Archive for February, 2018

Gold Rocks the Casbah

Researchers at the University of Texas have developed an inventive method to deliver molecules into the cell’s nucleus. Advances in gene therapy and the development of drugs that target DNA, the transcription machinery and other regulatory systems all rely on effective transport of molecules into the nucleus. Furthermore, achieving selective delivery of drugs reduces toxicity to non-target organs while maintaining the therapeutic effect.

Towards this aim, the authors delivered liposomes coated with clusters of gold nanoparticles into the cytoplasm. Laser irradiation of the cells heats the nanoparticles to high temperatures resulting in vapourisation of the water-based cytosol, and the transient formation of nanobubbles. The effect of this is an increase in the porosity of the nuclear envelope, enabling the transfer of various macromolecules from the cytoplasm into the nucleus. The authors describe this technique as ‘nanomechanical transduction’ because it is hypothesised that the mechanical effects brought on by the rapid growth and collapse (20 – 50 ns lifetimes) of the bubbles is responsible for the observed increase in porosity.

Local heating of gold nanoparticles and the subsequent formation of nanobubbles occurs due to ‘plasmon resonance’, whereby an electromagnetic field interacts with gold on the surface of the liposome and drives free-electron oscillation in resonance with the incident laser.

A diagram showing nanomechanical transduction. A gold-coated nanoparticle liposome enters the cell and, upon activation by a laser pulse, creates nanobubbles which causes mechanical disruptions in the cell and increased permeability of the nuclear membrane so molecules such as plasmids can enter.

A diagram showing nanomechanical transduction. A gold-coated liposome enters the cell and, upon activation by a laser pulse, creates nanobubbles and mechanical disruption within the cell, resulting in increased permeability of the nuclear membrane.

As a proof-of-concept the authors investigated whether nanomechanical transduction can improve the nuclear localisation of two different types of macromolecule: a dextran polymer labelled with a fluorescent dye, and a plasmid encoding the green fluorescent protein. In the first experiment, cells containing the dextran polymer were incubated with plasmonic liposomes and subjected to a near-infrared laser pulse. Up to 70% fluorescence intensity was observed in the nucleus compared to the cytoplasm, far exceeding the result from control experiments using electroporation to increase cell membrane permeability. In a similar way, nanomechanical transduction resulted in a 2.7 fold increase in the expression of the green-fluorescent protein compared to using electroporation, demonstrating efficient delivery of the plasmid into the nucleus.

The authors entitle their paper ‘rock the nucleus’ and, unintentional reference or not, I think a Casbah (one meaning is the central keep, or citadel, of a walled city) is a rather fitting analogy for the nucleus: the command post of the cell, and safeguard of genetic information. The authors of this work offer a sophisticated yet general method for molecules to breach the walls.

To find out more please read:

Rock the nucleus: significantly enhanced nuclear membrane permeability and gene transfection by plasmonic nanobubble induced nanomechanical transduction

Xiuying Li, Peiyuan Kang, Zhuo Chen, Sneha Lal, Li Zhang, Jeremiah J. Gassensmith and Zhenpeng Qin.
Chem. Commun., 2008, Advance Article
DOI: 10.1039/c7cc09613e

About the author:

Zoë Hearne is a PhD candidate in chemistry at McGill University in Montréal, Canada, under the supervision of Professor Chao-Jun Li. She hails from Canberra, Australia, where she completed her undergraduate degree. Her current research focuses on transition metal catalysis to effect novel transformations, and out of the lab she is an enthusiastic chemistry tutor and science communicator.

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Anchoring Arynes on Graphene with Microwave but No Solvents

Recently in ChemComm, an international team from Italy and Spain reported a non-conventional way to anchor arynes onto graphene surface using microwave. Their developed method is fast, efficient, mild and solvent-free.

Attaching functional groups onto graphene surface, i.e. functionalization, allows the physical and chemical properties of graphene to be fine-tuned, such as electrical conductivity and solubility. Conventional solvent-based functionalization strategies usually involve time-consuming reactions and tedious purification steps. The poor suspension stability of graphene in solvents, particularly in polar organic solvents, greatly hinders the overall functionalization efficiency. Therefore, establishing easy and solvent-free functionalization protocols for graphene is highly needed.

M. Prato, A. Criado and coworkers made a breakthrough in addressing this challenge by developing a microwave-assisted functionalization method. Their method to functionalize graphene consists of cycloaddition reactions between few-layer graphene (FLG) and arynes (Figure 1). These reactions proceed by mixing the dry powder of FLG and arylene anhydrides, the precursors of arynes, followed by rapid heating under microwave irradiation. The whole process is solvent-free and occurs within half a minute. It is also applicable to a variety of arynes (Figure 2).

Figure 1. The schematic illustration of the microwave-assisted functionalization of graphene with arynes. This process can be carried out within half a minute and is solvent-free.

Figure 2. A variety of arynes capable of being anchored on graphene surface. 1~6 represent the arylene anhydrides and f-G(7)~f-G(12) are corresponding arynes attached onto graphene.

The most unique feature of the demonstrated method is the dual role of FLG. In addition to being one of the reactants, FLG is capable of absorbing microwave energy, and enables its surface to rapidly reach high temperatures that significantly accelerate the cycloaddition reactions.

This microwave-assisted functionalization method shows great promise as a stepping stone for the fast and efficient modulation of graphene surface and subsequently, the performance of graphene-based electronics.

 

To find out more please read:

Microwave-Induced Covalent Functionalization of Few-Layer Graphene with Arynes Under Solvent-Free Conditions

V. Sulleiro, S. Quiroga, D. Peña, D. Pérez, E. Guitián, A. Criado and M. Prato

Chem. Commun. 2018, DOI: 10.1039/C7CC08676H

About the blogger:

Tianyu Liu obtained his Ph.D. (2017) in Physical Chemistry from University of California, Santa Cruz in United States. He is passionate about scientific communication to introduce cutting-edge research to both the general public and scientists with diverse research expertise. He is an online blog writer for Chem. Commun. and Chem. Sci. More information about him can be found at http://liutianyuresearch.weebly.com/.

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Nucleus infiltrated by peptide gene switch

Researchers in India have taken a step towards selective gene regulation by making a peptide-based artificial transcription factor that can upregulate a luciferase reporter gene in mammalian cells.1

Source: © Royal Society of Chemistry
Top: Schematic representation of the artificial transcription factor. DBD = DNA binding domain, NLS = nuclear localisation signal, AD = activationdomain, CPP = cell penetrating peptide. Bottom: The main DNA recognition motif is a pair of symmetry related helices inserted into the major groove of the target DNA.

Transcription factors are proteins that bind to specific DNA sequences and control gene expression by converting DNA to RNA. Since transcription factors are important for turning genes on or off, the researchers hope that artificial transcription factors could treat diseases by rebalancing perturbations in cellular pathways. Lead researcher, Siddhartha Roy, from the Bose Institute in Kolkata, says their work ‘is part of a continuing effort to develop small peptides that are deliverable inside the cell and can regulate – either inhibit or activate – the expression of specific genes.’

Read the full story by Fiona Tscherny on Chemistry World.

References

1 K Roy et al, Chem. Commun., 2018, DOI: 10.1039/c7cc09279b

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HOT ChemComm articles for January

All of the referee-recommended articles below are free to access until 5th March 2018.

Kinetic Stabilisation of a Molecular Strontium Hydride Complex using an Extremely Bulky Amidinate Ligand
Caspar N. de Bruin-Dickason, Thomas Sutcliffe, Carlos Alvarez Lamsfus, Glen B. Deacon, Laurent Maron and Cameron Jones
Chem. Commun., 2018,54, 786-789
DOI: 10.1039/C7CC09362D, Communication

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The antibacterial activity of polyoxometalates: Structures, antibiotic effects and future perspectives
Aleksandar Bijelic, Manuel Aureliano and Annette Rompel
Chem. Commun., 2018,54, 1153-1169
DOI: 10.1039/C7CC07549A, Feature Article

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Controlled Preparation of Amphiphilic Triblock-Copolyether in a Metal- and Solvent-Free Approach for Tailored Structure-Directing Agents
Alexander Balint, Marius Papendick, Manuel Clauss, Carsten Müller, Frank Giesselmann and Stefan Naumann
Chem. Commun., 2018, Advance Article
DOI: 10.1039/C7CC09031E, Communication

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Alkene functionalization for the stereospecific synthesis of substituted aziridines by visible-light photoredox catalysis
Wan-Lei Yu, Jian-Qiang Chen, Yun-Long Wei, Zhu-Yin Wang and Peng-Fei Xu
Chem. Commun., 2018, Advance Article
DOI: 10.1039/C7CC09151F, Communication

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Microwave-induced covalent functionalization of few-layer graphene with arynes under solvent-free conditions
M. V. Sulleiro, S. Quiroga, D. Peña, D. Pérez, E. Guitián, A. Criado and M. Prato
Chem. Commun., 2018, Advance Article
DOI: 10.1039/C7CC08676H, Communication

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Barbiturate end-capped non-fullerene acceptors for organic solar cells: tuning acceptor energetics to suppress geminate recombination losses
Ching-Hong Tan, Jeffrey Gorman, Andrew Wadsworth, Sarah Holliday, Selvam Subramaniyan, Samson A. Jenekhe, Derya Baran, Iain McCulloch and James R. Durrant
Chem. Commun., 2018, Advance Article
DOI: 10.1039/C7CC09123K, Communication

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Photoredox sugar synthesis plausible on early Earth

Scientists in the US have carried out experiments confirming that ultraviolet light could have driven the synthesis of simple prebiotically important sugars under conditions found on early Earth.1


Source: © Royal Society of Chemistry
UV light photooxidises cyanocuprates, producing aqueous electrons, which are key for putting into motion a reaction network capable of producing glycolaldehyde and glyceraldehyde

Back in 2012, Dougal Ritson and John Sutherland,2 at the Medical Research Council Laboratory of Molecular Biology in Cambridge, UK, synthesised sugars from cyanocuprates using ultraviolet light – findings that supported the RNA world hypothesis for the origin of life. Now Zoe Todd and Dimitar Sasselov from the Harvard-Smithsonian Centre for Astrophysics, and their colleagues have performed similar experiments, but at lower, and more representative, wavelengths than those previously considered.

Read the full story by Lynn Murphy on Chemistry World.

References

1 Zoe Todd et al, Chem. Commun., 2018, DOI: 10.1039/c7cc07748c (This article is open access.)

2 D Ritson and J Sutherland, Nat. Chem., 2012, 4, 895 (DOI: 10.1038/nchem.1467)

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Hiding Carbon Dioxide in Oxazolidinones

Sometimes it feels as though the pinnacle of synthetic achievement is represented by 20 step total syntheses (with 10 contiguous stereocentres and 5 fused rings…). The level of chemical complexity that can be fashioned from simple building blocks is undoubtedly impressive, but amid such feats it is important not to lose sight of the elegance and worth of simple chemistry, especially when it aims to play a part in resolving profound challenges. One such challenge, which will increasingly confront future generations, is how to reduce the load of carbon dioxide in the atmosphere. One solution is to ‘fix’ carbon dioxide by integrating it into chemical building blocks of added complexity in a sustainable way.

The porosity and high surface area of metal organic frameworks (MOFs), a class of three-dimensional coordination networks, proffers them as ideal materials for capture and storage of carbon dioxide. A team of researchers have designed a MOF which consumes carbon dioxide in a different way: by transformation into value-added chemicals. The group have developed a catalytic MOF embedded with lewis-acidic copper centres capable of converting aziridines to oxazolidinones by the addition of carbon dioxide. Oxazolidinones are used as auxiliaries in chiral synthesis, and are structural components of some antibiotics.

The MOF, termed MMPF-10, is a metal-metalloporphyrin framework constructed from a copper-bound porphyrin ring chemically modified to incorporate 8 benzoic acid moieties, generating an octatopic ligand. These carboxylic acids groups form a second complex with copper in situ, termed a ‘paddlewheel’ for its appearance, with the formula [Cu2(CO2)4]. The resulting network contains hexagonal channels measuring 25.6 x 15.6 Å flanked by four of each of the two copper complexes. With 0.625 % of the catalyst at room temperature, 1 bar CO2 pressure, and in a solvent free environment, MMPF-10 catalyses the transformation of 1-methyl-2-phenylaziridine to yield 63% of the product.

metal-metalloporphyrin MOF catalyses catalyzes carbon dioxide fixation aziridines to oxazolidinones

Topology of MMPF-10 showing hexagonal channels in a) and c), and pentagonal cavities in b). Turquoise: copper, red: oxygen, grey: carbon, blue: nitrogen.

This work, a simple reaction to prepare oxazolidinones, shows that carbon dioxide can be fixed in specialised synthetic building blocks in a sustainable way. This is the way the first paragraph ended, ‘in a sustainable way’, because the challenge of developing such a reaction is two-fold: it must use carbon dioxide, and the reaction conditions must be sustainable. There will be no beneficial offset if the reaction uses a lot of energy, requires many resources, or generates larges quantities of waste. In this reaction the researchers have remained mindful of developing a mild, solvent-free reaction with low catalyst loading employing an earth abundant metal, reflecting an earnest aim to develop practical and sustainable chemistry.

To find out more please read:

A metal-metalloporphyrin framework based on an octatopic porphyrin ligand for chemical fixation of CO2 with aziridines

Xun Wang, Wen-Yang Gao, Zheng Niu, Lukasz Wojtas, Jason A. Perman, Yu-Sheng Chen, Zhong Li, Briana Aguila and Shengqian Ma
Chem. Commun., 2018, Advance Article
DOI: 10.1039/c7cc08844b

About the Author

Zoë Hearne is a PhD candidate in chemistry at McGill University in Montréal, Canada, under the supervision of Professor Chao-Jun Li. She hails from Canberra, Australia, where she completed her undergraduate degree. Her current research focuses on transition metal catalysis to effect novel transformations, and out of the lab she is an enthusiastic chemistry tutor and science communicator.

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