Author Archive

HOT – Synthesis of helically twisted [1 + 1]macrocycles

Synthesis of helically twisted [1 + 1]macrocycles assisted by amidinium–carboxylate salt bridges and control of their chiroptical properties

Over the past few decades a lot of interest has been given to macrocycles with a twisted structure that has a preferred direction and show an optical chirality due to their possible uses in many areas such as in materials for chiral recognition.

In this HOT paper Eiji Yashima and colleagues from Nagoya University report the design and synthesis of three helically twisted [1 + 1]macrocycles, whose chirality can be controlled by acid–base interactions and zinc coordination.

Yashima et al. connect the twisted [1 + 1]macrocycles using via o-, m-, and p-linkages and use chiral amidinium–carboxylate salt bridges as a versatile structural motif to control the twisting motion of the macrocycles.

Find out all of the details of this study by downloading this paper. It’s free to access for 4 weeks.

Synthesis of helically twisted [1 + 1]macrocycles assisted by amidinium–carboxylate salt bridges and control of their chiroptical properties
Yuji Nakatani, Yoshio Furusho and Eiji Yashima
DOI: 10.1039/C2OB27054D

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23rd International Symposium: Synthesis in Organic Chemistry – deadline fast approaching

23rd International Symposium: Synthesis in Organic Chemistry

The deadline for submitting poster abstracts for the 23rd International Symposium: Synthesis in Organic Chemistry is fast approaching – 11 March 2013.

The Synthesis in Organic Chemistry conference is the flagship event of the RSC’s Organic Division. This conference will provide an international showcase for the core area of organic chemistry – synthesis – covering all aspects of contemporary organic synthesis and providing a forum for the ever more exciting methodologies and strategies that continue to emerge.

Don’t miss out – reserve your poster presentation space for a chance to showcase your own work, and register early to take advantage of the £50 saving on the standard fee.

Remember too that there are a limited number of bursaries on offer for students and younger members of the RSC in the early stages of their career – worth £150.

Make sure you take the opportunity to join us to hear outstanding speakers across the many themes of the symposium in an extremely stimulating programme of plenary and keynote lectures.

Check out the event website to find out more – http://rsc.li/os23

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Issue 9 of Organic & Biomolecular Chemistry online now

Issue 9 of Organic & Biomolecular Chemistry is out now. Why not take a break, put your feet up with a can of your favourite drink and browse all the great content.

Aliphatic C–H activation with aluminium trichloride–acetyl chloride: expanding the scope of the Baddeley reaction for the functionalisation of saturated hydrocarbonsThis week’s front cover highlights the work of Simon E. Lewis and colleagues at the University of Bath who demonstrate the applicability of Baddeley’s “aliphatic Friedel–Crafts” procedure to a range of saturated hydrocarbon substrates, and discuss its mechanism with the aid of DFT modelling data.

Aliphatic C–H activation with aluminium trichloride–acetyl chloride: expanding the scope of the Baddeley reaction for the functionalisation of saturated hydrocarbons
Catherine L. Lyall, Mario Uosis-Martin, John P. Lowe, Mary F. Mahon, G. Dan Pantoş and Simon E. Lewis
DOI: 10.1039/C2OB26765A

Benzofuran and indole synthesis via Cu(I)-catalyzed coupling of N-tosylhydrazone and o-hydroxy or o-amino phenylacetyleneOn the inside front cover is the work of Lei Zhou and co-workers at Sun Yat-Sen University who describe a general synthesis of 2-substituted benzofurans and indoles through a CuBr-catalyzed coupling–allenylation–cyclization sequence.

Benzofuran and indole synthesis via Cu(I)-catalyzed coupling of N-tosylhydrazone and o-hydroxy or o-amino phenylacetylene
Tiebo Xiao, Xichang Dong and Lei Zhou
DOI: 10.1039/C2OB26867A

Both articles can be read for free for the next 6 weeks!


Inside this issue: 1 Perspective, 6 Communications, 12 Papers.

HOT Communication: An organocatalytic asymmetric double Michael cascade reaction of unsaturated ketones and unsaturated pyrazolones: highly efficient synthesis of spiropyrazolone derivatives

HOT Communication: A sterically demanding organo-superbase avoids decomposition of a naked trifluoromethyl carbanion directly generated from fluoroform

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Complex structures from simple building blocks

Host–guest complexation driven dynamic supramolecular self-assembly - reversible multidimensional transformation from 0D to 3D upon concentration changesIn this HOT communication, Yanli Zhao and co-workers from Nanyang Technological University report the construction of a series of dynamic supramolecular self-assemblies based on covalently linked pillar[5]arene trimers. These trimers have three binding sites, each capable of interacting with a bivilogen bipyridinium functionality. In solution these molecules assemble into complex structures.

Zhao et al. use techniques including dynamic light scattering, scanning electron microscopy and transmission electron microscopy to permit the detailed examination of these elegant supramolecular assemblies.

Acetone mixtures of the two components produce small building blocks at concentrations of 0.5 mM, with expanding aggregates rolling into hollow nanospheres when concentrations approach 1 mM. Beyond this concentration large flat layers are created, which stack at concentrations in excess of 2 mM. In essence the system demonstrates a reversible multidimensional transformation from 0D to 3D, and is an example of controlled dynamic self-assembly.  This represents a novel method for developing new functional materials with a switchable morphology control.

Host–guest complexation driven dynamic supramolecular self-assembly
Huacheng Zhang, Kim Truc Nguyen, Xing Ma, Hong Yan, Junfei Guo, Liangliang Zhu and Yanli Zhao
DOI: 10.1039/C2OB27340C

Free to access for 4 weeks

Published on behalf of Steve Moore, Organic & Biomolecular Chemistry web science writer.

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Organic & Biomolecular Chemistry Issue 8 online now

Issue 8 of Organic & Biomolecular Chemistry has landed and has brought clouds of chemistry along with it.

OBC issue 8 front cover with clouds, rainbows & biotinylated MRI contrast agentsThe front cover highlights the work of Goran Angelovski and colleagues who report the preparation and characterization of two novel macrocyclic gadolinium pH sensitive smart contrast agents appended with a phosphonate pendant arm and either an aliphatic or aromatic linker.

Synthesis and characterization of pH-sensitive, biotinylated MRI contrast agents and their conjugates with avidin
Sandip M. Vibhute, Jörn Engelmann, Tatjana Verbić, Martin E. Maier, Nikos K. Logothetis and Goran Angelovski
DOI: 10.1039/C2OB26555A

OBC inside cover issue 8: E pluribus unum: isolation, structure determination, network analysis and DFT studies of a single metastable structure from a shapeshifting mixture of 852 bullvalene structural isomersOn the inside cover is the HOT article by Maggie He and Jeffrey W. Bode, which we have previously blogged about, highlighting their efforts in isolating a single bullvalene structure from a dynamic mixture of 852 isomers and their computational & network mapping investigations.

E pluribus unum: isolation, structure determination, network analysis and DFT studies of a single metastable structure from a shapeshifting mixture of 852 bullvalene structural isomers
Maggie He and Jeffrey W. Bode
DOI: 10.1039/C2OB26954F

Both of these cover articles are free to access for 6 weeks.

Also in this week’s issue: 1 Emerging area review, 3 Communications & 14 Articles.

Download the issue today!

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Cascading to spiropyrazolones

Researchers in China have developed a simple and effective way to construct spiropyrazolones, stereochemically complex and challenging structural motifs found in many biologically active molecules.

An organocatalytic asymmetric double Michael cascade reaction of unsaturated ketones and unsaturated pyrazolones: highly efficient synthesis of spiropyrazolone derivatives
Jinyan Liang, Qiao Chen, Luping Liu, Xianxing Jiang and Rui Wang
DOI: 10.1039/C2OB27095A

An organocatalytic asymmetric double Michael cascade reaction of unsaturated ketones and unsaturated pyrazolones: highly efficient synthesis of spiropyrazolone derivativesSpirocyclic structures are bicyclic systems where the two rings are connected through a single atom, usually a quaternary carbon. Due to their complex three-dimensional architecture, they are important molecular subunits in organic chemistry. They can be very difficult to assemble, especially in an asymmetric and atom-economic fashion.

3-Pyrazolones are privileged structures and molecules that contain them have been found to possess a huge range of useful biological effects such as antibiotic and anti-tumour properties. In addition to their marked medicinal potential, they have also found use as dyes and anti-corrosives.

For these reasons, methods for the construction of pyrazolone derivatives have attracted intense interest from organic chemists in recent years. The synthesis of optically active pyrazolones, including spiropyrazolones, is particularly challenging with only a handful of syntheses reported in the current literature.

Professor Rui Wang, of the State Key Laboratory of Applied Organic Chemistry, Lanzhou University in China and his research group have been looking into new ways to make spirocyclic compounds, using organocatalytic cascade reactions.

In their latest HOT PAPER, they turn their attention to the construction of spiropyrazolones. A very elegant organocatalytic double Michael cascade reaction between unsaturated ketones and unsaturated pyrazolones yields the desired spiropyrazolone core structure in excellent diastereo- and enantioselectivities.

This reaction provides rapid entry into stereochemically complex spiropyrazolone derivatives and will no doubt prove useful in the manufacture of future medicines and materials.

Published on behalf of Annabella Newton, Organic & Biomolecular Chemistry web science writer.

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Organic & Biomolecular Chemistry issue 7 out now

Welcome to this week’s issue of Organic & Biomolecular Chemistry!

Front cover of Organic & Biomolecular Chemistry issue 7 2013On the front cover:

M. Cepeda and co-workers explore the solution phase behaviour of β-cyclodextrin/alkyltrimethylammonium bromide mixtures, varying the surfactant alkyl chain length from hexyl (C6) to octadecyl (C18).

Competition between surfactant micellization and complexation by cyclodextrin
M. Cepeda, R. Daviña, L. García-Río, M. Parajó, P. Rodríguez-Dafonte and M. Pessêgo
DOI: 10.1039/C2OB26318A

Inside cover of Organic & Biomolecular Chemistry issue 7 2013On the inside cover:

Jasmin Mecinović and colleagues describe how hydroxylamine acts as an oxygen nucleophile in the substitution reaction with benzothiazole-2-sulfonamides in aqueous media.

Hydroxylamine as an oxygen nucleophile: substitution of sulfonamide by a hydroxyl group in benzothiazole-2-sulfonamides
Jos J. A. G. Kamps, Roman Belle and Jasmin Mecinović
DOI: 10.1039/C2OB26929E

Don’t forget, both of these cover articles are free to access for the next 6 weeks!

Get your hands on the rest of the great content in this issue HERE, and why not have a look at some of the latest published articles not yet in an issue.

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Flow synthesis for anticancer drug

The flow-based route required minimal manual intervention and was achieved despite poor solubility of many reaction components

UK chemists have used a combination of flow chemistry methods with solid-supported scavengers and reagents to synthesise the active pharmaceutical ingredient, imatinib, of the anticancer drug Gleevec. The method avoids the need for any manual handling of intermediates and allows the drug to be synthesised in high purity in less than a day.

Gleevec, developed by Novartis, is a tyrosine kinase inhibitor used for the treatment of chronic myeloid leukaemia and gastrointestinal stromal tumours. The drug molecule represents a particularly challenging target for flow chemistry because of the low solubility of many of the reaction components required for its synthesis. The team devised a new synthesis route that prevents the equipment blockages from product precipitation and avoids many of the labour and time intensive practices of traditional batch-based preparation.

The work proved to be a challenge. Steve Ley, at the University of Cambridge, who led the team, says that along the way, they ‘met some considerable obstacles and dead ends’. He remarks that ‘in order to overcome the need to change solvents between some of the reaction stages, we had to invent a new in-line evaporator, which served us well in this and in later synthesis studies’.

Unlike the conventional industrial synthesis of Gleevec, this newly developed route couples molecular fragments in a modular approach. Thomas Wirth, who works on microreactor technology at Cardiff University, UK, remarks that ‘although not designed to compete with the industrial synthesis, the modular approach allows an easy variation of building blocks for the efficient and rapid generation of Gleevec analogues for screening purposes’.

A total of nine analogues were synthesised using the final equipment set-up, which were then screened for anticancer activity. The findings revealed that the piperazine group in the drug molecule plays a role in receptor binding, rather than simply acting as a solubilising group as previously thought.

Ley’s team is now working to combine the synthesis and screening to provide information on products rapidly, as well as extending their approach to new functional materials.

Read the Organic & Biomolecular Chemistry paper, for free for 4 weeks here:

An expeditious synthesis of imatinib and analogues utilising flow chemistry methods
Mark D. Hopkin, Ian R. Baxendale and Steven V. Ley
Org. Biomol. Chem.
DOI: 10.1039/C2OB27002A

Story first published in Chemistry World.

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Inside Organic & Biomolecular Chemistry issue 6

This week in Organic & Biomolecular Chemistry we are bringing you: 1 Emerging Area review, 4 Communications and 18 articles full of interesting chemistry. Visit the issue and get it all!

On the front cover:
Andreea R. Schmitzer and coworkers present the first example of a benzimidazolium-based artificial transmembrane chloride transporter and a synthetic calcium ionophore that can regulate intracellular calcium concentrations in bacteria.

Benzimidazolium-based synthetic chloride and calcium transporters in bacterial membranes
Claude-Rosny Elie, Audrey Hébert, Mathieu Charbonneau, Adam Haiun and Andreea R. Schmitzer
DOI: 10.1039/C2OB26966J

On the inside cover:
Noriho Kamiya and colleagues at Kyushu University assess how the spatial arrangement of the avidin–biotin interaction between protein building blocks affects the formation of a protein supramolecular complex.

Protein supramolecular complex formation by site-specific avidin–biotin interactions
Yutaro Mori, Rie Wakabayashi, Masahiro Goto and Noriho Kamiya
DOI: 10.1039/C2OB26625C

Go to the issue now…..

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Introducing Organic & Biomolecular Chemistry Associate Editor Professor Margaret Brimble

The Editorial team are very pleased to announce that Professor Margaret Brimble is now an Associate Editor for Organic & Biomolecular Chemistry.

Margaret Brimble holds the Chair of Organic and Medicinal Chemistry at the University of Auckland, is Past-President of the International Society for Heterocyclic Chemistry, Chair of the Physical Sciences Panel of the NZ Marsden Fund and a Principal Investigator in the Maurice Wilkins Centre for Molecular Biodiscovery.

Originally from Auckland, Margaret received a BSc and MSc (Hons) in Chemistry from the University of Auckland and a PhD in organic chemistry at the University of Southampton. In 2004, she won the Novartis Chemistry Award and the James Cook Research Fellowship from the Royal Society of New Zealand and in 2005, she was appointed a Member of the New Zealand Order of Merit (Queen’s Honour) for her service to science. She is a Fellow of the Royal Society of New Zealand, a Fellow of the Royal Society of Chemistry, a Fellow of the Royal Australian Chemical Institute and a Fellow of the New Zealand Institute of Chemistry.

We took this opportunity to ask Margaret a few questions:

•    What inspired you to become a chemist?
The creativity associated with making new molecules for the first time.

•    What exciting projects are you working on at the moment?
The synthesis of some really interesting antimicrobial glycopeptides and the synthesis of complex natural products with anticancer activity.

•    You have won a number of awards since the start of your career, including the Rutherford Medal of the Royal Society of New Zealand last year. What is the key to your success?
To do total synthesis of natural products you have to be persistent and work hard. You have to accept that 90% of what you do will not work. I believe that nothing worth doing comes easily. I am therefore motivated by the “bigger picture” and have long term goals having faith that down the track the quality of our science will be recognized. The Rutherford Medal from The Royal Society of New Zealand is awarded for long term contributions to science and technology in New Zealand so this success resulted from many years of hard work with my research team.

•    What scientific discovery would you most like to have been responsible for?
We have a drug candidate NNZ2566 that is in phase 2b clinical trial for traumatic brain injury. We provided the medicinal chemistry expertise for Neuren Pharmaceuticals to develop this synthetic drug candidate. I really hope NNZ2566 makes it to the market.

•    You have recently become an Associate Editor for Organic & Biomolecular Chemistry. What are you looking forward to most about your new role?
I am looking forward to interacting with the synthetic community more and learning more about the chemistry people are doing. The world of synthesis is vast and it is hard to keep up with what everyone is doing.

•    What advice would you give to the students who will be the next generation of scientists?
I tell my young students to do the science you like doing. I also tell them to stick to their science and not get distracted.

•   What would you be if you weren’t a scientist?
I have thought about this often but actually still can’t think about anything better than being a synthetic organic chemist! We get to interact with lots of other scientists and have fun making new molecules for a range of different exciting applications – mainly for drug discovery and as new materials.

Margaret’s recent articles include:
The Kulinkovich hydroxycyclopropanation reaction in natural product synthesis
Org. Biomol. Chem., 2012,10, 7649-7665

Enantioselective synthesis of C-linked spiroacetal-triazoles as privileged natural product-like scaffolds
Org. Biomol. Chem., 2012,10, 5993-6002

Synthesis of glycosylated 5-hydroxylysine, an important amino acid present in collagen-like proteins such as adiponectin
Org. Biomol. Chem., 2012,10, 1137-1144

If you would like to submit an article to OBC, to be handled by Margaret, you can do so here on our submissions platform.

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