Archive for the ‘Hot articles’ Category

Cascading to spiropyrazolones

Researchers in China have developed a simple and effective way to construct spiropyrazolones, stereochemically complex and challenging structural motifs found in many biologically active molecules.

An organocatalytic asymmetric double Michael cascade reaction of unsaturated ketones and unsaturated pyrazolones: highly efficient synthesis of spiropyrazolone derivatives
Jinyan Liang, Qiao Chen, Luping Liu, Xianxing Jiang and Rui Wang
DOI: 10.1039/C2OB27095A

An organocatalytic asymmetric double Michael cascade reaction of unsaturated ketones and unsaturated pyrazolones: highly efficient synthesis of spiropyrazolone derivativesSpirocyclic structures are bicyclic systems where the two rings are connected through a single atom, usually a quaternary carbon. Due to their complex three-dimensional architecture, they are important molecular subunits in organic chemistry. They can be very difficult to assemble, especially in an asymmetric and atom-economic fashion.

3-Pyrazolones are privileged structures and molecules that contain them have been found to possess a huge range of useful biological effects such as antibiotic and anti-tumour properties. In addition to their marked medicinal potential, they have also found use as dyes and anti-corrosives.

For these reasons, methods for the construction of pyrazolone derivatives have attracted intense interest from organic chemists in recent years. The synthesis of optically active pyrazolones, including spiropyrazolones, is particularly challenging with only a handful of syntheses reported in the current literature.

Professor Rui Wang, of the State Key Laboratory of Applied Organic Chemistry, Lanzhou University in China and his research group have been looking into new ways to make spirocyclic compounds, using organocatalytic cascade reactions.

In their latest HOT PAPER, they turn their attention to the construction of spiropyrazolones. A very elegant organocatalytic double Michael cascade reaction between unsaturated ketones and unsaturated pyrazolones yields the desired spiropyrazolone core structure in excellent diastereo- and enantioselectivities.

This reaction provides rapid entry into stereochemically complex spiropyrazolone derivatives and will no doubt prove useful in the manufacture of future medicines and materials.

Published on behalf of Annabella Newton, Organic & Biomolecular Chemistry web science writer.

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HOT: Synthesis of polysubstituted furanonaphthoquinones

In this HOT paper, Wenwei Lin and colleagues at National Taiwan Normal University report an efficient and versatile synthesis of polysubstituted furanonaphthoquinones. The strategy developed by Lin et al. is based on the synthesis of a series of novel poly-functionalized phosphorus zwitterions via three-component reactions, which are then involved in an intramolecular Wittig reaction.

The flexibility of this synthesis is such that furanonaphthoquinones with various substituents at the 2- and 3-positions of the furan segment can be produced.

To find out more about this method download the article for free today.

A versatile and practical method for regioselective synthesis of polysubstituted furanonaphthoquinones
Zong-Ze Wu, Yeong-Jiunn Jang, Chia-Jui Lee, Yen-Te Lee and Wenwei Lin
DOI: 10.1039/C2OB26986D

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Probing the biological activity of etnangien

Dirk Menche and co-workers report an efficient procedure for the concise synthesis of highly elaborate polyenes. They have showcased their novel hetero-bis-metallated alkene reagent in the construction of a small library of etnangien side-chain analogues. This has allowed them to establish important structure-activity information about this family of biologically-significant natural products.

Modular synthesis of polyene side chain analogues of the potent macrolide antibiotic etnangien by a flexible coupling strategy based on hetero-bis-metallated alkenes
Mario Altendorfer, Aruna Raja, Florenz Sasse, Herbert Irschik and Dirk Menche
DOI: 10.1039/C2OB26906F

Polyketides are a huge class of compounds; the largest group of naturally-occurring secondary metabolites, bearing rich diversity in both structure and biological activity. Because they are beautiful molecules with challenging structures, polyketide synthesis has been a source of inspiration for many an organic chemist.

Dirk Menche and his group at the University of Heidelberg have been investigating the polyketide etnangien, a potent antibiotic that inhibits RNA-polymerase. The molecule is named for Mt. Etna, the soil of which yielded the producing strain of myxobacteria Sorangium cellulosum.

A macrolactone with an extensive polyene sidechain and boasting 12 stereogenic centres, this molecule is no straightforward synthetic target. It is also extremely unstable which adds to the challenge.

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Butanol aids the cyclisation of snake venom

In this HOT article, John C. Vederas and co-workers at University of Alberta report the ring-closing metathesis of unprotected, synthetic analogues of oxytocin (a mammalian hormone) and crotalphine (an analgesic isolated from rattlesnake venom). The replacement of cysteine with S-allylcysteine enables ring-closing metathesis to proceed in water, in the presence of magnesium chloride and tert-butanol co-solvent.

Disulfide bridges are critical for peptide folding, stability and biological activity. This technique enables the replacement of a disulfide bridge with a dicarba linkage, improving stability yet retaining biological activity.

The trick to performing these cyclisations in the aqueous phase is to use tert-butanol or detergent micelles to solubilise the ruthenium catalyst. The addition of magnesium chloride is required to disrupt non-productive chelation between the ruthenium-carbene and unprotected hydroxyl, carboxyl and primary amide functionalities. Low yields with non-sulphur containing peptide analogues indicate that the sulphur atom is a prerequisite for successful ring-closing metathesis in these peptides.

This technique opens up the possibility of performing cyclisations that cannot be achieved on-resin, such as the ring-closing metathesis of crotalphine analogues (due to either complex formation between catalyst and amide backbone and/or hydrophobic peptide protecting groups). Additionally, this method avoids extensive synthetic effort to modify the ruthenium catalyst to optimise aqueous solubility.

Investigation of the ring-closing metathesis of peptides in water
Stephen A. Cochrane, Zedu Huang and John C. Vederas
DOI: 10.1039/C2OB26938D

Published on behalf of Steve Moore, Organic & Biomolecular Chemistry web science writer.

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OBC issue 3 online now, featuring: cylindrical peptides, tubulin inhibitors, aliphatic C–H functionalization & much more

On the front cover (right) of this week’s issue is a paper on cylindrical peptide assemblies from Andrew D. Abell and colleagues from The University of Adelaide. Abell et al. present a new template-based approach to peptide based nanotubes using a ‘smart’ scaffold designed to be constrained into a β-strand geometry.

New cylindrical peptide assemblies defined by extended parallel β-sheets
Ashok D. Pehere, ChRistopher J. Sumby and Andrew D. Abell
DOI: 10.1039/C2OB26637G

Featuring on the inside cover (left) is a paper from Mouad Alami, Abdallah Hamze and co-workers reporting the synthesis and antiproliferative activity of tri- and tetrasubstituted 1,1-diarylolefins related to isocombretastatin A-4.

Synthesis, biological evaluation, and structure–activity relationships of tri- and tetrasubstituted olefins related to isocombretastatin A-4 as new tubulin inhibitors
Abdallah Hamze and Mouad Alami et al.
DOI: 10.1039/C2OB26253C

Both cover articles are free to access for 6 weeks.

Also in this issue and free to access:

HOT – Sulfoxide-TFAA and nucleophile combination as new reagent for aliphatic C–H functionalization at indole 2α-position

HOT – Integrin and matrix metalloprotease dual-targeting with an MMP substrate–RGD conjugate

HOT – Organocatalytic conjugate addition promoted by multi-hydrogen-bond cooperation: access to chiral 2-amino-3-nitrile-chromenes

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HOT: Aliphatic C–H functionalization at indole 2α-position

Scientists from Japan report on the use of thionium activation for nucleophilic functionalization of indole derivatives at the 2-alpha position.

In this hot paper Kazuhiro Higuchi and Tomomi Kawasaki and coworkers at Meiji Pharmaceutical University expand on their communication from Chem. Comm. on the aliphatic C–H functionalization at the indole 2α-position mediated by acyloxythionium species generated from sulfoxides, including DMSO, and TFAA.

By using this method the indole ring is transformed into an allyl thionium species, and so is highly activated for nucleophilic attack from a wide variety of nucleophiles. Kawasaki make use of simple and readily available reagents, making the reaction a convenient route to functionalize alpha to the indole ring in a very straightforward fashion, enabling the introduction of O-, N- and C- substituents in a one-pot procedure.

For all the details read this paper for free today.

Sulfoxide-TFAA and nucleophile combination as new reagent for aliphatic C–H functionalization at indole 2α-position
Masanori Tayu, Kazuhiro Higuchi, Masato Inaba and Tomomi Kawasaki
DOI: 10.1039/C2OB26944A

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Dual-targeting of Integrin and matrix metalloprotease

In this HOT paper Didier Boturyn, Jean-Luc Coll and colleagues have designed a probe containing arginine-glycine-aspartic acid (RGD) that can be used for the dual-targeting of αVβ3 integrin and matrix metallopeptidase -9 extracellular proteases in tumours.

Boturyn et al. synthesise the probe via iterative oxime ligations of peptide fragments and use in vitro and in vivo experiments to evaluate it.

To find out more about this dual-targeting probe download the paper for free today!

Integrin and matrix metalloprotease dual-targeting with an MMP substrate–RGD conjugate
Christiane H. F. Wenk, Véronique Josserand, Pascal Dumy, Jean-Luc Coll and Didier Boturyn
DOI: 10.1039/C2OB26926K

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Multi-hydrogen-bond cooperation to access chiral 2-amino-3-nitrile-chromenes

In this HOT communication Jian Wang and colleagues at National University of Singapore report an efficient method to construct enantiomeric 2-amino-3-nitrile-chromenes through 2-iminochromenes and malonates. Using a thiourea catalyst Wang et al. rapidly construct the 2-amino-3-nitrile-chromene complexes via a multi-hydrogen-bond cooperative activation model.

For the details of their study download the communication today; it’s free to access for 4 weeks.

Organocatalytic conjugate addition promoted by multi-hydrogen-bond cooperation: access to chiral 2-amino-3-nitrile-chromenes
Wenjun Li, Jiayao Huang and Jian Wang
DOI: 10.1039/C2OB27102H

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Nanoscience: Using DNA origami as a scaffold to assemble uniform length carbon nanotubes

Scientists in the US have developed a convenient, versatile method to organise discrete length single-walled carbon nanotubes (SWNT) into complex geometries using 2D DNA origami tiles. Constructing intricate geometric arrangements of components is one of the central challenges of nanotechnology. The origami scaffolds considered here, both rectangular and triangular, were used to organise the nanotubes: several arrangements of nanotubes were constructed, with defined tube lengths and inter-tube angles. This method allows for uniform tube lengths and positional precision, leading to the reliable assembly of SWNTs into well-structured arrays.

Graphical Abstract

DNA origami templated self-assembly of discrete length single wall carbon nanotubes
Zhao Zhao, Yan Liu and Hao Yan
Org. Biomol. Chem., 2013, Advance Article
DOI: 10.1039/C2OB26942B

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Cyclodextrin-surfactant complexes: a chain length balancing act

Cyclodextrins are macrocyclic oligomers of α-D-glucose. Their interaction with guest molecules is largely driven by the hydrophobic effect (the expulsion of water from the lipophilic cavity, into bulk, is entropically favourable).

In this HOT paper Cepeda and co-workers explore the solution phase behaviour of β-cyclodextrin/alkyltrimethylammonium bromide mixtures, varying the surfactant alkyl chain length from hexyl (C6) to octadecyl (C18).

Cepeda et al. employ the solvolysis of methoxybenzenesulfonyl chloride (MBSC) as a UV ‘handle’ to monitor the interaction between β-cyclodextrin and surfactant guests. In the presence of aggregated cationic surfactants, MBSC hydrolysis is hindered, owing to the reduced polarity of the micelle interior. MBSC solvolysis can be used to monitor the integrity of surfactant micelles and to calculate the concentration of unbound cyclodextrin.

In the presence of aggregated surfactants Cepeda et al. detect a significant concentration of ‘free’ β-cyclodextrin; the highest of which with decyl (C10) and dodecyl (C12) surfactants. This reflects the balance between the hydrophobic effect (smaller surfactant chains displace less water from the cyclodextrin cavity) and surfactant self-assembly (longer surfactant chains favour micelle formation).  The new model created to describe these interactions will aid the further development of commercial applications for these systems.

Competition between surfactant micellization and complexation by cyclodextrin
M. Cepeda, R. Daviña, L. García-Río, M. Parajó, P. Rodríguez-Dafonte and M. Pessêgo
DOI: 10.1039/C2OB26318A

Published on behalf of Steve Moore, Organic & Biomolecular Chemistry web science writer.

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