Archive for the ‘Popular Advances’ Category

RSC Advances Popular Advances Interview with James Knight

We are excited to introduce Dr James Knight, who is the corresponding author of the RSC Advances article, The influence of degree of labelling upon cellular internalisation of antibody-cell penetrating peptide conjugates. The manuscript was well received by reviewers and was handpicked by our handling editors to be part of our Popular Advances collection.

Dr Knight told us more about the work that went into this paper and what he hopes to achieve in the future. You can explore other articles in our 2022 Popular Advances online collection here!

Meet the Author:

Dr James Knight is lecturer in radiochemistry at the School of Natural and Environmental Sciences at Newcastle University. His research surrounds the synthesis and preclinical evaluation of radiopharmaceuticals for imaging and therapeutic applications. Additionally, he is the Degree Programme Director for MSc Drug Chemistry and the lead for radiochemistry within the Discovery of Medicines research theme in the Faculty of Medical Sciences. Interestingly, he also recently co-authored two textbooks on click chemistry and its role in radiochemistry!

The first author, Toni Pringle, is a PhD student who led the research in this paper!

Could you briefly explain the focus of your article to the non-specialist and why it is of current interest?
In the present era of precision medicine, antibodies have emerged as an important class of highly target-specific therapeutic drugs, particularly in oncology, yet their inefficient cellular internalisation limits their scope of application to disease targets situated on the exterior side of the cell membrane. This article is based on research led by PhD student Toni Pringle who modified Herceptin (an antibody used to treat HER2-positive breast and gastric cancers) with a peptide that confers cell-penetrating properties and examined how the extent of this modification affected the uptake of Herceptin in human breast cancer cells, resulting in data that advances our understanding of the cell-internalising properties of these constructs.

How big an impact could your results potentially have?
The results of our study shine a light on the significant influence of a fundamental molecular design parameter – the degree of cell-penetrating peptide labelling. Notably, we found that a radiolabelled analogue of Herceptin modified with five cell-penetrating peptides had uptake in HER2-expressing cells 14.7-fold higher after 48 hours compared to an equivalent analogue with no peptide modification. The scale of this enhancement is exciting when you consider its implications for enhancing the therapeutic index of antibody-drug conjugates, as well as its potential to expand the scope of antibody-based positron emission tomography imaging agents to include disease biomarkers located in the intracellular environment.

Could you explain the motivation behind this study?
The main focus of our research is the development of radiopharmaceuticals that can be used as imaging and/or therapeutic agents for cancer. We are particularly interested in radiopharmaceuticals based on antibody-cell penetrating peptide conjugates (Ab-CPPs) and our motivation in this case was to understand the extent to which cellular internalisation of cancer target-specific Ab-CPP is affected by the degree of peptide labelling. Our group is keen to expand in this area and we felt it was crucial to get a firm handle on this important parameter.

In your opinion, what are the key design considerations for your study?
To allow us to determine the degree of peptide labelling, we decided to use a bioconjugation strategy based on strain-promoted alkyne-azide cycloaddition as this provided a convenient way to measure this parameter by depletion of the alkyne absorbance in the UV region. We also had to think carefully about how to approach the cell-based assays which were fairly complex due to the need to consider several factors, such as the specific activity of the radiolabelled Ab-CPPs, cell numbers and how these would change over the course of the experiment (and how to account for this), the sensitivity of the gamma counter, and of course, radio-protection measures at each stage etc. I must say that Toni did a fabulous job here in the planning and implementation of these experiments.

Which part of the work towards this paper proved to be most challenging?
Working with radioisotopes can be challenging as the agents we put so much effort into making are continually and irretrievably disappearing from the moment we make them! As a result, we have to plan our work very carefully, and often this involves coordinating the activities of several people!

What aspect of your work are you most excited about at the moment?
Radiochemistry and imaging at Newcastle University is thriving and enjoying a period of expansion. The imminent opening of our radiopharmaceutical GMP suite will grant us the ability to readily translate our probes into the clinic, and we have a dedicated network of academics and clinicians supporting us in this endeavour. For me, this is an incredibly exciting prospect!

What is the next step? What work is planned?
We’re taking this forward in two ways. First, we are applying this approach to antibody-drug conjugates to examine the influence of DOL upon therapeutic efficacy in target cell populations. Second, we are developing PET radioligands based on Ab-CPPs to target intracellular biomarkers that arise early in the development of pancreatic cancer to facilitate early detection. In each case, we are applying new, improved cell penetrating peptides. We are looking forward to sharing the results of these investigations soon!

 

The influence of degree of labelling upon cellular internalisation of antibody-cell penetrating peptide conjugates.

Graphical abstract: The influence of degree of labelling upon cellular internalisation of antibody-cell penetrating peptide conjugates

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September 2022 Popular Advances Articles

Welcome to September’s Popular Advances article round up!

Every month we update our 2022 RSC Advances Popular Advances Article Collection to showcase all of the articles selected by our reviewers and handling editors as Popular Advances in 2022. Don’t forget to come back next month to check out our latest Popular articles.

We hope you enjoy reading and as always, all of our articles are open access so you can easily share your favourites online and with your colleagues.

Explore the full collection!

Efficient and practical synthesis of monoalkyl oxalates under green conditions
Tatiana Barsukova, Takeyuki Sato, Haruki Takumia and Satomi Niwayama
RSC Adv., 2022,12, 25669-25674

A simple and direct ionic chromatography method to monitor galactose oxidase activity
Eden Kaddouch, Maria E. Cleveland, David Navarro, Sacha Grisel, Mireille Haon, Harry Brumer, Mickaël Lafond, Jean-Guy Berrin and Bastien Bissaro
RSC Adv., 2022,12, 26042-26050

Enhanced transformation of CO2 over microporous Ce-doped Zr metal–organic frameworks
Juan Bai, Ziwei Song, Lijuan Liu, Xu Zhu, Faming Gao and Raghunath V. Chaudhari
RSC Adv., 2022,12, 26307-26318

Stereoselective synthesis of C3-tetrasubstituted oxindoles via copper catalyzed asymmetric propargylation
Jiao-Mei Wang, Yu Zhao, Chang-Sheng Yao and Kai Zhang
RSC Adv., 2022,12, 26727-26732

Synthesis and Hybridizing Properties of P Stereodefined Chimeric [PS]-{DNA:RNA} and [PS]-{DNA:(2’-OMe)-RNA} Oligomers
Katarzyna Jastrzębska, Anna Maciaszek, Rafał Dolot, Agnieszka Tomaszewska-Antczak, Barbara Mikołajczyk and Piotr Guga
RSC Adv., 2022, 12, 26815-26824

Antibacterial activity of the micro and nanostructures of the optical material tris(8-hydroxyquinoline)aluminum and its application as an antimicrobial coating
Abdu Saeed, Aysh Y. Madkhli, Rami Adel Pashameah, Noor M. Bataweel, Mir Ali Razvi and Numan Salah
RSC Adv., 2022,12, 27131-27144

The influence of degree of labelling upon cellular internalisation of antibody-cell penetrating peptide conjugates
Toni A. Pringle, Oliver Coleman, Akane Kawamura and James C. Knight
RSC Adv., 2022,12, 27716-27722

One-pot synthesis of chromenes in the presence of nano-cellulose/Ti(IV)/Fe3O4 as natural-based magnetic nano-catalysts under solvent free conditions
Raziyeh Gholami, Abdolhamid Bamoniri and Bi Bi Fatemeh Mirjalili
RSC Adv., 2022,12, 27555-27563

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RSC Advances Popular Advances – an Interview with Takashi Morii

We are very pleased to introduce Professor Takashi Morii, who is the corresponding author of the RSC Advances article, A two-step screening to optimize the signal response of an auto-fluorescent protein-based biosensor. The manuscript was well received by reviewers and was handpicked by our reviewers and handling editors to be part of our Popular Advances collection.

Professor Mori told us more about the work that went into this article and what he hopes to achieve in the future. You can explore other articles in our 2022 Popular Advances online collection here.

Meet the author:

Takashi Morii was born in 1959 in Hyogo, Japan. He studied Chemistry at Kyoto University (B. Eng., 1982, Ph.D. 1988) with Prof. T. Matsuura and Prof. I. Saito. He conducted postdoctoral research with Prof. J. K. Barton at Columbia University and California Institute of Technology. In 1992, he was appointed as an Assistant Professor at Kyoto Institute of Technology and subsequently moved to Institute for Chemical Research at Kyoto University. In 1998, he moved to Institute of Advanced Energy, Kyoto University, where he was promoted to Professor in 2005.

 

 

 

 

Could you briefly explain the focus of your article to the non-specialist (in one or two sentences only) and why it is of current interest? 

Construction of an auto-fluorescent protein (AFP)-based biosensor consisting of a recognition, or a reaction, module and AFP often encounters difficulty owing to the lack of structural information for the recognition module and requirement of laborious tasks for functional optimization. This study describes a two-step screening strategy that allows facile optimization of the optical response of AFP-based biosensor for nitric oxide (NO), which is also applicable for many types of AFP-based biosensors.

How big an impact could your results potentially have? 

Our two-step, first in silico and second in vitro, screening strategy provides a convenient and high-throughput screening method for the optimization of the signal response of AFP-based biosensors. Especially, our strategy has an advantage for cases when the detailed information on the structural change of recognition module is not available. AFP-based biosensors are quite useful in visualizing the dynamics of cellular important factors because of their suitability for high spatiotemporal resolution and long-time imaging. Our strategy would accelerate the development of various types of biosensors for the factors of interest in the cell.

Could you explain the motivation behind this study?

We have previously constructed a fusion of a segment of the putative NO-sensing module of the TRPC5 channel with enhanced green fluorescent protein (EGFP) to evaluate this putative NO-induced structural change in TRPC5. While the construct successfully detected the putative structural change by the reaction with NO as a change in the fluorescence intensity ratio of EGFP, the observed response was quite weak. We considered that the TRPC5 loop-EGFP construct could be converted to a cellular NO sensor by enhancing its response through the mutation and screening. In addition, developing a general strategy to construct AFP-based biosensors that visualize various kinds of second messengers would promote further investigation of signal transduction.

In your opinion, what are the key design considerations for your study?  

An AFP-based biosensor is designed by conjugating an appropriate recognition or reaction module for a given target to an AFP transduction module. Structural changes in the recognition module induced by the recognition/reaction event are transduced to a change of fluorescence signal of AFP. To obtain usable AFP-based biosensors, many sensor candidates must be constructed and evaluated their responses, which are time consuming and required laborious tasks. We consider that a screening to select candidates showing larger structural changes at the reaction module upon the reaction based on in silico simulation in the first step would reduce these tasks. Structural change of the reaction modules of candidates are evaluated by root-mean-square-deviation (RMSD) of the coordinates for the backbone of reaction module between before and after the reaction based on in silico simulation.

Which part of the work towards this paper proved to be most challenging? 

The most challenging part of this work is whether the in silico screening evaluated by using the RMSD values could select candidates with reasonable signal responses because it is very difficult to predict the exact structural change of candidates upon the reaction in silico. Fortunately, the second in vitro screening revealed that RMSD values could successfully provide indexes for the signal response of the candidates, although large RMSD values did not always correspond to the large signal response.

What aspect of your work are you most excited about at the moment? 

It was quite exciting to find that the sensor candidates from the first in silico screening showed enhanced signals in the in vitro second screening. It was also exciting to confirm that a construct obtained from the two-step screening showed a reasonable signal response in living mammalian cells. This result demonstrated that our screening strategy can be applied to enhance the signal response sufficient for cellular applications.

What is the next step? What work is planned?

The reaction module of selected AFP-based biosensor changes its structure upon formation of a disulphide bond to emit the signal. We anticipated a certain selectivity for the disulphide bond formation by NO, but apparently the selected AFP-based biosensor showed similar response to NO and H2O2. The next step is to develop a convenient strategy to install a selectivity to NO and H2O2 on the AFP-based biosensor selected in this work.

A two-step screening to optimize the signal response of an auto-fluorescent protein-based biosensor

Shunsuke Tajima,a Eiji Nakata,a Reiko Sakaguchi,b Masayuki Saimura,a Yasuo Moric and Takashi Morii*a

RSC Adv., 2022,12, 15407-15419

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August 2022 Popular Advances Articles

Welcome to August’s Popular Advances article round up!

Every month we update our 2022 RSC Advances Popular Advances Article Collection to showcase all of the articles selected by our reviewers and handling editors as Popular Advances in 2022. Don’t forget to come back next month to check out our latest Popular articles.

We hope you enjoy reading and as always, all of our articles are open access so you can easily share your favourites online and with your colleagues.

Explore the full collection!

Preparation of sodium silicate/red mud-based ZSM-5 with glucose as a second template for catalytic cracking of waste plastics into useful chemicals
Xiaofeng Wang, Fuwei Li, Asad Ali, Hengshuo Gu, Hongbing Fu, Zhixia Li  and Hongfei Lin
RSC Adv., 2022, 12, 22161-22174

Eight new phenolic acids from the leaves of Illicium dunnianum and their osteoprotective activities
Hai-bo Li, Sen-ju Ma, Ying-xin Shan, Ting Li, Zhen-zhong Wang, Wei Xiao, Zuo-cheng Qiu and Yang Yu
RSC Adv., 2022, 12, 21655-21661

Synthesis of novel benzothiazole derivatives and investigation of their enzyme inhibitory effects against Alzheimer’s disease
Şevval Karaca, Derya Osmaniye, Begum Nurpelin Sağlık, Serkan Levent, Sinem Ilgın, Yusuf Özkay, Ahmet Çağrı Karaburun, Zafer Asım Kaplancıklı and Nalan Gundogdu-Karaburun
RSC Adv., 2022, 12, 23626-23636

The remarkable performance of a single iridium atom supported on hematite for methane activation: a density functional theory study
Kefale Wagaw Yizengaw, Tigist Ayalew Abay, Delele Worku Ayele and Jyh-Chiang Jiang
RSC Adv., 2022, 12, 23736-23746

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July 2022 Popular Advances Articles

Welcome to July’s Popular Advances article round up!

Every month we update our 2022 RSC Advances Popular Advances Article Collection to showcase all of the articles selected by our reviewers and handling editors as Popular Advances in 2022. Don’t forget to come back next month to check out our latest Popular articles.

We hope you enjoy reading and as always, all of our articles are open access so you can easily share your favourites online and with your colleagues.

Explore the full collection!

Theoretical investigation of the optoelectronic response of highly correlated Cu3P photocatalyst,
Haseeb Ahmad, Ali Rauf and Shoaib Muhammad, RSC Adv., 2022,12, 20721-20726, DOI: https://doi.org/10.1039/D2RA02472A

Phenoxy pendant isatins as potent α-glucosidase inhibitors: reciprocal carbonyl⋯carbonyl interactions, antiparallel π⋯π stacking driven solid state self-assembly and biological evaluation,
Saba Mehreen, Mehwash Zia, Ajmal Khan, Javid Hussain, Saeed Ullah, Muhammad U. Anwar, Ahmed Al-Harrasi and Muhammad Moazzam Naseer, RSC Adv., 2022,12, 20919-20928, https://doi.org/10.1039/D2RA03307K

Submit to RSC Advances today! Check out our author guidelines for information on our article types or find out more about the advantages of publishing in a Royal Society of Chemistry journal.

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May & June 2022 RSC Advances Popular Advances Articles

Welcome to May & June’s Popular Advances article round up!

Every month we update our 2022 RSC Advances Popular Advances Article Collection to showcase all of the articles selected by our reviewers and handling editors as Popular Advances in 2022. Don’t forget to come back next month to check out our latest Popular articles.

We hope you enjoy reading and as always, all of our articles are open access so you can easily share your favourites online and with your colleagues.

Explore the full collection!

A two-step screening to optimize the signal response of an auto-fluorescent protein-based biosensor
Shunsuke Tajima, Eiji Nakata, Reiko Sakaguchi, Masayuki Saimura, Yasuo Moric and Takashi Morii
RSC Adv., 2022, 12, 15407-15419

N,N-Dimethylformamide-stabilized ruthenium nanoparticle catalyst for β-alkylated dimer alcohol formation via Guerbet reaction of primary alcohols
Tatsuki Nagata, Kanji Okada, Ryota Kondo, Takashi Toyao, Ken-ichi Shimizu, Takeyuki Suzuki and Yasushi Obora
RSC Adv., 2022, 12, 16599-16603

Metal- and base-free tandem sulfonylation/cyclization of 1,5-dienes with aryldiazonium salts via the insertion of sulfur dioxide
Xiaohong Wang, Fengzhi You, Baojian Xiong, Lei Chen, Xuemei Zhang and Zhong Lian
RSC Adv., 2022, 12, 16745-16750

Pyridine appended 2-hydrazinylthiazole derivatives: design, synthesis, in vitro and in silico antimycobacterial studies
Ramkishore Matsa, Parameshwar Makam, Guneswar Sethi, Ahammed Ameen Thottasseri, Aswani Raj Kizhakkandiyil, Krishna Ramadas, Vignesh Mariappan, Agieshkumar Balakrishna Pillai and Tharanikkarasu Kannan
RSC Adv., 2022, 12, 18333-18346

 

RSC Advances Royal Society of Chemistry

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April 2022 Popular Advances Articles

Welcome to April’s Popular Advances article round up!

Every month we update our 2022 RSC Advances Popular Advances Article Collection to showcase all of the articles selected by our reviewers and handling editors as Popular Advances in 2022. Don’t forget to come back next month to check out our latest Popular articles.

We hope you enjoy reading and as always, all of our articles are open access so you can easily share your favourites online and with your colleagues.

Explore the full collection!

Synthesis and evaluation of new chalcones and oximes as anticancer agents
Syed Nasir Abbas Bukhari
RSC Adv., 2022,12, 10307-10320

Linking heat and electricity supply for domestic users: an example of power-to-gas integration in a building
Emanuele Moioli
RSC Adv., 2022,12, 10355-10365

Rhabdastrenones A–D from the sponge Rhabdastrella globostellata
Do Thi Trang, Dan Thi Thuy Hang, Duong Thi Dung, Nguyen Thi Cuc, Pham Hai Yen, Phan Thi Thanh Huong, Le Thi Huyen, Nguyen Xuan Nhiem, Bui Huu Tai, and Phan Van Kiem
RSC Adv., 2022,12, 10646-10652

Comparison of mesoporous fractal characteristics of silica-supported organocatalysts derived from bipyridine-proline and resultant effects on the catalytic asymmetric aldol performances
Guangpeng Xu, Liujie Bing, Bingying Jia, Shiyang Bai, and Jihong Sun
RSC Adv., 2022,12, 10800-10814

Diverse and efficient catalytic applications of new cockscomb flower-like Fe3O4@SiO2@KCC-1@MPTMS@CuII mesoporous nanocomposite in the environmentally benign reduction and reductive acetylation of nitroarenes and one-pot synthesis of some coumarin compounds
Morteza Hasanpour Galehban, Behzad Zeyenizadeh, and Hossein Mousavi
RSC Adv., 2022,12, 11164-11189

RSC Advances Royal Society of Chemistry

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RSC Advances Popular Advances – an Interview with Ponnadurai Ramasami

We are very pleased to introduce Professor Ponnadurai Ramasami, who is joint corresponding author on the paper, Theoretical study of a derivative of chlorophosphine with aliphatic and aromatic Grignard reagents: SN2@P or the novel SN2@Cl followed by SN2@C?. The manuscript was well received by reviewers and was handpicked by our reviewers and handling editors to be part of our Popular Advances collection.  Ponnadurai told us more about the work that went into this article and what he hopes to achieve in the future. You can find out more about the authors and their article below. To view our other Popular Advances, please explore our collection here.

 

Professor Ponnadurai Ramasami, CSci, CChem, FRSC, FICCE, MMast, received his PhD in Physical Chemistry and became full Professor in 2013. He leads the Computational Chemistry Group, Department of Chemistry, Faculty of Science at the University of Mauritius. The research group focuses on the use of computational methods to solve chemistry and interdisciplinary problems. The group is particularly interested in collaborating with experimentalists, and they use computational methods to complement experimental research. He has already published 260 research papers in peer-reviewed journals and he has edited several books. He is the chairman of the annual Virtual Conference on Chemistry and its Applications.

 

 

 

 

 

Could you briefly explain the focus of your article to the non-specialist (in one or two sentences only) and why it is of current interest?

The focus of the article is the computational investigation of SN2 reactions in organic molecules which contain both phosphorus and chlorine atoms.

The SN2 reaction mechanism was discovered in the 1930’s by scientists Hughes and Ingold, and since then has been used in a number of syntheses; however, it is still of current interest as new aspects of this mechanism, at the molecular level, are still being discovered. These aspects include new sites of nucleophilic attack which are not immediately chemically intuitive.

How big an impact could your results potentially have?

In textbooks, SN2 reactions are defined in a firm way, often taking the example of SN2 at the carbon atom, detailing hill-shaped potential energy surfaces and nucleophilic attack at one specific atom centre. However, our research indicates that these well-established facts may change. Potential energy surfaces may take the shape of single, double or triple wells or a combination of hill and well shapes. The most preferred site of nucleophilic attack may change according to what neighbouring groups are present in the molecule of interest. It is important to include and try to explain these differences in chemistry textbooks.

Could you explain the motivation behind this study?

The Computational Chemistry Group of the University of Mauritius (CCUoM) was set up in 2003 in the Department of Chemistry. Our interest has always been on the investigation of different aspects of reaction mechanisms. We have a programme to study SN2 reaction mechanisms, which resulted in two PhD graduates and several publications. We started by studying the effect of different nucleophiles. Another part of the programme involved studying SN2 reactions at different atoms within one molecule. This started in 2017, when we came across one experimental study which involved SN2 at the phosphorus atom. We tried to explain the results of this experimental study using computational methods, which led us to discover SN2 at the chlorine atom.

In your opinion, what are the key design considerations for your study?

For SN2 reactions, the key design considerations involve the reactive atom centres, neighbouring groups, the solvent and the nucleophiles. These may be used to tune reactions to design molecules of interest.

Which part of the work towards this paper proved to be most challenging?

Working with bulky molecules was the most challenging part. Computations involving bulky molecules are demanding in terms of computational cost. It is often challenging to strike the right balance between computational cost and accuracy of results.

What aspect of your work are you most excited about at the moment?

When this research project started, it was about SN2 reactions at the phosphorus atom but along the research journey, we stumbled on the SN2 at the chlorine atom, which offers a new world of possibilities to investigate. The possibilities are what we are most excited about.

What is the next step? What work is planned?

Our next projects will involve changing key factors in the SN2 reaction mechanism involving the chlorine atom and determining the effect. We are considering changing the nucleophiles which we investigated, modifying the solvent system, and changing neighbouring groups. We are also considering investigating SN2 reactions at other reactive atoms, such as bromine and iodine.

 

Theoretical study of a derivative of chlorophosphine with aliphatic and aromatic Grignard reagents: SN2@P or the novel SN2@Cl followed by SN2@C?

Nandini Savoo,a   Lydia Rhyman*ab  and  Ponnadurai Ramasami*ab

 

 

 

 

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