Archive for February, 2012

RSC Publishing poster prizes awarded at ISMSC

Congratulations to the following students who were awarded ChemComm, Dalton Transactions and Organic & Biomolecular Chemistry poster prizes at the 2012 International Symposium on Macrocyclic and Supramolecular Chemistry (ISMSC) at the University of Otago in Dunedin, New Zealand:

  • Jean-Francois Ayme (Edinburgh) – “Pentameric Circular Helicates as a Scaffold for a Molecular Pentafoil Knot”
  • Jessica Holmes (Melbourne) –  “Supramolecular Systems of Cyclotricatechylene”
  • David Hvasanov (UNSW) –  “Photoinduced membrane proton-pumping via polymersomes as chloroplast mimics”

The poster prize winners with Professor Phil Gale from the ISMSC-2012 International Advisory Committee (photo courtesy of Scott Cameron from the Brooker group)

Nominations for the 2013 Cram Lehn Pedersen prize to be awarded at ISMSC-8 in Crystal City, Virginia, USA, will open later in the year. Stay tuned to the ChemComm blog for details.

Related news:
Cram Lehn Pedersen Prize awarded at ISMSC

Posted on behalf of Joanne Thomson

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Computers look at life-giving reactions in space

Theoretical chemistry could answer some questions about how life on earth originated, say Australian researchers.

Although we know amino acids were vital in the genesis of life, how they first appeared on earth is still under much debate. One theory is that they were introduced from space, having been synthesised in molecular clouds from simpler radicals. However, at almost absolute zero temperatures, it would be very difficult for any molecular collision to overcome the activation energy barrier. Unfortunately, owing to these extreme conditions, it is impossible to conduct laboratory experiments to investigate this.

Noticing that a number of possible interstellar reactions involve hydrogen transfer, John Bowie and Tianfang Wang at the University of Adelaide considered the possibility that they may be assisted by hydrogen tunnelling effects. Hydrogen tunnelling occurs when hydrogen atoms or nuclei take part in a reaction without having to overcome an energy barrier; instead they ‘tunnel’ through it. The team used high level computational methods to study how tunnelling affects isomerisation reactions that may either help or hinder the synthesis of biologically important molecules.

Meteorite

Molecules of life are thought to have been introduced to earth by collisions from comets or meteorites

‘Let us propose, for example, that ?CH2NH2 and ?CN react to form the glycine precursor NH2CH2CN,’ explains Bowie, ‘if [?CH2NH2] isomerises rapidly to CH3NH?, then the proposed synthesis is not practical.’

They found that although these reactions show significant tunnelling effects, the rate constants for most of them would still be too slow for reaction to occur.

Holger Somnitz, a theoretical chemistry expert at the University of Duisburg-Essen, Germany, appreciates the information obtained. ‘The [researchers] have quantified the effect of tunnelling. and provided valuable information on the potential energy along the minimum energy path,’ he says. However, he points out that the true impact of the work will only be revealed after experimental confirmation of the interstellar existence of the studied radicals.

Recognising the usefulness of the information obtained from their calculations, the researchers are now turning their attention to tunnelling effects in other fields of interest, such as in proteomics.

Hydrogen tunnelling influences the isomerisation of some small radicals of interstellar importance. A theoretical investigation.
Tianfang Wang and John H. Bowie
DOI: 10.1039/C2OB07102A

Read the original article at Chemistry World

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HOT: Uncovering a key enzyme in antibiotic D-cycloserine biosynthesis

In this OBC ‘Hot paper’ John C. Vederas and coworkers describes studies on a key enzyme (DscC) in the biosynthesis of the important antibiotic D-cycloserine – commonly used against Mycobacterium tuberculosis when resistance to other antibiotics is observed.

The enzyme is proposed to be an epimerase based on sequence similarity to a known enzyme DapF (diaminopimelate epimerase), and the authors show that DscC indeed displays the predicted activity, namely O-ureidoserine racemization.

The determination of the 3D stucture of the enzyme is underway.

‘Comparison of the enzymatic residues that are responsible for recognition of the non-reacting distal site of the enzyme could lead to the ability to rationally design enzymes that can induce epimerization of other amino acids’, conclude the authors.

Read more and access the full article hereFREE to download for a period of four weeks!



Characterization of DcsC, a PLP-independent racemase involved in the biosynthesis of D-cycloserine
David Dietrich, Marco J. van Belkum and John C. Vederas
Org. Biomol. Chem., 2012, 10, 2248-2254
DOI: 10.1039/C2OB06864H,

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Hot Perspective: Using trichlorosilane for the organocatalysed reduction of ketimines

Following the recent highlight of topical reviews in OBC, here is our latest ‘Hot Perspective’:

  •  read about the most advanced developments on Trichlorosilane mediated asymmetric reductions of the C=N bond in this review article by Simon Jones and Christopher J. A. Warner.

Concise but thorough, the review will take you through efficient and economical ways to access chiral amines via the trichlorosilane mediated organocatalytic reduction of ketimines, and provide a direct quantitative comparison to transition-metal mediated process.

Trichlorosilane mediated asymmetric reductions of the C=N bond
Simon Jones and Christopher J. A. Warner
Org. Biomol. Chem., 2012, 10, 2189-2200
DOI: 10.1039/C2OB06854K, Perspective

This Perspective will be FREE to access for the next 4 weeks 
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Coupling of unactivated aldehydes and Anticancer activity of oleanolic acid derivatives on the cover of OBC issue 11

Welcome to OBC issue 11, 2012 

Oscar Navarro and colleagues at the University of Hawaii at Manoa have used well-defined (N-heterocyclic carbene)–Ag(I) complexes for the A3 reaction, thereby allowing for the coupling of unactivated aldehydes at room temperature with very short reaction times. This work is featured on OBC‘s outside front cover, showcasing a scheme of the reaction depicted in their article over a picture of the coast of Lanikai, in Hawaii.

Well-defined (N-heterocyclic carbene)–Ag(I) complexes as catalysts for A3 reactions
Ming-Tsz Chen, Brant Landers and Oscar Navarro 
DOI: 10.1039/C2OB06900H 

The inside front cover illustrates work by Barbara Bednarczyk–Cwynar et al. at Poznan University of Medical Sciences, Poland, who highlight the strong cytotoxic activity on KB, MCF-7 and HeLa cell lines of novel A-ring or/and C-ring modified methyl oleanolate derivatives.

Anticancer effect of A-ring or/and C-ring modified oleanolic acid derivatives on KB, MCF-7 and HeLa cell lines
Barbara Bednarczyk–Cwynar, Lucjusz Zaprutko, Piotr Ruszkowski and Bogusław Hładoń
DOI: 10.1039/C2OB06923G

Interested? Why not read both communications, they are FREE to access for the next 6 weeks.

 

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Countdown to OBC’s 10th anniversary continues with tin and aluminium!

Continuing our countdown to OBC’s 10th anniversary issue, we’ve collected together 10 tin and aluminium related articles published in the journal. Why? An old tradition in the UK is to give gifts of made of symbolic materials on significant wedding anniversaries, and the metals associated with a 10th wedding anniversary are tin and aluminium. Now, we don’t have any trinkets for you, but why not take a look at some of these interesting tin and aluminium-themed articles!

Effective 1,5-, 1,6- and 1,7-remote stereocontrol in reactions of alkoxy- and hydroxy-substituted allylstannanes with aldehydes
John S. Carey, Somhairle MacCormick, Steven J. Stanway, Aphiwat Teerawutgulrag and Eric J. Thomas
DOI: 10.1039/C0OB01084G

A selective, cell-permeable fluorescent probe for Al3+ in living cells
Lina Wang, Wenwu Qin, Xiaoliang Tang, Wei Dou, Weisheng Liu, Qingfeng Teng and Xiaojun Yao
DOI: 10.1039/C0OB00123F, Paper

Microwave-assisted regioselective ring opening of non-activated aziridines by lithium aluminium hydride
Sonja Stanković, Matthias D’hooghe and Norbert De Kimpe
DOI: 10.1039/C004960C

Synthesis of Biginelli dihydropyrimidinone derivatives with various substituents on aluminium-planted mesoporous silica catalyst
Hiroaki Murata, Haruro Ishitani and Masakazu Iwamoto
DOI: 10.1039/B920821F, Paper

Intramolecular carbolithiation reactions for the preparation of 3-alkenylpyrrolidines
Iain Coldham, Kathy N. Price and Richard E. Rathmell
DOI: 10.1039/B303670G

Rapid methylation on carbon frameworks useful for the synthesis of 11CH3-incorporated PET tracers: Pd(0)-mediated rapid coupling of methyl iodide with an alkenyltributylstannane leading to a 1-methylalkene
Takamitsu Hosoya, Kengo Sumi, Hisashi Doi, Masahiro Wakao and Masaaki Suzuki
DOI: 10.1039/B515215A

Aluminium triflate: a remarkable Lewis acid catalyst for the ring opening of epoxides by alcohols
D. Bradley G. Williams and Michelle Lawton
DOI: 10.1039/B508924G

Cyclizative radical carbonylations of azaenynes by TTMSS and hexanethiol leading to α-silyl- and thiomethylene lactams. Insights into the E/Z stereoselectivities
Mami Tojino, Noboru Otsuka, Takahide Fukuyama, Hiroshi Matsubara, Carl H. Schiesser, Hiroki Kuriyama, Hironari Miyazato, Satoshi Minakata, Mitsuo Komatsu and Ilhyong Ryu
DOI: 10.1039/B309944J

Photochemical intramolecular aromatic substitutions of the imidazol-2-yl radical are superior to those mediated by Bu3SnH
Mairéad A. Clyne and Fawaz Aldabbagh
DOI: 10.1039/B512729G

On the use of mixtures of organotin species for catalytic enantioselective ketone allylation—a detective story
Anthony Cunningham, Vijaya Mokal-Parekh, Claire Wilson and Simon Woodward
DOI: 10.1039/B313384B

Missed our other 10th anniversary posts? Take a look here for some of our top cited work.

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Top ten most accessed articles in December

This month sees the following articles in Organic & Biomolecular Chemistry that are in the top ten most accessed:

Is nevirapine atropisomeric? Experimental and computational evidence for rapid conformational inversion
Edmund W. D. Burke, Gareth A. Morris, Mark A. Vincent, Ian H. Hillier and Jonathan Clayden
Org. Biomol. Chem., 2012, 10, 716-719
DOI: 10.1039/C1OB06490H

A one-pot catalysis: the strategic classification with some recent examples
Nitin T. Patil, Valmik S. Shinde and Balakrishna Gajula
Org. Biomol. Chem., 2012, 10, 211-224
DOI: 10.1039/C1OB06432K

N-Heterocyclic carbene catalysed aerobic oxidation of aromatic aldehydes to aryl esters using boronic acids
Panjab Arde, B. T. Ramanjaneyulu, Virsinha Reddy, Apurv Saxena and R. Vijaya Anand
Org. Biomol. Chem., 2012, 10, 848-851
DOI: 10.1039/C1OB06566A

Direct preparation of thiazoles, imidazoles, imidazopyridines and thiazolidines from alkenes
Timothy J. Donohoe, Mikhail A Kabeshov, Akshat H. Rathi and Ian E. D. Smith
Org. Biomol. Chem., 2012, 10, 1093-1101
DOI: 10.1039/C1OB06587D

Towards the systematic exploration of chemical space
Mark Dow, Martin Fisher, Thomas James, Francesco Marchetti and Adam Nelson
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06098H

Fluoride-selective optical sensor based on the dipyrrolyl-tetrathiafulvalene chromophore
Shadi Rivadehi, Ellen F. Reid, Conor F. Hogan, Sheshanath V. Bhosale and Steven J. Langford
Org. Biomol. Chem., 2012, 10, 705-709
DOI: 10.1039/C1OB06459B

Syntheses of furo[3,4-c]coumarins and related furyl coumarin derivatives via intramolecular Wittig reactions
Yeong-Jiunn Jang,  Siang-en Syu,  Yu-Jhang Chen,  Mei-Chun Yang and Wenwei Lin
Org. Biomol. Chem., 2012, 10, 843-847
DOI: 10.1039/C1OB06571H

Synthesis and biological activity of phosphonoacetate- and thiophosphonoacetate-modified 2′-O-methyl oligoribonucleotides
Richard N. Threlfall, Adrian G. Torres, Angelika Krivenko, Michael J. Gait and Marvin H. Caruthers
Org. Biomol. Chem., 2012, 10, 746-754
DOI: 10.1039/C1OB06614E

C–H functionalization of tertiary amines by cross dehydrogenative coupling reactions: solvent-free synthesis of α-aminonitriles and ß-nitroamines under aerobic condition
Kaliyamoorthy Alagiri and Kandikere Ramaiah Prabhu
Org. Biomol. Chem., 2012, 10, 835-842
DOI: 10.1039/C1OB06466E

Calixarene-induced aggregation of perylene bisimides
Dong-Sheng Guo,  Bang-Ping Jiang,  Xiang Wang and Yu Liu
Org. Biomol. Chem., 2012, 10, 720-723
DOI: 10.1039/C2OB06973C

Why not take a look at the articles today and blog your thoughts and comments below.

Fancy submitting an article to Organic & Biomolecular Chemistry? Then why not submit to us today or alternatively email us your suggestions.

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Collagen triple helices and click chemisry on the cover of OBC issue 10

Welcome to OBC issue 10!

OBC‘s cover this week features work by Helma Wennemers et al. at the University of Basel (Switzerland), who have used click chemistry to introduce moieties as sterically demanding as monosaccharides into the Yaa position of collagen model peptides, and studied the effect of different triazolyl derivatives as well as the configuration of the functionalized proline residue on the thermal stability of the collagen triple helices.

Conformational stability of collagen triple helices functionalized in the Yaa position by click chemistry

Roman S. Erdmann and Helma Wennemers
Org. Biomol. Chem., 2012, 10, 1982-1986
DOI: 10.1039/C2OB06720J

As with all of our cover articles, it will be FREE to access for the next 6 weeks

This article is part of OBC‘s web-themed issue on Foldamer Chemistry – View the full collection of articles here

The issue also contains:

three ‘Hot Articles’

and that’s just a taster… we hope you enjoy the whole issue!

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Top 10 Perspective articles from Organic & Biomolecular Chemistry

Continuing with our countdown to OBC’s 10th anniversary celebratory issue we’ve made the top cited* Perpsective articles from the journal free to access for one week:

1. Recognition and activation by ureas and thioureas: stereoselective reactions using ureas and thioureas as hydrogen-bonding donors
Yoshiji Takemoto
DOI: 10.1039/B511216H

2. Bifunctional transition metal-based molecular catalysts for asymmetric syntheses
Takao Ikariya,  Kunihiko Murata and Ryoji Noyori
DOI: 10.1039/B513564H

3. Analysis of the reactions used for the preparation of drug candidate molecules
John S. Carey,  David Laffan, Colin Thomson and Mike T. Williams
DOI: 10.1039/B602413K

4. Density functional theory with dispersion corrections for supramolecular structures, aggregates, and complexes of (bio)organic molecules
Stefan Grimme,  Jens Antony, Tobias Schwabe and Christian Mück-Lichtenfeld
DOI: 10.1039/B615319B

5. Mechanistic aspects of transition metal catalysed 1,6-diene and 1,6-enyne cycloisomerisation reactions
Guy C. Lloyd-Jones
DOI: 10.1039/B209175P

6. Multivalency in supramolecular chemistry and nanofabrication
Alart Mulder,  Jurriaan Huskens and David N. Reinhoudt
DOI: 10.1039/B413971B

7. Porphyrin–fullerene linked systems as artificial photosynthetic mimics
Hiroshi Imahori
2004, DOI: 10.1039/B403024A

8. Ru complexes bearing bidentate carbenes: from innocent curiosity to uniquely effective catalysts for olefin metathesis
Amir H. Hoveyda,  Dennis G. Gillingham,  Joshua J. Van Veldhuizen,  Osamu Kataoka,  Steven B. Garber,  Jason S. Kingsbury and Joseph P. A. Harrity
DOI: 10.1039/B311496C

9. Molecular similarity: a key technique in molecular informatics
Andreas Bender and Robert C. Glen
DOI: 10.1039/B409813G

10. DNA-programmed assembly of nanostructures
Kurt V. Gothelf and Thomas H. LaBean
DOI: 10.1039/B510551J

  • Interested in joining in with a Perspective article for OBC? Why not get in contact – we’d love to hear your ideas.

*Top cited Perspective articles according to ISI on the 1st of February 2012

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Chameleons and catalysis on the cover of the latest issue of OBC

The colourful images on our covers are from Andrew C. Benniston and Ming-Hua Xu et al.

Andrew Benniston (University of Newcastle) together with colleagues from Istanbul Technical University and Hacettepe University, Turkey have created a series of colour-responsive fluorescent fluorene-fused benzoquinones with potential for use as reactive oxygen species sensors.  One of the compounds synthesised exhibits ‘chameleon-like’ behaviour switching from red to blue fluorescence on reduction, and reverts back to red on reaction with ROSs.

Colour-responsive fluorescent oxy radical sensors
Baris Yucel, Bahar Sanli, Huseyin Akbulut, Suheyla Ozbey and Andrew C. Benniston
DOI: 10.1039/C2OB06825G

Ming-Hua Xu and colleagues at Shanghai Institute of Materia Medica have designed a structurally simple new class of chiral sulfur–olefin hybrid ligands – N-cinnamyl sulfinamides – for use in asymmetric catalysis. The ligands where tested in rhodium-catalyzed asymmetric 1,4-addition reactions, converting aryl boronic acids to α,β-unsaturated carbonyl compounds with up to 99% yield and 98% ee.

Design of N-cinnamyl sulfinamides as new sulfur-containing olefin ligands for asymmetric catalysis: achieving structural simplicity with a categorical linear framework
Shen-Shuang Jin, Hui Wang, Ting-Shun Zhu and Ming-Hua Xu
DOI: 10.1039/C2OB06723D

This issue also contains a review on the recognition properties of imidazole derivatives by Franscico Otón et al. and a hot article from Luis Simón and Jonathan Goodman on hydrogen-bond stabilization in oxyanion holes, showing that the 3D arrangement, rather than planar arrangement, of H-bonds stabilises oxyanion holes.

View the issue

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