Archive for the ‘Organic’ Category

First synthesis of potential sleeping sickness drug lead

Researchers from the University of Oxford have completed the first synthesis of (±)-hydroxyanthecotulide, an antiparasitic molecule that displays a number of other interesting biological activities.

David Hodgson’s group used their previously developed Cr(II)-catalysed allylation reaction to construct the molecule’s carbon skeleton. Alcohol 1 was constructed in a single step and then oxidised to aldehyde 2, which was used crude in an allylation reaction with 3 to give the anti-product (5) in good yields and high levels of diastereoselectivity.

 

The desired enone functionality was revealed by a Meyer-Schuster rearrangement of 5, which proceeded in excellent yield with in situ desilylation occurring under the reaction conditions.

1H and 13C NMR spectra of 6a were then compared with spectra of an authentic sample of (±)-hydroxyanthecotulide. Discrepancies in this spectral data encouraged the researchers to synthesise syn6b, by inversion of the C-4 secondary alcohol.

Gratifyingly, the spectra of syn-(±)-hydroxyanthecotulide (6b) was found to match data for the authentic sample and HPLC analysis provided further evidence to confirm that natural (±)-hydroxyanthecotulide, possesses syn-stereochemistry.

This research enabled the synthesis of both anti– and syn-(±)-hydroxyanthecotulide in 5 and 7 steps respectively, and may provide an attractive synthetic route for access to analogues of this biologically relevant family of molecules.

Download the full communication to find out more >

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Chiral confusion

Scientists in Israel have shown that non-biological chiral crystals are much more abundant than previously thought and their findings could clear up a possible confusion over the term ‘chiral’.

‘Chiral’ describes an object whose mirror image cannot be superimposed, for example human hands are chiral. Chirality is important to understand and recognise, as the production of a chiral molecule can lead to both mirror images – or enantiomers – being produced, and these often have very different chemical properties. Chiral crystals selective for one enantiomer that could be used for separation or as catalysts are therefore highly sought.

Read the full article in Chemistry World

Link to journal article
On the abundance of chiral crystals
Chaim Dryzun and David Avnir
Chem. Commun., 2012, Advance Article, DOI: 10.1039/C2CC17727G


Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Novel synthesis of iron catalyst complexes via C-H activation of imidazolium salts

Researchers from Lisbon have developed a mild and efficient catalytic system for reducing sulfoxides. They made the iron-N-heterocyclic carbene (NHC) catalysts (2) via C–H activation of an imidazolium pro-ligand (1) with commercially available Fe3(CO)12. This advance precludes the requirement for the strong bases traditionally employed in the synthesis of similar complexes. Additionally, iron is an economically attractive metal for use in catalysis owing to its abundance and is also non-toxic and therefore more environmentally friendly than other transition metals.

The combination of iron(ll) complex (2) with a silver salt and a silane reducing agent led to the conversion of a range of sulfoxides into the corresponding sulfides in good to excellent yields. Initial mechanistic probes suggest the existence of a free-radical based reaction pathway, although further studies are ongoing.

In this publication, Beatriz Royo’s group have demonstrated an interesting advance for the synthesis of iron-NHC complexes, which may find further utility in other catalytic processes.

Download the communication >

Posted on behalf of Alice Williamson, ChemComm web writer.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Magneto-chiral dichroism observed in light-harvesting antenna

Artificial light-harvesting antennas absorb light travelling parallel to a magnetic field differently from light travelling anti-parallel to the field, according to Japanese researchers. 

Magneto-chiral dichroism in artificial light-harvesting antenna

This effect – known as magneto-chiral dichroism (MChD) – is proposed to have played a role in the origin of homochirality in life and is important for the development of new magneto-optical devices.

This is only the second example of MChD reported in organic compounds. It indicates that MChD may occur during the light-harvesting process, says the team, which is important not only for learning more about photosynthesis but also for clarifying the origin of asymmetry in biological systems.

Read the communication:
Magneto-chiral dichroism of artificial light-harvesting antenna
Yuichi Kitagawa, Tomohiro Miyatake and Kazuyuki Ishii
Chem. Commun., 2012, DOI: 10.1039/C2CC30996C

Also of interest:
Nanoscale spectroscopy with optical antennas
Palash Bharadwaj, Ryan Beams and Lukas Novotny, Chem. Sci., 2011, 2, 136-140

Artificial Photosynthesis – a ChemComm web theme

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

First total synthesis of mucosin

Southampton chemists, lead by Richard Whitby, have completed the first total synthesis of the marine metabolite mucosin. As the synthesis is enantioselective (they made the (+) enantiomer), the team were able to determine the absolute stereochemistry of the natural compound (the (-) enantiomer), which was isolated from a sponge in the Mediterranean in 1997.

Of particular note in the synthesis is the use of a zirconium-induced co-cyclisation to install the stereochemistry of the four contiguous stereocentres around the unusual bicyclo(4.3.0)nonene core.

Read more about the work in their communication, which is free to download for a limited period.

If you’re interested in natural products, check out Natural Product Reports, which just published its regular and popular Marine Natural Products review article.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

The first direct metalation of indazoles

Paul Knochel from the Ludwig Maximilians University in Munich has developed a method to directly metalate and then functionalise N-protected indazoles.

Indazole heterocycles are important molecules in medicinal chemistry and methods to functionalise them are widely sought after. Direct metalation of indazoles at their 3 position is often problematic as this can quite easily lead to ring opening and formation of an aminonitrile product. Knochel overcame this problem by using a zinc reagent to form a bis-indazoylzinc compound.

The bis-indazoylzinc compound reacts with a wide range of electrophiles and can also undergo arylation in a Negishi cross-coupling reaction.  In general, such reactions are not possible using normal metalation reagents. Future work will concentrate on the synthesis of biologically active molecules using this methodology.

If you want to find out more then download the ChemComm article, free for a limited period.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Selective condensations of saccharides

Researchers from Leiden University have developed a new method for the synthesis of βD-rhamnosides (5).

Gijsbert van der Marel’s group showed that C-6 thiophenyl ethers act as stereodirecting groups for condensation reactions of mannosyl donors (1), leading to 1,2-cis products.

They think the reaction proceeds via formation of a bicyclic sulfonium ion (2) that acts as a ‘reservoir’ for a reactive oxocarbenium species (3). Following reaction with an intermolecular nucleophile to form 4, desulfurisation provides the corresponding 1,2-cisD-rhamnoside (5).

The researchers demonstrated the method’s utility for assembling complex oligosaccharides by making tetrasaccharide 6. This tetrasaccharide forms part of the structure of Xanthomonas campestris pathovar campestris, the causative agent of a devastating disease affecting cruciferous crops such as cabbage and broccoli.

To find out more, download the group’s ChemComm communication.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Monooxygenase blends

When deciding which material to use for a particular application, it’s often necessary to weigh up the pros and cons of each candidate. Wouldn’t it be great if you could combine the best bits from each one to produce the ideal material?

This is exactly what Marco Fraaije and his team from the University of Groningen did to create a new monooxygenase enzyme capable of performing Baeyer–Villiger oxidations with ultimate catalytic properties. For biocatalytic applications, enzymes need to be robust and should ideally be able to catalyse a broad range of substrates. Unfortunately, the only monooxygenase shown to be thermally stable (phenylacetone monooxygenase, PAMO) has narrow substrate specificity. On the other hand, there is cyclohexanone monooxygenase, CHMO, which can oxidise hundreds of substrates yet cannot be used at elevated temperatures.

The monooxygenase. Original PAMO structure is shown in green; the replaced sub-domain is shown in blue.

By replacing the substrate-binding domain of PAMO with that of CHMO or steroid monooxygenase (STMO), Fraaije was able to engineer an enzyme that was thermally robust and able to accept a wide range of substrates. Not only were the team able to combine the best of both worlds but in some cases, supersede them as they found when evaluating the conversions and enantiomeric excesses. It seems that the enzyme blend is not necessarily an average of the parent enzymes but can exhibit new properties.

Read the ChemComm article to find out more on how the team were able to improve the properties of Baeyer–Villiger monooxygenases.

Also of interest… ChemComm‘s Enzymes and Proteins web theme issue guest edited by Professors Nicholas Turner, Wilfred van der Donk and Herbert Waldmann.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

A radical approach towards the stephacidin alkaloids

Researchers from the University of Birmingham have developed a radical cascade process for rapid access to intermediates, which are important for the synthesis of alkaloids related to the stephacidin family.

Stephacidin A (1), along with other structurally related compounds, has been shown to possess activity against a number of tumour cell lines.

The group of Nigel Simpkins have demonstrated an elegant approach to the synthesis of the indoline core 3, present in a number of naturally occurring alkaloids.

Commencing from 4 ­­(available in five steps from tryptophan), a one-pot prenylation and sulfenylation sequence afforded cyclisation precursor 5 in good yield. Treatment of sulfenyl diketopiperazine 5 with Bu­3SnH and ACCN facilitated a double radical cyclisation to provide 6a and 6b. Pleasingly, isomers possessing the correct C6 stereochemistry represented the major products (4.6–3:1 depending on R group), and desired product 1 could be obtained following deprotection of 6a and 6b and subsequent purification.

This work represents an efficient entry into the stephacidin alkaloids and a potentially powerful method for the synthesis of other medicinally relevant analogues.

To read more on Simpkin’s indoline synthesis, download the ChemComm article.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)

Super-fast crystals

Identification of all solid forms of a pharmaceutical is important for drug delivery, due to the potential variability in the physical and chemical properties between amorphous and crystalline forms. The amorphous form of a compound is typically more soluble, but less stable than its crystalline counterpart. Not only that but different polymorphs of the crystalline compound can also have significantly different properties.  To accurately characterise drug action, these polymorphs need to be identified.

Using small-scale crystallisation and in-situ Raman spectroscopic analysis of the antihypertensive drug, nifedipine, Franziska Emmerling and colleagues discovered an extraordinarily fast transition from the glassy amorphous state to the metastable β polymorph in less than a minute. The β polymorph is stable for less than ten minutes before transforming again, to the thermodynamically stable α polymorph.

The speed at which the transformations take place implies that classical diffusion is not responsible for the different polymorphs but could instead be the result of small intramolecular changes arising from a pre-ordered physical arrangement of the molecules.

In an industrial world where screening for solid drug forms is always leaning towards scale-reduction and time-reduction, three physical forms on a glass slide in less than twenty minutes is pretty impressive!

To find out more, download the ChemComm article.

Also of interest…  Read Andrew Bond, U. Ramamurty, and Gautam Desiraju’s Chemical Science article on “Interaction anisotropy and shear instability of aspirin polymorphs established by  nanoidentation“.

Posted on behalf of Scott McKellar, web science writer for ChemComm.

Digg This
Reddit This
Stumble Now!
Share on Facebook
Bookmark this on Delicious
Share on LinkedIn
Bookmark this on Technorati
Post on Twitter
Google Buzz (aka. Google Reader)