal–organic framework for ammonia vapour adsorption

Tu N. Nguyen, Ian M. Harreschou, Jung-Hoon Lee, Kyriakos C. Stylianou and Douglas W. Stephan

Chem. Commun., 2020, 56, 9600-9603

 

About the blogger:

Dr. Samantha Apps is a Postdoctoral Research Associate in the Lu Lab at the University of Minnesota, USA, and obtained her PhD in 2019 from Imperial College London, UK. She has spent the last few years, both in her PhD and postdoc, researching synthetic nitrogen fixation and transition metal complexes that can activate and functionalise dinitrogen. Outside of the lab, you’ll likely find her baking at home, where her years of synthetic lab training has sparked a passion in kitchen chemistry too.

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