Archive for November, 2011

Blocking cancer’s path

A concise synthesis of the natural product rasfonin could reignite interest in this molecule as a tool to develop cancer drugs, say scientists from the Netherlands.

Adriaan Minnaard and Ben Feringa’s group from the University of Groningen developed the synthesis, which has a higher overall yield and takes fewer steps than previous syntheses, they say.

Rasfonin could be important in cancer research because it inhibits a cell signalling pathway called the RAS pathway. ‘If a cell becomes cancerous, often you see that RAS, the most important protein in the pathway, is mutated,’ explains Minnaard. The mutated RAS keeps on signalling, so the cancer cells keep dividing. Rasfonin blocks the pathway by binding either to RAS or one of the other proteins in the pathway, but it’s not known which one. ‘Scientists would love to have rasfonin to investigate this further, but it takes too much time and effort to make,’ says Minnaard.

In a bid to make synthesis easier, the team has made rasfonin in 30 steps (21 in the longest linear sequence) and in 11 per cent overall yield. ‘It’s quite a lot of steps,’ admits Minnaard, ‘but given the overall yield and the good activity (which means that not so much compound is needed), the synthesis is suitable to prepare any quantity needed for research purposes.’ One main step was introducing the methyl groups in the upper chain of rasfonin using catalytic asymmetric conjugate addition and the other was forming the lower chain, which involved using Feringa butenolide, a building block developed by Feringa. ‘It makes our synthesis much more straightforward than the current two syntheses,’ says Minnaard.

Synthesis of rasfonin

The synthesis of rasfonin was developed using asymmetric conjugate addition and Feringa's butenolide

The first synthesis in 2003 elucidated the stereochemistry and structure of rasfonin, but was not aimed at creating a synthesis for producing large quantities. Masami Ishibashi from Chiba University, Japan, who carried out this synthesis, says that Minnaard and Feringa have achieved a highly stereoselective and efficient synthesis. ‘It may be strongly expected that this new route will accelerate the chemical biology of rasfonin to identify its target protein,’ says Ishibashi.

‘It is a nice piece of work, which highlights some of the asymmetric catalysis methods developed in Professor Feringa’s laboratory,’ adds Robert Boeckman from the University of Rochester, US, who carried out the second synthesis of rasfonin in 2006. Boeckman’s synthesis used chiral auxiliaries. ‘Boeckman changes the substrate in such a way that the stereochemical outcome will be the desired one, but he has to do a lot more steps with the substrates,’says Minnaard. ‘We have our information in the catalyst, which is more efficient.’

Interested? Read Elinor Richards’ full Chemistry World article here or download the OBC paper:

A concise asymmetric synthesis of (−)-rasfonin
Yange Huang, Adriaan J. Minnaard and Ben L. Feringa
Org. Biomol. Chem.
, 2012, Advance Article
DOI: 10.1039/C1OB06700A

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Top ten most accessed articles in October

This month sees the following articles in Organic & Biomolecular Chemistry that are in the top ten most accessed:

Tandem reactions initiated by copper-catalyzed cross-coupling: A new strategy towards heterocycle synthesis
Yunyun Liu and Jie-Ping Wan
Org. Biomol. Chem., 2011, 9, 6873-6894
DOI: 10.1039/C1OB05769C

Towards the systematic exploration of chemical space
Mark Dow, Martin Fisher, Thomas James, Francesco Marchetti and Adam Nelson
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06098H

Transannular Claisen rearrangement reactions for the synthesis of vinylcyclobutanes: formal synthesis of (±)-grandisol
Donald Craig, Kiyohiko Funai, Sophie J. Gore, Albert Kang and Alexander V. W. Mayweg
Org. Biomol. Chem., 2011, 9, 8000-8002
DOI: 10.1039/C1OB06619F

Nitrogen cation–π interactions in asymmetric organocatalytic synthesis
Shinji Yamada and John S. Fossey
Org. Biomol. Chem., 2011, 9, 7275-7281
DOI: 10.1039/C1OB05228D

N-Heterocyclic carbene-catalyzed 1,3-dipolar cycloaddition reactions: a facile synthesis of 3,5-di- and 3,4,5-trisubstituted isoxazoles
Shravankumar Kankala, Ravinder Vadde and Chandra Sekhar Vasam
Org. Biomol. Chem., 2011, 9, 7869-7876
DOI: 10.1039/C1OB06072D

Synthesis of enantioenriched γ-quaternary cycloheptenones using a combined allylic alkylation/Stork–Danheiser approach: preparation of mono-, bi-, and tricyclic systems
Nathan B. Bennett, Allen Y. Hong, Andrew M. Harned and Brian M. Stoltz
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06189E

The immobilisation of chiral organocatalysts on magnetic nanoparticles: the support particle cannot always be considered inert
Oliver Gleeson, Gemma-Louise Davies, Aldo Peschiulli, Renata Tekoriute, Yurii K. Gun’ko and Stephen J. Connon
Org. Biomol. Chem., 2011, 9, 7929-7940
DOI: 10.1039/C1OB06110K

Iron-catalyzed ene-type propargylation of diarylethylenes with propargyl alcohols
Shiyong Peng, Lei Wang and Jian Wang
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06456H

Recent advances in indole syntheses: New routes for a classic target
Rubén Vicente
Org. Biomol. Chem., 2011, 9, 6469-6480
DOI: 10.1039/C1OB05750B

Rhodium-catalysed enantioselective synthesis of 4-arylchroman-2-ones
Joseph C. Allen, Gabriele Kociok-Köhn and Christopher G. Frost
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06586F

Why not take a look at the articles today and blog your thoughts and comments below.

Fancy submitting an article to Organic & Biomolecular Chemistry? Then why not submit to us today or alternatively email us your suggestions.

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Glyco-hydantoin conjugate synthesis and mimicking GFP to improve fluorophores on the cover of Issue 24

On the front cover of our last 2011 issue is work from Alessandro Volonterio and colleagues developing a multi-component one-pot synthetic route to novel glyco-hydantoin conjugates, which may be used as synthons for glyco-pseudopeptides.

Three-component, one-pot sequential synthesis of glyco-hydantoin conjugates
Maria Cristina Bellucci, Alessandra Ghilardi and Alessandro Volonterio
DOI: 10.1039/C1OB06312J

On the inside front cover is work from Stefan Matile and colleagues, applying principles from green and red fluorescent proteins from jellyfish and corals to develop the properties of core-substituted naphthalenediimide and perylenediimide fluorophores. Some these newly synthesized fluorophores are able to cover all primary colours upon pH changes, and as such may find practical use in naked-eye sensing arrays.

Naphthalene- and perylenediimides with hydroquinones, catechols, boronic esters and imines in the core
Andrea Fin, Irina Petkova, David Alonso Doval, Naomi Sakai, Eric Vauthey and Stefan Matile
DOI: 10.1039/C1OB05702B

View the rest of Issue 24 here

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Challenges in Organic Chemistry and Chemical Biology Symposium

The first of the International Symposia on Advancing the Chemical Sciences (ISACS) series next year is to be Challenges in Organic Chemistry and Chemical Biology (ISACS7) on 12 – 15 June at the University of Edinburgh, UK.

See the excellent list of confirmed speakers and details of the abstract submission process here.

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HOT: indolizinones investigated

Alison R. Hardin Narayan and Richmond Sarpong have investigated the fundamental reactivity of indolizinones, relatively unexplored 6,5-N-fused bicycles.  They find that these bicycles have excellent ability to transfer stereochemistry  from the ring fusion position to other stereocenters, as well as readily undergoing Diels-Alder cycloadditions and selective hydrogenation, among other reactions.

To read more on the potential applications of indolizinones download the article now – it’s free to access for the next four weeks:

Indolizinones as synthetic scaffolds: fundamental reactivity and the relay of stereochemical information
Alison R. Hardin Narayan and Richmond Sarpong
DOI: 10.1039/C1OB06423A

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HOT: phosphoramidate d4T derivatives show in vitro anti-HIV activity

Uncovering a new type of phosphoramidite prodrug, Piet Herdewijn et al. at the Katholieke Universiteit Leuven (Belgium) describe the synthesis and biological evaluation of phosphoramidate d4T derivatives against HIV. Some of the newly synthesized compounds were found to act as chain terminators for HIV-1 RT, thus inhibiting HIV-1 replication.

This article has been selected as HOT and will be FREE to access for a period of 4 weeks.
Read all about it here, and let us know what you think:



Synthesis and in vitro enzymatic and antiviral evaluation of phosphoramidate d4T derivatives as chain terminators
Shiqiong Yang, Christophe Pannecouque, Eveline Lescrinier, Anne Giraut and Piet Herdewijn
DOI: 10.1039/C1OB06214J

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HOT: Systematic (chemical) space exploration – a challenge for synthetic chemists

Scaffold diversity of the organic chemistry universe

‘Chemists’ historical exploration of chemical space has been highly uneven and unsystematic’ write Adam Nelson and coworkers.  In this Perspective article they seek to pull together  synthetic strategies that have been designed to allow a more systematic discovery of biologically active small molecules, with particular emphasis on combinatorial strategies.

Areas covered:

  • The “build–couple–pair” approach
  • Ambiphile pairing reactions
  • Folding and branching pathways
  • Oligomer-based approaches to scaffold diversity

This hot article is free to access for the next four weeks – download today to read more on the ‘challenge for synthetic chemists in the twenty-first century’:

Towards the systematic exploration of chemical space
Mark Dow, Martin Fisher, Thomas James, Francesco Marchetti and Adam Nelson
DOI: 10.1039/C1OB06098H

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HOT: Practical utility of silyl-protected dioxaborinanes in rhodium-catalysed 1,4-addition reactions

This Hot Article by Christopher Frost et al. at the University of Bath (UK) describes the utility of novel silyl-protected dioxaborinanes, performing as excellent donors in rhodium-catalysed 1,4-addition reactions under anhydrous conditions. This approach allows the enantioselective addition to arylidene Meldrum’s acid derivatives and a subsequent asymmetric synthesis of 4-arylchroman-2-ones, an important class of bioactive and pharmaceutically-relevant compounds.

Why not read this OBC Communication now! It will be FREE to access for the next four weeks.


Rhodium-catalysed enantioselective synthesis of 4-arylchroman-2-ones
Joseph C. Allen, Gabriele Kociok-Köhn and Christopher G. Frost
Org. Biomol. Chem., 2012, Advance Article
DOI: 10.1039/C1OB06586F, Communication

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HOT: Novel source of acyl anions for intermolecular Stetter reactions

In this Hot Article, Alessandro Massi and colleagues at the University of Ferrara (Italy) disclose a novel approach to the Stetter reaction – the N-heterocyclic carbene (NHC)-catalyzed conjugate addition of acetyl anions to various α,β-unsaturated acceptors – in which 2,3-butandione (biacetyl) is used as an alternative surrogate of acetaldehyde.

We hope this new approach to NHC polarity reversal organocatalysis will catch your interest! You can read the article for FREE for the next 4 weeks.


Thiazolium-catalyzed intermolecular Stetter reaction of linear and cyclic alkyl α-diketones
Olga Bortolini, Giancarlo Fantin, Marco Fogagnolo, Pier Paolo Giovannini, Alessandro Massi and Salvatore Pacifico
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB06480K, Paper

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Benzothiazines and clavaminols on the cover of Issue 23

The article from Ahmed M. Zaed and Andrew Sutherland reporting the first total synthesis of clavaminol A, C and H features on the front cover of Issue 23.  Clavaminols are 2-amino-3-alkanols recently isolated from the Mediterranean ascidian Clavelina phlegraea (see cover) and have an unusual stereochemistry of (2R,3S).  Despite this they still show some cytotoxic activity.

Total synthesis of clavaminol A, C and H
Ahmed M. Zaed and Andrew Sutherland
DOI: 10.1039/C1OB06060K


On the inside front cover is work from Michael Harmata and coworkers on the synthesis of benzothiazines for use as fluorescent sensors.  The fluorescent 7-amino-2,1-benzothiazines were prepared using the palladium-catalyzed reaction of 4-amino-2-chlorobenzaldehydes with a sulfoximine or the reaction of 7-fluoro-2,1-benzothiazines with amines.

Benzothiazines in organic synthesis. Synthesis of fluorescent 7-amino-2,1-benzothiazines
Nattawut Yongpruksa, Siddharth Pandey, Gary A. Baker and Michael Harmata
DOI: 10.1039/C1OB06051A

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