Top Ten most-read Soft Matter articles in March

The latest top ten most downloaded Soft Matter articles

See the most-read papers of March 2011 here:

Michael E. Cates and Fred C. MacKintosh, Soft Matter, 2011, 7, 3050-3051
DOI: 10.1039/C1SM90014E
 
Olivier J. Cayre, Nelly Chagneux and Simon Biggs, Soft Matter, 2011, Advance Article
DOI: 10.1039/C0SM01072C
 
Georgi Stoychev, Nikolay Puretskiy and Leonid Ionov, Soft Matter, 2011, 7, 3277-3279
DOI: 10.1039/C1SM05109A
 
Naohiro Kameta, Hiroyuki Minamikawa and Mitsutoshi Masuda, Soft Matter, 2011, Advance Article
DOI: 10.1039/C0SM01559H
 
Han-Sheng Sun, Chia-Hao Lee, Chia-Sheng Lai, Hsin-Lung Chen, Shih-Huang Tung and Wen-Chang Chen, Soft Matter, 2011, 7, 4198-4206
DOI: 10.1039/C0SM01385D
 
Szilard N. Fejer, Dwaipayan Chakrabarti and David J. Wales, Soft Matter, 2011, 7, 3553-3564
DOI: 10.1039/C0SM01289K
 
Cornelus F. van Nostrum, Soft Matter, 2011, 7, 3246-3259
DOI: 10.1039/C0SM00999G
 
Bo Liu, Jie Yang, Miao Yang, Yongliang Wang, Nan Xia, Zijian Zhang, Ping Zheng, Wei Wang, Ingo Lieberwirth and Christian Kübel, Soft Matter, 2011, 7, 2317-2320
DOI: 10.1039/C1SM05032J
 
Jung Kwon Oh, Soft Matter, 2011, Advance Article
DOI: 10.1039/C0SM01539C
 
Stephen J. Eichhorn, Soft Matter, 2011, 7, 303-315
DOI: 10.1039/C0SM00142B
 

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Biocompatible neural prosthetic electrode coatings

 Bioelectrode materials have huge potential for use in neural prosthetic devices, such as the cochlear implant. Researchers have developed a gellan gum doped polypyrrole (conducting polymer) coating which enhanced the electrochemical properties of neural prosthetic electrodes. Gellan gum is a biologically derived polysaccharaide which has applications in tissue engineering and drug delivery.


Read here for free until May 24…

Thomas M. Higgins, Simon E. Moulton, Kerry J. Gilmore, Gordon G. Wallace and Marc in het Panhuis,

Soft Matter, 2011, Advance Article, DOI: 10.1039/C1SM05063J, Paper

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Locomotion in fluids

Various low Reynolds number swimmers. (a) E coili bacterium. (b) Swimming spermatozoon of Ciona intestinalis. (c) Paramecium cell.

This month’s fluid dynamics symposium, run by the Max-Planck Institute for Dynamics and Self-Organisation was on the topic of locomotion in fluids. Talks were given by Anders Andersen from the Technical University of Denmark, on Copepod dynamics, Albert Bae from UC San Diego, on swimming amoebae and Eric Stellamanns from the Max-Planck Institute for Dynamics and Self-Organisation, on Trypanosome motility.

Copepod hydrodynamics

Copepods are a group of small crustaceans and zooplankton found in both salt and fresh water environments. In terms of other plankton Copepods are fairly large, ranging in size from a few hundred microns to a few millimetres. In order to catch prey and escape from predators, the Copepods have small sensory hairs along their antenna and tails. These hairs or setae, detect small disturbances in the surrounding environment. If the disturbance is small (only picked up by few hairs) then the Copepod knows prey is nearby and can attack. If the disturbance is large (picked up by many hairs) then the Copepod knows to get ready to flee a potential predator.

In order to capture prey, the Copepods use ambush feeding. Most of the time the Copepod is motionless in the water waiting for prey to swim by. When one does, the Copepod springs into motion capturing the prey. The whole process of detection to capture takes only a few milliseconds, with the Copepod attacking at speeds of ~100 mm/s. On Anderson’s website a series of images can be found showing the attack process.

Apart from the speed and motion during attack, the main point of interest is that the prey remains stationary during the whole process, despite the Copepod moving substantially. This is of course necessary for a successful ambush; if the prey notices the Copepod moving it will potentially be able to escape. Simulations show that only a very thin viscous boundary layer develops around the attacking Copepod due to its high Reynolds number ~100, minimising the flow around the prey and preventing detection. The results were published in PNAS.

Also discussed in the talk were the kinematics of escape jumps in the Copepods. Copepods of all sizes use a cycle of power strokes and passive coasting to move from one place to another. Each cycle lasts 10-20 ms with  the ratio of the stroke time to coasting time varying with the size of the Copepod. This mechanism results in a highly fluctuating escape velocity, with speeds of 120-450 mm/s being reached. The results can be found in the Journal of the Royal Society Interface, where a simple swimming model in used to accurately capture the kinematics of the motion.

Related papers in Soft Matter

Two recent interesting papers, published in Soft Matter, on the locomotion in fluids include: Life around the scallop theorem, Eric Lauga. This paper reviews methods of locomotion for swimmers at low Reynolds numbers. Hydrodynamic synchronisation at low Reynolds number, Ramin Golestanian et al. This paper reviews recent experimental and theoretical work on hydrodynamic synchronisation, such as that seen between bacterial flagella.

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APS March Meeting – Prize Winners

AFM image of protein fibres

In addition to the conference, the APS prizes and awards are conferred at the APS March meeting. Of the 18 awarded this year, 8 went to researchers in the soft matter field. Below I have highlighted some of the winners along with some information about their work.

John Dillon Medal – Raffaele Mezzenga, University of Fribourg

This prize was awarded to Mezzenga for exceptional contributions to the understanding of self-assembly principles and their use to design and control materials with targeted functionalities. Menzzenga’s work involves the study of protein fibrils. While important in neuro-degenerative diseases, protein fibrils are also found as building blocks in food. Menzzenga’s talk focused on his work on the formation of long linear multi-stranded protein fibre structures and their self-assembly. A discussion on how these fibres are formed was recently published in Soft Matter (doi:10.1039/c0sm00502a). Initially single filaments are formed. Short-ranged interactions between the filaments then lead to aggregation and almost perfect alignment of the filaments to form multi-stranded fibrils. Twisting of the fibrils then results from repulsive electrostatic interactions between the fibrils.  Other recent papers look at the disassembly of protein fibrils (Soft Matter doi: 10.1039/C0SM01253J) and whether and how lyotropic liquid crystal phases can be used to host, encapsulate and direct the assembly of amyloid fibrils (Soft Matter doi:10.1039/c0sm01339k).

Polymer prize – Gary Crest, Sandia National Laboratory and Kurt Kremer, Max-Planck Institute for polymer research

This prize was awarded jointly to Crest and Kremer for establishing numerical simulation as a tool, on an equal footing with experiment and theory, in the field of polymer science, as exemplified by the seminal simulations of entangled polymer melt dynamics.

Biological physics doctoral thesis award “Evolution and emergence of structure” – Erez Lieberman-Aiden, Havard University

Lieberman-Aiden received this years award for outstanding doctoral thesis in biological physics. This is not the only award that Lieberman-Aiden has recently received. He was also the winner of the Lemelson-MIT student prize in 2010 for his inventive work on mapping out the 3-D structure of the genome. As a graduate student Lieberman-Aiden developed Hi-C, a new technology which allowed for the 3-D structure of the genome to be probed, providing insight into how the double helix DNA folds and fits in to the nucleus of a human cell. The results were published in Science. Further information on his work and publications can be found on his website.

Leroy Apker Award – Chai Wei Hsu, Wesleyan University.

The Leroy-Apker prize recognises achievements in physics by undergraduate students. The prize was awarded jointly to Christopher Chudzicki for his work on parallel entanglement distribution on hypercube networks and to Chai Wei Hsu for his work on the self-assembly of DNA-linked nanoparticles. Chai Wei Hsu looked at the phase behaviour of nanoparticles tethered with DNA strands and developed a theoretical description for the behaviour observed. These nanoparticles are able to self assemble into well ordered structures due to the complimentary bonding of base pairs. Chai’s thesis is available online here.

A paper on the self-assembly of DNA structures has also recently appeared in Soft Matter. In their article ‘Self-assembling DNA templates for programmed artificial biomineralization’, Samano et al. discuss the use of DNA-directed patterning of inorganic materials for various technological applications including electronics and photonics.

Max Delbruck Biological Physics Prize – Xiaowei Zhuang, Havard University.

This prize, for outstanding achievement in biological physics, was awarded to Zhuang for her contributions to the field of single molecule biophysics and super-high resolution imaging. A Professor at Havard, Zhuang’s research involves developing tools to visualise biomolecular processes on scales smaller than the resolution limit of conventional light microscopy. In her talk she discussed a new method of imaging – Stochastic Optical Reconstruction Microscopy (STORM). This technique utilises photo-switchable fluorescent probes. The final image is reconstructed from a series of images. Only a fraction of the probes are switched on for each image in the cycle, allowing the positions of the probes to be determined with nanometer accuracy. The imaging method was described in Nature Methods.

A full of prize winners for 2011 can be found on the APS website.

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Hot Article: Cell migration on a micropost array

Micromachining processes have been developed for observing durotaxis (mechanotaxis) – the directional movement of cells.  Bovine aeortic endothelial cells were seeded on a micropost array, fabricated by a highly reproducible method. The cells exhibited higher displacement and speed in the direction of increasing micropost stiffness.

Unidirectional mechanical cellular stimuli via micropost array gradients

Read the whole article for free here, until May6…. Ryan D. Sochol, Adrienne T. Higa, Randall R. R. Janairo, Song Li and Liwei Lin, Soft Matter, 2011, (Advance Article), DOI: 10.1039/C1SM05163F, Communication

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Hot Article on Ferronematics

Macroscopic optical effects in low concentration ferronematicsA new theory of ferronematics to describe the optical response of ferromagnetic nanoparticles in nematic liquid crystals has been developed. The ferroparticle nanosuspension in the liquid crystal matrix exhibited much higher sensitivity to magnetic fields than the undoped liquid crystal, highlighting the potential for the use of these materials in magnetically driven devices.

Read more for free here… until May 6

Nina Podoliak, Oleksandr Buchnev, Oleksandr Buluy, Giampaolo D’Alessandro, Malgosia Kaczmarek, Yuriy Reznikov and Timothy J. Sluckin, Soft Matter, 2011, Advance Article, DOI: 10.1039/C1SM05051F, Paper

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Soft Matter Issue 8, 2011 now online

Soft Matter Covers

Soft Matter issue 8 is now online. The outside front cover features “Photochromic materials with tunable color and mechanical flexibility” by Hyun-Kwan Yang, A. Evren Özçam, Kirill Efimenko and Jan Genzer (Soft Matter, 2011, 7, 3766-3774).

Highlighted on the inside front cover is the paper “Non-lithographic electrochemical patterning of polypyrrole arrays using single-layered colloidal templates on HOPG surface: effects of electrodeposition time and field-gradient” by Jin Young Park, Pampa Dutta and Rigoberto Advincula (Soft Matter, 2011, 7, 3775-3779)

The issue also includes 5 hot articles.

Emerging Area: Emerging area: biomaterials that mimic and exploit protein motion
William L. Murphy, Soft Matter, 2011, 7, 3679-3688

Communication: “Host–guest” interaction between cyclohexasilane and amphiphilic invertible macromolecules
Ananiy Kohut, Xuliang Dai, Danielle Pinnick, Douglas L. Schulz and Andriy Voronov, Soft Matter, 2011, 7, 3717-3720

Communication: Extraordinary long range order in self-healing non-close packed 2D arrays
Stefan B. Quint and Claudia Pacholski, Soft Matter, 2011, 7, 3735-3738

Communication: Universal soft matter template for photonic applications
Luciano De Sio, Sameh Ferjani, Giuseppe Strangi, Cesare Umeton and Roberto Bartolino, Soft Matter, 2011, 7, 3739-3743

Communication: Compartment size dependence of performance of polymerase chain reaction inside giant vesicles
Koh-ichiroh Shohda, Mieko Tamura, Yoshiyuki Kageyama, Kentaro Suzuki, Akira Suyama and Tadashi Sugawara, Soft Matter, 2011, 7, 3750-3753

The back cover showcases the work of S. Torquato, Chase E. Zachary and F. H. Stillinger. Duality relations for the classical ground states of soft-matter systems (Soft Matter, 2011, 7, 3780-3793). You can read the full issue here. I hope you enjoy it.

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Hot Article: Effect of stress state on wrinkle morphology

In this Hot Article Derek Breid and Alfred Crosby at the University of Massachusetts, USA, look at the effect of stress on wrinkles in thin films of poly(dimethylsiloxane). The team say their results highlight the importance of stress conditions on the formation of wrinkle patterns and this could help create patterned surfaces.

Graphical abstract: Effect of stress state on wrinkle morphology

Interested to know more? You can read the full article for free until 3rd May.
Derek Breid and Alfred J. Crosby, Soft Matter, 2011, Advance Article DOI:10.1039/C1SM05152K

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Hot Article: Polydispersity induced solid–solid transitions in model colloids

Polydispersity induced solid–solid transitions in model colloidsResearchers use Monte Carlo simulation techniques to determine the thermodynamically optimal structure for spherical colloids with different diameters. The question being, what stable lattice structures arise from packing of polydisperse particles? The authors take into account fractionation, the phenomenon where particle diameters can vary from one coexisting phase to another, for their simulations.

Read the article for free here until May 4: Peter Sollich and Nigel B Wilding
Soft Matter, 2011, Advance Article, DOI: 10.1039/C0SM01367F, Paper

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Hot Article: Hydrogel microspheres for non-close packed 2D arrays

The unique properties of hydrogels, such as self-healing and tuneable solubility, have been exploited to fabricate 2D non-closed packed arrays with exceptional long range order. The poly(N-isopropylacrylamide) microspheres used can tolerate inclusions without the introduction of dislocations unlike hard sphere colloids.

Extraordinary long range order in self-healing non-close packed 2D arrays

This method is a convenient alternative to the Langmuir-Blodgett technique for fabricating ordered arrays of densely packed 2D spheres. The colloidal lithography demonstrated here could be used to pattern surfaces for application in optics and sensing.

Read the article for free here until May 4: Stefan B. Quint and Claudia Pacholski, Soft Matter, 2011, Advance Article, DOI: 10.1039/C1SM05058C, Communication

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