Author Archive

A system to mimic the complexity of biological networks

A stimuli-responsive system that brings chemists one step closer to mimicking the complexity of biological networks has been developed by scientists in the UK, Australia and the US.

Biological systems are complicated as they can produce multiple responses to stimuli at the same time. The team says that the key to unravelling the origin of life may come from studying the complex interactions of molecules.

They have discovered a self-assembled cage molecule that consists of a system of interconverting diastereomers in solution. When anionic guest molecules are added, the system adapts, expressing a new combination of diastereomers that synergistically bind the guest molecules. Not only do the cage diastereomers interconvert, the volume of the individual cages adapts physically through the rotation of bonds, providing a tailored binding pocket for the guest lined with hydrogen-bond donors.

This two-fold adaptation is a feature of the responses to external stimuli displayed by biological systems, something that has not previously been observed in synthetic systems. Complex and functional synthetic systems of this type will lead to the design of more effective systems for host-guest recognition and the development of systems approaching the complexity of those that exist in nature.

Read the ‘HOT’ Chemical Science article today:

A Stimuli Responsive System of Self-Assembled Anion-Binding Fe4L68+ Cages
Jack Kay Clegg, Jonathan Cremers, Andrew J Hogben, Boris Breiner, Maarten M. J. Smulders, John D. Thoburn and Jonathan Nitschke
Chem. Sci., 2012, DOI: 10.1039/C2SC21486E

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Less is more for DNA reactions

A technique allowing the use of small amounts of DNA for efficient DNA-directed chemistry has been developed by scientists in Germany.

Oliver Seitz and Alexander Roloff at the Humboldt University of Berlin in Germany have made it possible to use incredibly small amounts of nucleic acids in important DNA-directed reactions.

DNA-directed chemistry is used in applications as diverse as nanowire synthesis and light harvesters to drug screening and diagnostics. This includes DNA-directed ligation reactions, in which two molecules are chemically joined. However, gaining enough of a particular DNA sequence from biological sources is challenging. Living organisms usually produce only small amounts and these may not be exactly uniform in nature.

The polymerase chain reaction (PCR) is the answer to this availability problem. PCR uses the enzyme polymerase to copy a small sample of DNA – the template – and make multiple copies of it with high accuracy and efficiency.

Read the full Chemistry World article or read the Chemical Science article in full:

Article Bioorthogonal reactions challenged: DNA templated native chemical ligation during PCR
Alexander Roloff and Oliver Seitz
Chem. Sci., 2012, DOI: 10.1039/C2SC20961F

Scheme of DNA templated native chemical ligation during PCR 

DNA templated native chemical ligation during PCR

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Plant power – Organocatalytic conversion of cellulose into a platform chemical

Viable alternatives to fossil fuels are a vital area of research for chemists as current deposits dwindle. To combat our reliance on these fuels, US scientists have discovered a new route for turning the carbohydrate cellulose – the most abundant organic molecule on Earth – into 5-(hydroxymethyl)furfural (HMF), a promising precursor molecule to alternative fuels.

Whereas conventional methods for converting carbohydrates into HMF have involved the use of harsh reaction conditions and toxic heavy metal catalysts, the route proposed by Ronald Raines and co-workers at the University of Wisconsin-Madison uses a one-pot, low temperature approach that utilises less toxic organocatalysts instead.  

Converting cellulose to HMF is a three-step process. It consists of hydrolysis of cellulose to glucose, isomerisation of glucose to fructose and dehydration of fructose to HMF. The hardest step is the transformation from glucose to fructose and it is difficult to achieve this without using a catalyst. So, the team used a phenylboronic acid organocatalyst combined with magnesium chloride and mineral acids to get HMF in yields of up to 54%, a yield comparable to using toxic heavy metal catalysts. Phenylboronic acids have some catalytic activity, but the magnesium chloride and mineral acids are needed to boost the efficiency of the conversion process.

View the whole Chemistry World article

Read the Chemical Science paper in full:

Organocatalytic conversion of cellulose into a platform chemical
Benjamin R. Caes , Michael J. Palte and Ronald T. Raines
Chem. Sci., 2013, DOI: 10.1039/C2SC21403B

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Super-resolution single-molecule imaging

This exciting article just published in Chemical Science by Professor W.E. Moerner and colleagues describes a novel method of introducing fluorophores of single-molecule quality into live bacterial cells for super-resolution imaging studies.

Single-molecule fluorescence imaging works by converting a dark fluorogen into a bright emitter. The really interesting aspect of this current study is that this conversion is achieved enzymatically. They have synthesised a nitro-aryl fluorogen (dark fluorogen) which is converted by a nitroreductase enzyme into a push-pull red-emitting fluorophore (bright emitter).

This new method allows the neutral dye molecule to enter the cell in a fluorescently ‘deactivated’ state. The substrate is then photoactivated by reaction with the enzyme, producing the fluorescent products – which is bright and detectable on the single-molecule level. The concentration can also be controlled by the level of substrate uptake – providing the opportunity for a variety of novel labeling systems.

The authors also present a detailed characterization of the spectral and photophysical properties of the fluorescent product, as well as the enzymatic kinetics in vitro.

Read the full article:
Enzymatic Activation of Nitro-Aryl Fluorogens in Live Bacterial Cells for Enzymatic Turnover-Activated Localization Microscopy
Marissa K. Lee, Jarrod Williams, Robert Twieg, Jianghong Rao and W.E. Moerner
Chem. Sci., 2012, DOI: 10.1039/C2SC21074F

Take a look at the high-quality physical chemistry research recently published in Chemical Science:

Vibrationally resolved dynamics of the reaction of Cl atoms with 2,3-dimethylbut-2-ene in chlorinated solvents
Fawzi Abou-Chahine, Stuart Greaves, Greg Dunning, Andrew Orr-Ewing, Gregory M Greetham, Ian P Clark and Michael Towrie
Chem. Sci., 2012, DOI: 10.1039/C2SC21267F

Nanomechanical properties of molecular-scale bridges as visualised by intramolecular electronic energy transfer
Anthony Harriman, Effat Bahaidarah, Raymond Ziessel, Mohammed Alamiry and Delphine Hablot
Chem. Sci., 2012, DOI: 10.1039/C2SC21505E

Role of conformational structures and torsional anharmonicity in controlling chemical reaction rates and relative yields: butanal + HO2 reactions
Jingjing Zheng, Prasenjit Seal and Donald G. Truhlar
Chem. Sci., 2013, DOI: 10.1039/C2SC21090H

Tridentate Cobalt complexes as alternate redox couples for high efficiency Dye Sensitized Solar Cells
Ben Aribia Kais, Thomas Moehl, Shaik M Zakeeruddin and Michael Gratzel
Chem. Sci., 2012, DOI: 10.1039/C2SC21401F

Cu2O|NiOx nanocomposite as an inexpensive photocathode in photoelectrochemical water splitting
Chia-Yu Lin, Yi-Hsuan Lai, Dirk Mersch and Erwin Reisner
Chem. Sci., 2012, DOI: 10.1039/C2SC20874A

Perspective
Impurities in graphenes and carbon nanotubes and their influence on the redox properties
Martin Pumera, Adriano Ambrosi and Elaine Lay Khim Chng
Chem. Sci., 2012, DOI: 10.1039/C2SC21374E

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New way to make 2-arylphenols – used in sensors and biologically active substances

A new way to make 2-arylphenols, which are found in organocatalysts, sensors, phosphite ligands, and biologically active substances has been devised by scientists in the US.

Simple and cheap aryl chlorides can be used to directly arylate unprotected phenols without transition metals. This is the first general, regioselective intermolecular phenol ortho-arylation process that uses aryl chlorides as one of the coupling components. It is the most direct synthetic pathway to 2-arylphenols – no protecting group manipulations are required.

The team also made arylated binaphthol derivatives. Additionally, they have presented the shortest pathway to date for the synthesis of helicenes – one step from commercially available reagents.

Read this ‘HOT’ Chemical Science article today:

Divergent Reaction Pathways for Phenol Arylation by Arynes: Synthesis of Helicenes and 2-Arylphenols
T Truong and O Daugulis
Chem. Sci., 2012, DOI: 10.1039/c2sc21288a

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Speakers confirmed for ISACS 12: Challenges in Chemical Renewable Energy

Challenges in Chemical Renewable Energy (ISACS12)
3 – 6 September 2013, Cambridge, UK

Confirmed invited speakers at  include:

 Photovoltaics

  • Professor Sir Richard Friend
    University of Cambridge, UK
  • Professor Tobin J. Marks
    Northwestern University, USA

Solar Fuels

  • Professor Daniel G. Nocera
    MIT (Massachusetts Institute of Technology), USA
  • Professor Harry B. Gray
    Caltech (California Institute of Technology), USA
  • Professor Dr Holger Dau
    Freie Universität Berlin, Germany
  • Professor Emily A. Carter
    Princeton University, USA

New battery materials

  • Professor Jean-Marie Tarascon
    University of Picardie Jules Verne, France
  • Professor Yang Shao-Horn
    MIT (Massachusetts Institute of Technology), USA
  • Professor Peter G. Bruce
    University of St Andrews, UK

Fuel cells

  • Professor Sossina M. Haile
    Caltech (California Institute of Technology), USA
  • Professor Fraser A. Armstrong
    University of Oxford, UK
  • Professor Ib Chorkendorff
    Technical University of Denmark

Molecular catalysis including bioinspired

  • Professor Shunichi Fukuzumi
    Osaka University, Japan
  • Professor Licheng Sun
    KTH Royal Institute of Technology, Sweden
  • Professor Matthias Beller
    Leibniz-Institut für Katalyse, Germany

ISACS 12 is now open for oral abstract submissions – submit your abstract for this exciting conference.

For more information visit the ISACS 12 website.Oral abstract deadline 3 May 2013
Poster abstract deadline 21 June 2013
Early bird registration deadline 12 July 2013

Important Deadlines:

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New coating for anticancer compounds improves generation of cancer-killing singlet oxygen

Phthalocyanines (Pcs) have excellent electronic and optical properties, which make them promising as a photosensitisers (PSs) for photodynamic therapy (PDT). Since Pcs strongly and selectively absorb light in the range of 600-800nm, they allow high penetration depth of light in normal tissue while minimising the risk and complications such as burning. But Pcs are highly hydrophobic and tend to form aggregates in aqueous media, which reduces their therapeutic activity.

Various types of nanocarriers, such as micelles, liposomes and nanoparticles, have been used to overcome this problem, and to prepare a stable dispersion of Pc in aqueous solution. However, most of them still suffer from shortcomings such as poor loading of Pc (small weight % of Pc in nanocarriers), risk of payload leaking before reaching target cells, and laborious, time-consuming fabrication and encapsulation processes.

Scientists in the Republic of Korea have made ZnPc nanospheres in one pot without using any templates or emulsifiers. They can be post-synthetically modified to improve their dispersibility in aqueous solution without altering their morphology or properties. They show higher singlet oxygen generation efficiency and in vitro phototoxicity than monomeric Pc molecules, suggesting that they are potentially useful as a photosensitiser for photodynamic therapy.

Targeting ligands could be introduced to deliver the nanospheres to specific target sites, anticipate the researchers. And if therapeutic agents were encapsulated, they could perform dual chemo- and photodynamic therapy.

Read this ‘HOT’ Chemical Science article:

Self-assembled, covalently linked, hollow phthalocyanine nanospheres
Raghunandan Hota, Kangkyun Baek, Gyeongwon Yun, Youngkook Kim, Hyuntae Jung, Kyeng Min Park, Eunjin Yoon, Taiha Joo, Juseok Kang, Chan Gyung Park, Su Mi Bae, Woong Shick Ahn and Kimoon Kim
Chem. Sci., 2012, DOI: 10.1039/C2SC21254D

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Super imaging of living cells

A new method of introducing single-molecule-quality fluorophores into live bacterial cells for superresolution imaging studies has been developed by researchers in the US.

Superresolution imaging can image structures with a spatial resolution 5 to 10 times smaller than the diffraction limit of about 200nm for visible wavelengths. In contrast to previous ideas, the team allows a permeable dye molecule (the substrate) to enter the cell in a fluorescently deactivated state.

Subsequent photoactivation by reaction with the enzyme nitroreductase produces fluorescent products whose concentration is controlled by the level of substrate uptake. Importantly, fluorophores can enter living cells fairly easily because they are neutral, and they emit at long wavelengths to avoid autofluorescence.

Read this ‘HOT’ Chemical Science article today:

Enzymatic Activation of Nitro-Aryl Fluorogens in Live Bacterial Cells for Enzymatic Turnover-Activated Localization Microscopy
Marissa K. Lee, Jarrod Williams, Robert Twieg, Jianghong Rao and W.E. Moerner
Chem. Sci., 2012, DOI: 10.1039/C2SC21074F

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