Archive for November, 2010

Fingerprinting red wine

A sensor that can discriminate between different tannins and be used to fingerprint a wide variety of red wines to confirm their authenticity has been developed by US scientists. 

Eric Anslyn and colleagues at the University of Texas at Austin and University of California Davis have developed a sensor made with colour-changing indicators. They used the sensor to test wine samples from different vintners and managed to distinguish between specific flavonoids – chemicals found in fruit and vegetables, tea and red wine – in particular looking at tannins, which are responsible for colour, aging ability and texture. 

When wine is added to the sensor, the indicators are displaced, which results in a colour change that can be monitored and recorded. The team found that patterns emerged for different wine varietals. They tested Pinot Noir, Zinfandel, Beaujolais, Cabernet Sauvignon, Shiraz and Merlot and assigned signatures to each wine type. The team could also classify wines from the same varietal. They tested different brands of Shiraz (and Zinfandel in a separate study) and they were able to link the tannins to the genome of the specific grape. 

The sensor can assign signatures to different wine types and to wines within types

 

‘The ability to fingerprint mixtures of metabolic origin, without knowing their exact compositions, has huge potential for applications in medical diagnostics, environmental science and the food industry,’ says Anslyn. 

Kim Janda, a detection expert at the Scripps Research Institute in the US, has visions of the sensor being used for ‘biodefense purposes where rapid and accurate identification is at a premium.’ Janda adds: ‘if Anslyn improved the method further he could put sommeliers out of business!’ 

‘Product authenticity is an important issue with food and beverages, particularly with high value products such as wine,’ says Bob Dambergs, a senior research scientist at the Australian Wine Research Institute, Glen Osmond. ‘Flavonoid compounds define red wines and this study makes clever use of specific interactions of flavonoids with peptides to produce a sensor array with high discriminatory power. Most wine producing countries have strict label-integrity regulations to protect consumers – the availability of rapid analysis methods utilising chemical sensors will facilitate compliance monitoring.’

Fancy reading more? Then why not download and read the Chemical Science Edge Article for yourself, details can be found below:-

Discrimination of flavonoids and red wine varietals by arrays of differential peptidic sensors
Alona P. Umali, Sarah E. LeBoeuf, Robert W. Newberry, Siwon Kim, Lee Tran, Whitney A. Rome, Tian Tian, David Taing, Jane Hong, Melissa Kwan, Hildegarde Heymann and Eric V. Anslyn, Chem. Sci., 2011
DOI: 10.1039/c0sc00487a

  

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Bismuth medicines: insight into mechanism of action

Scientists have converted a protein from a pathogenic bacterium into a FRET-based fluorescent probe to help find out why bismuth therapeutics can treat gastric illnesses.

Helicobacter pylori is a bacterium that colonises the digestive track and causes chronic gastritis, ulcers and even some gastric cancers. Bismuth-containing medicines are known treatments for H. pylori. It is thought that bismuth ions bind to metal binding sites in H. pylori’s metalloproteins but their exact mechanism of action is unknown.

Chuan He and colleagues at the University of Chicago investigated the metal binding properties of their FRET probe, made from the Hpn protein found in H. pylori, with different biometals in vitro. They showed that the sensor has a high affinity for Ni2+ and Zn2+ and moderate affinity for Bi3+. They then used the sensor in E. coli cells, which act as a model system for H. pylori, to measure uptake of these three ions. To their surprise, E. coli concentrated significant amounts of Bi3+, but not Ni2+ or Zn2+.

Graphical abstract: Metal-binding properties of Hpn from Helicobacter pylori and implications for the therapeutic activity of bismuth

If Bi3+ accumulates to similarly high levels in H. pylori, says He, it may target Hpn, eventually killing the bacteria.

Read the Edge article online today and let us know what you think of this work by leaving your comments below.

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Meet the General Chemistry team

The General Chemistry (ChemCommChem Soc Rev and Chemical Science) team will be attending a number of conferences in 2011. Here’s where you can meet up with us next year:
Robert Eagling (Editor) and Joanne Thomson (Deputy Editor)

Please do let us know if you will be attending any of these meetings – we’d love to meet you!

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Freezing the action in living things

A fast, high-resolution infrared imaging technique that can ‘freeze’ living specimens has been designed by UK scientists and tested on human ovarian cancer cells. The technique could lead to a better understanding of how cancer drugs work.

Infrared spectroscopy of cell images can be used in a number of fields including forensic science and cancer research. However, taking pictures of samples can take up to 12 hours. Chris Phillips and his team at Imperial College London have developed a technique to produce 2D images that takes a fraction of a second. By combining a purpose-built pulsed IR laser source with a charge-coupled device camera, rather like a digital camera, they were able to generate pictures 1011 times faster than current IR spectroscopic imaging methods. The IR source generates very short pulses (~100 psec) that keep the illumination levels below cell phototoxicity limits and allow moving specimens to be frozen in a way that mimics conventional flash photography.

Previous attempts to image cells in this way have required long illumination times, which causes the cells to move away from the light source or can kill them. ‘Because you can do it so quickly, you can freeze the action in living things, and because you have so much more light signal, you can get right inside the cells to take chemical maps,’ says Phillips.

The sharpest focus cell images are visually selected for the cell-level spectroscopy analysis

Link to journal article
Ultrafast infrared chemical imaging of live cells
Hemmel Amrania, Andrew P. McCrow, Mary R. Matthews, Sergei G. Kazarian, Marina K. Kuimova and Chris C. Phillips
Chem. Sci., 2011, DOI: 10.1039/c0sc00409j

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Editor’s diary

Over the past week or two we’ve been writing the editorials for Chemical Science, ChemComm and Chem Soc Rev issue 1s, 2011. It seems strange to be wishing people a Happy New Year in October but the issues will be sent to the printers next month so we need to plan in advance. It has been great to reflect on all the success of 2010 – we’ve launched a new journal, published more articles than ever before…but I’ll stop there before I give too much away. All will be revealed in issue 1.

We’ve also been planning our conference attendance for next year. There are so many great events to choose from so it has been really difficult to narrow them down to a manageable and affordable number. We’ll of course be at the ISACS meetings in July and September but if you have any suggestions of where else we should be, please do let us know.

Particularly exciting during the past month has been a short Chemical Science information film we’ve been working on with Anne from the RSC communications team. Thankfully I was behind the scenes only but Robert (the Editor) gave a stellar performance on camera – Anne described him as “a natural”. The film will be screened at the RSC general assembly in November.

Please keep sending us your feedback and suggestions for Chemical Science, ChemComm and Chem Soc Rev. You can leave comments below or email me.

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Chemical Science issue 6 now online

The final issue for 2010 is now online and free to access.

Following the trend set by issues 1-5, issue 6 is jam-packed with the highest quality research from across the chemical science spectrum.

The issue contains a Perspective on the future perspectives of nonadiabatic chemical dynamics (Hiroki Nakamura et al) and a Mini review on continuous flow multi-step organic synthesis (Damien Webb and Timothy Jamison). It also features a couple of attractive covers highlighting two exciting Edge articles.

Outside front cover

Inside front cover

Sign up for the Chemical Science e-alert to be notified when issue 1, 2011, is available online.

Let your work shine in 2011 – submit to Chemical Science and be seen with the best.

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Catalytic capsids: the art of confinement

Confining enzymes in a small container increases overall reaction rates but the increase is independent of the number of enzymes encapsulated, claim scientists in the Netherlands. 

Jeroen Cornelissen, at the University of Twente, and colleagues used the capsid of the Cowpea Chlorotic Mottle virus to encapsulate enzymes, mimicking the crowded environment enzymes experience in a cell. They found that encapsulated enzymes have a higher activity than free enzymes, which they say is caused by the high confinement molarity of the enzyme and the increased collision rate with its substrate. 

Graphical abstract: Catalytic capsids: the art of confinement
Encapsulation of enzymes in the confined space of a virus capsid influences reaction rates

But increasing the number of enzymes inside the capsid does not increase the reaction rate, says Cornelissen. A capsid rarely contains more than one substrate molecule so one enzyme is sufficient to convert the substrate, he explains.

Want to learn more about the art of confinement? Read the Edge article for free online.

Do you feel confined by the page and colour restrictions placed on you by other journals? Experience the freedom of publishing with Chemical Science by submitting today.

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Building complex oxides layer-by-layer

The Ruddlesden-Popper structure is an archetypal structure in solid state chemistry, consisting of slabs of perovskite units separated by rock salt layers. But conventional high temperature oxide synthesis methods can’t be used to make these structures when the perovskite blocks are greater than three octahedral thick.

Now Matthew Rosseinsky, at the University of Liverpool, UK, and colleagues have exploited the capabilities of modern thin film deposition to grow an artificial metastable oxide where the perovskite block is six octahedral thick and is made of two distinct perovskite units.

Graphical abstract: Cation ordering within the perovskite block of a six-layer Ruddlesden-Popper oxide from layer-by-layer growth – artificial interfaces in complex unit cells

Find out more in their Chemical Science Edge article and let us know your comments on the work below.

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A system that mimics the human nose

Scientists from Switzerland have created a system that mimics the way the human nose recognises scents.

Stefan Matile and colleagues from the University of Geneva made an artificial membrane that can distinguish between a range of odour molecules. Their ‘nose’ uses differential sensing, a form of molecular recognition, to recognise subtle structural differences between the molecules. ‘Our nose works by differential sensing in the membrane and differential sensing has been done almost everywhere except in the membrane,’ says Matile.

The human nose can distinguish over 10,000 different smells using 350 receptors. Smell molecules, known as an odorants, interact with the receptors to create an overall ‘fingerprint’ that is recognised by the brain. Matile’s system works by moving odorants across a lipid bilayer, an artificial cell membrane, using electrostatic interactions. Once across the membrane, this creates a fluorescent response, which is then measured to build up an electronic fingerprint of the smell. The team say they can distinguish a range of commercial perfumes using their nose.

Odour molecule

The artificial nose builds up a fingerprint of odour molecules

‘This highlights just how closely related this system is to the human system,’ says Jon Steed, an expert in supramolecular sensing at the University of Durham, Durham, UK, who adds: ‘You can adapt the chemistry to sense whatever you want.’

‘The applications are broad and very promising,’ says Matile. Steed adds that detection of low levels of molecules is important in many areas, for example in the detection of explosives or pollutants. Matile is now studying different forms of membrane transport in the system and how this affects its sensing capability.

Will Dennis

Read the full Edge article for free in Chemical Science.

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Top ten most accessed articles in September

This month sees the following articles in Chemical Science that are in the top ten most accessed:-

Dialkylbiaryl phosphines in Pd-catalyzed amination: a user’s guide 
David S. Surry and Stephen L. Buchwald 
Chem. Sci., 2010, Advance Article, DOI: 10.1039/C0SC00331J , Perspective 

DNA fluorocode: A single molecule, optical map of DNA with nanometre resolution 
Robert K. Neely, Peter Dedecker, Jun-ichi Hotta, Giedrė Urbanavičiūtė, Saulius Klimašauskas and Johan Hofkens 
Chem. Sci., 2010, 453-460, DOI: 10.1039/C0SC00277A , Edge Article 

Total synthesis of all (−)-agelastatin alkaloids 
Mohammad Movassaghi, Dustin S. Siegel and Sunkyu Han 
Chem. Sci., 2010, 561-566, DOI: 10.1039/C0SC00351D , Edge Article 

The organocatalytic three-step total synthesis of (+)-frondosin B 
Maud Reiter, Staffan Torssell, Sandra Lee and David W. C. MacMillan 
Chem. Sci., 2010, 37-42, DOI: 10.1039/C0SC00204F , Edge Article 

Catalytic asymmetric allylic alkylation employing heteroatom nucleophiles: a powerful method for C–X bond formation  
Barry M. Trost, Ting Zhang and Joshua D. Sieber 
Chem. Sci., 2010, 427-440, DOI: 10.1039/C0SC00234H , Perspective 

Palladium-catalyzed coupling of functionalized primary and secondary amines with aryl and heteroaryl halides: two ligands suffice in most cases 
Debabrata Maiti, Brett P. Fors, Jaclyn L. Henderson, Yoshinori Nakamura and Stephen L. Buchwald 
Chem. Sci., 2010, Advance Article, DOI: 10.1039/C0SC00330A , Edge Article 

Asymmetric Brønsted acid catalysis in aqueous solution  
Magnus Rueping and Thomas Theissmann 
Chem. Sci., 2010, 473-476, DOI: 10.1039/C0SC00206B , Edge Article 

Supramolecular hydrogel capsule showing prostate specific antigen-responsive function for sensing and targeting prostate cancer cells 
Masato Ikeda, Rika Ochi, Atsuhiko Wada and Itaru Hamachi 
Chem. Sci., 2010, 491-498, DOI: 10.1039/C0SC00278J , Edge Article 

Diamine ligands in copper-catalyzed reactions 
David S. Surry and Stephen L. Buchwald 
Chem. Sci., 2010, 13-31, DOI: 10.1039/C0SC00107D , Perspective 

Unified synthesis of enantiopure β2h, β3h and β2,3-amino acids  
Shouyun Yu, Hiroshi Ishida, M. Elisa Juarez-Garcia and Jeffrey W. Bode 
Chem. Sci., 2010, 637-641, DOI: 10.1039/C0SC00317D , Edge Article 

Why not take a look at the articles today and blog your thoughts and comments below.

Fancy submitting an article to Chemical Science? Then why not submit to us today or alternatively email us your suggestions.
  

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