Machine-learning accelerates catalytic trend spotting

Written by Anna Meehan

Researchers in Japan have used a machine-learning method to cut the time it takes to predict the catalytic potential of different metals.

Binding between a metal surface and an adsorbate mainly depends on the electronic structure of the metal. More energy at centre of the metal’s d-band creates a stronger bond between its surface and the adsorbate. Based on this theory, scientists have long regarded a value called the d-band centre as a key indicator of a metal’s catalytic activity.

Machine learning helps researchers tackle challenging tasks, such as designing pollution filter catalysts at industrial scale © iStock

Researchers normally compute this value independently for each metal using first-principles calculations. Now, as part of a wider interest in machine-learning applications, Ichigaku Takigawa and his group at Hokkaido University have developed a new method for predicting the d-band centre value. They use readily available data, such as density and electronegativity from other metals or bimetals, to predict the d-band centre for 11 metals and their bimetallic alloys. The results compare favourably with values obtained through density functional theory.

To read the full article please visit Chemistry World.

Machine-learning prediction of the d-band center for metals and bimetals
Ichigaku Takigawa, Ken-ichi Shimizu, Koji Tsuda and Satoru Takakusagi
RSC Adv., 2016,6, 52587-52595
DOI: 10.1039/C6RA04345C, Paper

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Now you see me: autofluorescent nanoparticles for live cell imaging and biodegradation modeling

Guest Web-writer Anand Devasthanam
Anand has keen interest for storytelling. He has received formal training in the fields of immunology and oncology. As an aspiring science communicator, Anand strives to help scientists take complex scientific data and core messages and turn them into a narrative that is compelling, creative and scientifically accurate.

There is an increasing need for novel technologies to facilitate in vivo tissue visualization and drug delivery. However, this need is largely unmet due to the challenges associated with creating biocompatible materials that meet safety standards. In addition, the potential health risks associated with the accumulation of non-degradable imaging agents and drug carries represents a major obstacle in the innovation pipeline.

The intrinsic autofluorescent, biodegradable and biocompatible properties of Bovine Serum Albumin (BSA) is well appreciated. However, BSA has short excitation and emission wavelengths, which substantially restricts any in vivo biomedical applications.  Motivated by a recent report suggesting that glutaraldehyde (GA)-crosslinking induces autofluorescence in protein-based nanoparticles by modifying a series of C=C and C=N bonds, a team led by Yu Lei at the Department of Biomedical Engineering, University of Connecticut, developed low-cost, non-toxic, BSA-based protein nanoparticles (average size ~40 nm) for live cell imaging and biodegradation analysis.

The nanoparticles were generated by adding drops of a prepared BSA solution to glutaraldehyde/n-butanol solution at high-speed, and the resulting product heated at 121°C to ensure sterility. Interestingly, a similar reaction carried out in the absence of the GA crosslinker did not produce autofluorescent BSA nanoparticles, suggesting that GA was indeed playing an important role in chemically transforming BSA. Using UV-visible spectroscopy, the investigators observed that BSA nanoparticles exhibited strong autofluorescence at both green (530 nm) and red (630 nm) wavelengths.

The BSA nanoparticles were not uniform in structure, owing to the random points of crosslinking within BSA, and also due to the ensuing condensation reaction that occurs during the sterilization step. Therefore, a clear mechanistic explanation for the strong autofluorescence warrants further investigation. However, the investigators speculate that GA-crosslinking and heating could result in new C=N bonds, which could synergize with the C=C bonds from tryptophan, tyrosine, phenylalanine and histidine residues with BSA, leading to enhanced green and red fluorescence.

The team went on to demonstrate the utility of the BSA nanoparticles in biomedical applications such as imaging and biodegradation. They used fluorescent microscopy techniques to visualize the entry of BSA nanoparticles into human kidney cells grown in vitro. The study also found that the BSA nanoparticles were completely degraded within 18 days of injection in mice. A mathematical model for the distribution and biodegradation of the nanoparticles was in good agreement with the experimental results. Finally, to add an additional line of evidence supporting the biocompatible nature of the BSA nanoparticles, the investigators looked for signs of tissue damage in the region surrounding the site of injection, together with an analysis of internal organs including the pancreas, liver and kidney, and report that the BSA nanoparticles are biocompatible.

Read the full article here:

Xiaoyu Ma, Derek Hargrove, Qiuchen Dong, Donghui Song, Jun Chen, Shiyao Wang, Xiuling Lu, Yong Ku Cho, Tai-Hsi Fan and  Yu Lei
DOI: 10.1039/c6ra06783b
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RSC Supramolecular Chemistry Award for Editor-in-Chief Mike Ward

Each year the Royal Society of Chemistry presents prizes and awards to chemical scientists who have made a considerable contribution in their area of research, in industry and academia. This year, we are delighted to announce that RSC Advances Editor-in-Chief, Professor Mike Ward of the University of Sheffield, UK, has been awarded the 2016 RSC Supramolecular Chemistry Award, for his leading contributions to the synthesis, characterisation, host-guest chemistry and functional properties of self-assembled coordination cages.

The Supramolecular Chemistry Award is awarded biennially and recognises studies leading to the design of functionally useful supramolecular species.

In celebration of the 2016 RSC Prizes and Awards, we have collected together some of the research recently published by the winners. This collection showcases articles authored by the winners from across the Royal Society of Chemistry’s journals portfolio, which are free to access for a limited period. A full list of 2016 winners and more information about RSC Prizes and Awards can be found here.

Please join us in congratulating Mike on this achievement!

We would like to highlight the RSC Advances themed collection, Supramolecular chemistry: self-assembly and molecular recognition, Guest Edited by Mike Ward.

The articles in this issue cover many aspects of the formation of, and molecular recognition with, non-covalent self-assembled systems. Systems studied span the range of supramolecular assemblies from MOFs to gels, and potential applications or functional behaviour that are on display here include host/guest chemistry, spin crossover, molecular sensors, and extraction/separation. This collection of articles powerfully illustrates the diversity and increasing importance of supramolecular chemistry.

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The heat is on: cancer-drug loaded nanoparticles for photothermal therapy

Guest Web-writer Anand Devasthanam
Anand has keen interest for storytelling. He has received formal training in the fields of immunology and oncology. As an aspiring science communicator, Anand strives to help scientists take complex scientific data and core messages and turn them into a narrative that is compelling, creative and scientifically accurate.

Photothermal therapy is an emerging area of cancer treatment. Here, a photothermal agents, often nanoparticles (NPs) with a resonance peak in the 700-1200nm range, are delivered to the tumor site and are subsequently activated by light in the Near Infrared (NIR) range. As a consequence, tumor cells are thermally ablated.

In a study led by Xiaolin Li and colleagues at the Key Laboratory for Thin Film and Microfabrication and Changzheng Hospital in China, scientists used SiO2@Au core-shell NPs chemically conjugated via PEGylation to graphene oxide (GO) in conjunction with a chemotherapeutic agent to target prostate cancer cells in vitro. Using the chemotherapeutic agent Docetaxel (Dtxl),  which is among the leading front line treatments for patients diagnosed with prostate cancer, the team demonstrated that Dtxl-loaded SiO2@Au@GO NPs, when activated with light in the NIR range, significantly curbed the survival of DU145 prostate cancer cells.

While SiO2@Au core-shell NPs have been used previously by other research groups to study their ability to remove tumors, Li’s team fabricated SiO2@Au@GO NPs to take advantage of their relatively low cost, large specific surface area, and efficient loading and delivery of water-soluble aromatic drug molecules. This one-two punch strategy was realized via a double shell, multifunctional approach: the inner core SiO2@Au NPs served as a photothermal inducer to bring about cellular cytotoxicity; the outer GO NPs carried the antitumor drug, Dtxl. The study found that exposing DU145 cells to the NPs alone for 24h did not result in overt cell death, suggesting that the NPs have a good safety profile. Importantly, the study showed that when NP-treated cell cultures were irradiated with a 780nm NIR laser, there was a significant decline in viable cells over a 24h period.

The study demonstrates that Dtxl-loaded SiO2@Au@GO NPs could be manufactured and potentially used an an antitumor agent for the treatment of prostate cancer. Moreover, these findings illuminate the untapped potential of NP-based photothermal agents as adjuvant agents in oncology clinical trials in the near future.

Read the full article here:

Xiaolin Li,   Zhi Yang,   Nantao Hu,   Liying Zhang,   Yafei Zhang and   Lei Yin
DOI: 10.1039/C6RA03886G
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Top 10 most-downloaded articles: Q1 Jan–Mar 2016

Take a look at the most-downloaded RSC Advances articles from the months of October, November and December 2015 and let us know what you think!

Size-controlled silver nanoparticles synthesized over the range 5–100 nm using the same protocol and their antibacterial efficacy
Shekhar Agnihotri, Soumyo Mukherji and Suparna Mukherji
RSC Adv., 2014,4, 3974-3983
DOI: 10.1039/C3RA44507K

Free radicals, natural antioxidants, and their reaction mechanisms
Satish Balasaheb Nimse and Dilipkumar Pal
RSC Adv., 2015,5, 27986-28006
DOI: 10.1039/C4RA13315C

Thermal-runaway experiments on consumer Li-ion batteries with metal-oxide and olivin-type cathodes
Andrey W. Golubkov, David Fuchs, Julian Wagner, Helmar Wiltsche, Christoph Stangl, Gisela Fauler, Gernot Voitic, Alexander Thaler and Viktor Hacker
RSC Adv., 2014,4, 3633-3642
DOI: 10.1039/C3RA45748F

Synthesis and properties of molybdenum disulphide: from bulk to atomic layers
Intek Song, Chibeom Park and Hee Cheul Choi
RSC Adv., 2015,5, 7495-7514
DOI: 10.1039/C4RA11852A

Orientation dependence of the pseudo-Hall effect in p-type 3C–SiC four-terminal devices under mechanical stress
Hoang-Phuong Phan, Afzaal Qamar, Dzung Viet Dao, Toan Dinh, Li Wang, Jisheng Han, Philip Tanner, Sima Dimitrijev and Nam-Trung Nguyen
RSC Adv., 2015,5, 56377-56381
DOI: 10.1039/C5RA10144A

Formation of organic–inorganic mixed halide perovskite films by thermal evaporation of PbCl<inf>2</inf> and CH<inf>3</inf>NH<inf>3</inf>I compounds
Cheng Gao, Jiang Liu, Cheng Liao, Qinyan Ye, Yongzheng Zhang, Xulin He, Xiaowei Guo, Jun Mei and Woonming Lau
RSC Adv., 2015,5, 26175-26180
DOI: 10.1039/C4RA17316C

Dual protection of amino functions involving Boc
Ulf Ragnarsson and Leif Grehn
RSC Adv., 2013,3, 18691-18697
DOI: 10.1039/C3RA42956C

Third-generation solar cells: a review and comparison of polymer:fullerene, hybrid polymer and perovskite solar cells
Junfeng Yan and Brian R. Saunders
RSC Adv., 2014,4, 43286-43314
DOI: 10.1039/C4RA07064J

Graphene and its nanocomposite material based electrochemical sensor platform for dopamine
Alagarsamy Pandikumar, Gregory Thien Soon How, Teo Peik See, Fatin Saiha Omar, Subramaniam Jayabal, Khosro Zangeneh Kamali, Norazriena Yusoff, Asilah Jamil, Ramasamy Ramaraj, Swamidoss Abraham John, Hong Ngee Lim and Nay Ming Huang
RSC Adv., 2014,4, 63296-63323
DOI: 10.1039/C4RA13777A

Colloidal semiconductor nanocrystals: controlled synthesis and surface chemistry in organic media
Jin Chang and Eric R. Waclawik
RSC Adv., 2014,4, 23505-23527
DOI: 10.1039/C4RA02684E


Interesting in submitting to RSC Advances? You can submit online today, or email us with your ideas and suggestions.


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Supramolecular cages for chemical weapons

The research of RSC Advances Chief Editor Mike Ward focussing on the development of supramolecular cages that trap chemical weapon stimulants, has been highlighted in Chemistry World.

Mike and his team at Sheffield University have developed new supramolecular cages that exploit the hydrophic effect and bind alkyl phosphonates inside. These phosphonates are very similar to organophosphorous chemical weapons. Cobalt or cadmium dications form the cage vertices and bis(pyrazolyl-pyridine) ligands run along each edge, forming a hydrophobic centre lined with CH groups. So, in water, the phosphonate hydrophobic alkyl tails are attracted to the inside of the cage. Whats more, the cage is luminescent and this luminescence reduces when alkyl phosphonate enters, meaning that the cages can also be used to signal the presence of chemical weapons.

The supramolecular structure

To find out more, read the full Chemistry World article based on this paper:

Binding of chemical warfare agent simulants as guests in a coordination cage: contributions to binding and a fluorescence-based response
Christopher G. P. Taylor, Jerico R. Piper and Michael D. Ward
Chem. Commun., 2016
DOI: 10.1039/C6CC02021F

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Modelling lung cancer: tumor cells on collagen scaffolds

Guest Web-writer Anand Devasthanam
Anand has keen interest for storytelling. He has received formal training in the fields of immunology and oncology. As an aspiring science communicator, Anand strives to help scientists take complex scientific data and core messages and turn them into a narrative that is compelling, creative and scientifically accurate.

Non-small-cell lung cancer (NSCLC) is among the leading causes of cancer-related deaths globally. Our understanding of the way tumors grow, spread and respond to therapy is driven largely by studies conducted on tumor cells growing as monolayers in plastic cell culture flasks in laboratories across the world. The ability to develop novel and more effective cancer-fighting drugs is dependent, in part, on developing cell culture systems that allow scientists to better observe how tumor cells grow in a three dimensional, physiologically relevant environment.

SEM images of the collagen meshwork and A549 cell aggregates (noted by the arrow head) formed during the
3D cultivation in vitro.

The tumor microenvironment (TM) is the area that immediately surrounds a tumor and includes non-cancer cells together with secreted proteins called the extracellular matrix (ECM), which supports tumor growth. Monolayer cell cultures, although utilized widely, cannot accurately mimic the TM. For instance, cell-cell and cell-ECM interactions that influence tumor growth cannot be observed in great detail with conventional monolayer cultures. Inspired by the up-and-coming field of tumor engineering, which aims to construct culture models that recapitulate aspects of the TM, a team of researchers led by Dr. Dan-Dan Wang at the Chinese Academy of Sciences developed a 3D culture system wherein A549 cells (immortal lung cancer cells of human origin) grow on a collagen hydrogel scaffold.

To demonstrate the utility of the 3D culture system, the study measured cell viability and showed that cells in the collagen hydrogel scaffold were alive for extended periods (>12 days) in vitro. The study also assessed the appearance of artificial A549 tumors growing on the hydrogel to demonstrate that 3D cultures more closely recapitulate the morphology of tumors growing within human tissues.

The proliferation of A549 cells is driven by the activation of a cell surface protein called Epidermal Growth Factor Receptor (EGFR), which in turn switches on genes that sustain cell growth and cell division. The team observed that Gefitinib, a drug known to disrupt growth-promoting signals arising at EGFR, was able to significantly constrain A549 cell proliferation in 3D cultures. Interestingly, the team reports that a higher concentration of Gefitinib was required to curb cell growth in 3D cultures compared to monolayers due to the complex architecture of the artificial tumors in 3D cultures.

Collectively, this study demonstrates an improved culture model of human lung cancer. Since collagen is an important component of the ECM, the study sets the stage for future efforts to better recapitulate the TM in vitro. The collagen hydrogel scaffold system could serve as in important tool in the discovery of targeted therapies for lung cancer.

Read the full article here:

Dan-Dan Wang,   Wei Liu,   Jing-Jie Chang,   Xu Cheng,   Xiu-Zhen Zhang,   Hong Xu,   Di Feng,   Li-Jun Yu and   Xiu-Li Wang
RSC Adv., 2016, 6, 24083-24090
DOI: 10.1039/C6RA00229C
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Hitching a ride: recombinant DNA delivery into mammalian cells via nanoparticle-based vehicles

Guest Web-writer Anand Devasthanam
Anand has keen interest for storytelling. He has received formal training in the fields of immunology and oncology. As an aspiring science communicator, Anand strives to help scientists take complex scientific data and core messages and turn them into a narrative that is compelling, creative and scientifically accurate.

Transfection is the process of introducing genetic material, typically DNA, into mammalian cells. This technique has proven indispensable in understanding signaling networks that govern cellular function. To better understand the function of a given protein, molecular biologists routinely transfect cells with DNA (i.e. recombinant DNA). This enters cells in culture and subsequently encodes the specific protein under study. The recombinant DNA is combined with a transfection reagent, typically Lipofectamine, to facilitate its entry into cells.

A study conducted by Neuhaus and colleagues, at the Inorganic Chemistry and Center for Nanointegration (CeNIDE) in Germany, utilizes calcium phosphate nanoparticles (CPNPs) as vehicles to deliver recombinant DNA into cells. CPNPs have previously been shown to spontaneously bind DNA, thus supporting the notion that they could be used as transfection agents. The approach requires that CPNPs first be mixed with a buffer containing recombinant DNA before being added to cultures containing actively growing mammalian cells.

Despite its simplistic approach, the transfection process in general has a few technical limitations. First, not all cells in culture uptake the recombinant DNA. This leads to reduced transfection efficiency. Second, the transfection efficiency is strongly influenced by the cell type (i.e. distinct cell forms within a species). And third, cells interpret recombinant DNA as ‘foreign’ genetic material and trigger alarms which culminate in cell death.

Images demonstrating the uptake of green flourescent nanoparticles by different cell types

To better assess the utility of CPNPs as transfection agents, the study’s authors first transfected ten different cell types with DNA. The DNA in their study encoded a protein that fluoresces green when excited at a specific wavelength. Using Lipofectamine as a comparator reagent, the study assessed the transfection efficiency of CPNPs by measuring the proportion of cells that glowed green under a fluorescent microscope. The study also highlighted the differences in transfection efficiencies between different cell types. The authors propose that CPNPs represent promising candidates as transfection agents and therefore warrant further study.

Clinical trials utilizing nucleotide-based targeted therapies for multiple human diseases are on the rise. CPNPs may represent the new breed of nucleotide-based drug delivery agents in the years to come.

Read the full article here:

Nanoparticles as transfection reagents: a comprehensive study with ten different cell lines
Bernhard Neuhaus,  Benjamin Tosun, Olga Rotan, Annika Frede, Astrid M. Westendorf and Matthias Epple
RSC Adv., 2016,6, 18102-18112
DOI: 10.1039/C5RA25333K

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Magnetic leathers

Leather is a natural, durable and flexible material that has been prepared and used by humans for millennia. Now, scientists in India have developed magnetic leathers that can make this material evermore versatile.

Made from animal hide, leather is largely made of a chromium-collagen matrix and is paramagnetic. Despite this, it does not interact effectively with magnetic fields. Introducing ferromagnetic properties to leather could enable this material to be used in smart or intelligent garments, electromagnetic interference shielding, adhesive-free wall covering and even in energy harvesting from human motion. As such, a team lead by Dr Krishbaraj Kaliappa at the Central Leather Institute in Chennai, added iron oxide nanoparticles to leather that show significant magnetic behaviour.

The team prepared leather samples using conventional finishing techniques. During this process, they applied a coating of  iron oxide nanoparticles produced by co-precipitation, or a commercially available magnetic pigment. The presence of Fe3O2 in both samples was confirmed by X-ray diffraction analysis. When compared to the paramagnetic control leather, magnetic hysteresis revealed considerable ferromagnetic behavior in the two samples. In addition, the leathers show significant response to permanent magnets. Further tests revealed that particle incorporation leaves other physical properties of the leather, largely unchanged.

Investigations in to the applications of these magnetic leathers have already shown them to be promising adhesive-free wall tiles. The team also demonstrate that their properties may also enable application in electromagnetic energy generation from human motion.

Digital images of the control leather , that with iron oxide nanoparticles and that with the commercially available magnetic pigment added during finishing.

Read the full article:

Magnetic leathers
P. Thanikaivelan, R. Murali and K. Krishnaraj
RSC Adv., 2016,6, 6496-6503 DOI: 10.1039/C5RA21909D

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Canine tea time

Researchers in China have manufactured dog food containing tea polyphenols. They have shown that when dogs are fed tea polyphenol containg food, antioxidant and antimicrobial effects, similar to those observed in humans, are demonstrated.

Fang Zhong and colleagues also wanted to test the foods palpability to find out if the dogs would actually enjoy eating it. Following a five day trial, it emerged that dogs actually preferred eating food that contained 0.5% tea polyphenols. The dogs’ diet was then restricted to either tea polyphenol containing food or the control food. Subsequent tests revealed higher levels of antioxidant activity in the dogs on the tea polyphenol diet, along with lower levels of fecal bacteria in their stool.

To find out more, read the full Chemistry World article.

Quantitative optimization and assessments of supplemented tea polyphenols in dry dog food considering palatability, levels of serum oxidative stress biomarkers and fecal pathogenic bacteria,
Maoshen Chen, Xuemei Chen, Wenli Cheng, Yue Li, Jianguo Ma and Fang Zhong
RSC Adv., 2016,6, 16802-16807
DOI: 10.1039/C5RA22790A

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