Archive for September, 2011

Self-cleaving DNAzymes on the cover of Issue 20

On the cover of this month’s issue we have an article from David M. Perrin and colleagues from the University of British Columbia, Canada.

In order to expand the repertoire of side chain functionality in DNAzymes Perrin and coworkers have explored the use of the phenol group, which is characteristic of the tyrosine side chain found in many active sites of protein enzymes. They have used a phenol-modified 2′-deoxyuridine triphosphate to produce a modified DNA library, which was then used to select DNAzymes capable of self cleaving in the presence of Mg2+ and Zn2+.  The most active DNAzyme, Dz11-17PheO, has an activity of 0.2 min-1.

A divalent metal-dependent self-cleaving DNAzyme with a tyrosine side chain
Curtis H. Lam, Christopher J. Hipolito, Marcel Hollenstein and David M. Perrin
Org. Biomol. Chem., 2011,
DOI: 10.1039/C1OB05359K, Paper

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Two new Associate Editors for OBC

We are delighted to announce the appointment of two new Associate Editors, Professor Jin-Quan Yu and Professor Andrei Yudin, to handle manuscripts for OBC.

Professor Jin-Quan Yu has worked at the Scripps Research Institute since July 2007, where his research centres around the discovery of novel reactions based on C-H activation.  Prior to this he held an Assistant Professorship at Brandeis University and has also worked at the University of Cambridge where he received his PhD under the supervision of Professor Jonathan B. Spencer.

Jin-Quan Yu has received numerous awards throughout his career, most recently the 2012 Mukaiyama Award, the 2012 Arthur C. Cope Scholar Award, and the 2011 Novartis Early Career Award. He has authored over 85 publications to date, many of which have been highlighted in the scientific press.

Professor Andrei Yudin obtained his B.Sc. degree at Moscow State University and his Ph.D. degree at the University of Southern California under the direction of Professors G. K. Surya Prakash and George A. Olah. He subsequently took up a postdoctoral position in the laboratory of Professor K. Barry Sharpless at the Scripps Research Institute. In 1998, he started his independent career at the University of Toronto. He received early tenure, becoming an Associate Professor in 2002, and received an early promotion to the rank of a Full Professor in 2007.

Amongst Professor Yudin’s awards are the CSC Award in Combinatorial Chemistry, the 2004 Amgen New Faculty Award, the 2010 CSC Merck-Frosst Therapeutic Center Award, the 2010 Rutherford Medal of the Royal Society of Canada, and the 2011 University of Toronto Inventor of the Year Award.

The appointment of the two Associate Editors to the OBC Board means that authors now have a choice of submission routes when sending their articles to the journal. Using our online submission system, authors can choose for their articles to be handled by either Professor Yu, Professor Yudin (from October), or a Publishing Editor at the Cambridge Editorial office. More details on the submission procedures for OBC can be found in the journal’s guidelines.

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Perspective: heterocycle synthesis via tandem copper cross-coupling reactions

Yunyun Liu and Jie-Ping Wan from Jiangxi Normal University in China review recent research progress in heterocycle syntheses using tandem reactions initiated by copper-catalysed coupling transformations.

Areas they include are:

  • Reactions initiated by C–N coupling
  • Reactions initiated by C–O coupling
  • Reactions initiated by C–S coupling
  • Reactions involving a double C–X coupling process

Our sister journal Chemical Society Reviews has just published a themed issue on cross-coupling reactions – why not take a look?

Tandem reactions initiated by copper-catalyzed cross-coupling: A new strategy towards heterocycle synthesis
Yunyun Liu and Jie-Ping Wan
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB05769C

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Top ten most accessed articles in August

This month sees the following articles in Organic & Biomolecular Chemistry that are in the top ten most accessed:

Efficient and simple zinc-mediated synthesis of 3-amidoindoles
Anahit Pews-Davtyan and Matthias Beller
Org. Biomol. Chem., 2011, 9, 6331-6334
DOI: 10.1039/C1OB05576C

Total synthesis of clavaminol A, C and H
Ahmed M. Zaed and Andrew Sutherland
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB06060K

A synergistic approach to polycyclics via a strategic utilization of Claisen rearrangement and olefin metathesis
Sambasivarao Kotha, Nimita G. Krishna, Somnath Halder and Shilpi Misra
Org. Biomol. Chem., 2011, 9, 5597-5624
DOI: 10.1039/C1OB05413A

Direct enantioselective access to 4-substituted tetrahydroquinolines by catalytic asymmetric transfer hydrogenation of quinolines
Magnus Rueping, Thomas Theissmann, Mirjam Stoeckel and Andrey P. Antonchick
Org. Biomol. Chem., 2011, 9, 6844-6850
DOI: 10.1039/C1OB05870C

Catalytic oxidative cleavage of olefins promoted by osmium tetroxide and hydrogen peroxide
Stewart R. Hart, Daniel C. Whitehead, Benjamin R. Travis and Babak Borhan
Org. Biomol. Chem., 2011, 9, 4741-4744
DOI: 10.1039/C0OB01189D

Irreversible inhibitors and activity-based probes as research tools in chemical glycobiology
Martin D. Witte, Gijsbert A. van der Marel, Johannes M. F. G. Aerts and Herman S. Overkleeft
Org. Biomol. Chem., 2011, 9, 5908-5926
DOI: 10.1039/C1OB05531C

The synthesis of dehydrotryptophan and dehydrotryptophan-containing peptides
Harveen Kaur, Amanda M. Heapy and Margaret A. Brimble
Org. Biomol. Chem., 2011, 9, 5897-5907
DOI: 10.1039/C1OB05777D

Copper-catalyzed reductive coupling of tosylhydrazones with amines: A convenient route to α-branched amines
Abdallah Hamze, Bret Tréguier, Jean-Daniel Brion and Mouâd Alami
Org. Biomol. Chem., 2011, 9, 6200-6204
DOI: 10.1039/C1OB05664F

N-Heterocyclic carbene-catalyzed cascade epoxide-opening and lactonization reaction for the synthesis of dihydropyrone derivatives
Jing Qi, Xingang Xie, Jinmei He, Ling Zhang, Donghui Ma and Xuegong She
Org. Biomol. Chem., 2011, 9, 5948-5950
DOI: 10.1039/C1OB05854A

Palladium-catalyzed C–H acetoxylation of 2-methoxyimino-2-aryl-acetates and acetamides
Liang Wang, Xu-Dong Xia, Wei Guo, Jia-Rong Chen and Wen-Jing Xiao
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB05887H

Why not take a look at the articles today and blog your thoughts and comments below.

Fancy submitting an article to Organic & Biomolecular Chemistry? Then why not submit to us today or alternatively email us your suggestions.

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Emerging Area: the versatility of the Photo-Deyhdro-Diels-Alder reaction

In this concise review article, Pablo Wessig and colleagues at University Potsdam (Germany) highlight the benefits of the Photo-Deyhdro-Diels-Alder (PDDA) reaction as a synthetically interesting and useful photochemical reaction. While often overlooked in the past, the PDDA reaction enables the synthesis of molecules which are often not accessible via the Diels–Alder (DA) or dehydro-Diels–Alder (DDA) reactions, thanks to the large amount of energy generated by the photoactivation of the reactants.

How would you use the PDDA reaction?

From phenylnaphthalenes, N-heterocyclic biaryls and naphthalenophanes, check out its considerable scope in this OBC article!

The photo-dehydro-Diels–Alder (PDDA) reaction
Pablo Wessig, Annika Matthes and Charlotte Pick
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB06066J, Emerging Area

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HOT: Triggering protein assembly using synthetic recognition motifs

While protein assemblies are key to biological processes, their mis-assembly often leads to altered functions such as those found in neurodegenerative diseases. Considerable efforts are ongoing towards the understanding of the assembly processes, either using native or artificial systems.

In this OBC Hot article, Mingming Ma and Dennis Bong at the Ohio State University (Columbus, USA) construct a protein-protein artificial interface and demonstrate that when functionalized with synthetic cyanuric acid and melamine, the streptavidin proteins are able to assemble selectively, based on reversible supramolecular recognition. Such synthetic modules could be used to direct the molecular interactions for the construction of novel biomaterials and functional molecular assemblies.


    Interested in proteins, biomaterials or supramolecular chemistry? This OBC Communication is for you!



Protein assembly directed by synthetic molecular recognition motifs
Mingming Ma and Dennis Bong
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB05998J, Communication

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HOT: colloidal gold functionalised with carbohydrate mimics for selectin binding

Sabine Schlecht and colleagues from the Free University of Berlin have designed a series of sulfated cyclic and acyclic amino alcohols bound to colloidal gold nanoparticles for use as multivalent selectin binding agents.  The carbohydrate mimics were chosen to act as simplified analogs of the sLex unit found in biological selectin ligands, and demonstrated extremely high binding affinities towards L- and P-selectin and no cytotoxicity.

To read the details of this well conducted study download the article – it’s free to access for 4 weeks:

Multivalent interaction and selectivities in selectin binding of functionalized gold colloids decorated with carbohydrate mimetics
Meike Roskamp, Sven Enders, Fabian Pfrengle, Shahla Yekta, Vjekoslav Dekaris, Jens Dernedde, Hans-Ulrich Reissig and Sabine Schlecht
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB05583F

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HOT: β-thiolactones with higher cytotoxic activity than corresponding β-lactones

β-lactones are potentially useful as drugs for several diseases, due to their ability to inhibit key biological functions.  However, their high reactivity in physiologically relevant conditions also renders their half-life very short and limits the potential drug applications.

To combat this David Crich and colleagues at the Institut de Chimie des Substances Naturelles, CNRS, have synthesised a series of β-thiolactone analogs of β-lactones, on the basis that they would have greater persistence in aqueous media without too much loss of reactivity with the intended targets, as compared to β-lactam analogues.  The synthesised β-thiolactones were assayed for cytotoxicity against several human cancer cell lines, where they showed greater activity than the corresponding lactones and lactams.

Interested? The article is free to access for 4 weeks:

Exploring the potential of the β-thiolactones in bioorganic chemistry
Sylvain Aubry, Kaname Sasaki, Laure Eloy, Geneviève Aubert, Pascal Retailleau, Thierry Cresteil and David Crich
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C1OB05967J

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Self-assembled multivesicular structures for peptide-based drug delivery

Arindam Banerjee and collaborators at the Indian Institute of Chemical Biology and Indian Association for the Cultivation of Science in Jadavpur (India) demonstrate the spontaneous formation of hierarchical vesicle-in-vesicle systems from remarkably simple peptides.

These multivesicular structures are stable over a wide pH range (2 to 12) and can encapsulate anticancer drugs and fluorescent dyes, while the release is triggered by biocompatible Ca2+ ions. Combined with a negligible cytotoxicity, these peptide based functional vesicles hold future promise as biocompatible delivery vehicles.

This article has been selected as HOT and will be free to access for the next 4 weeks. Why not read it now!



Self-assembling dipeptide-based nontoxic vesicles as carriers for drugs and other biologically important molecules Jishu Naskar, Subhasish Roy, Anindita Joardar, Sumantra Das and Arindam Banerjee
Org. Biomol. Chem., 2011, 9, 6610-6615
DOI: 10.1039/C1OB05757J, Paper

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Fluorinated cyclic amino acids on the cover of Issue 19

On the cover of Issue 19 is an article from Ference Fülöp and colleagues from the University of Szeged and the University of Valencia.

They have developed a synthetic route to fluorinated β-aminocyclohexene or cyclohexane esters from a bicyclic β-lactam via selective hydroxylation and hydroxy–fluorine exchange.  Despite the potential of fluorinated cyclic amino acids for medicinal chemistry applications, only a handle of other fluorinated derivatives have been reported so far.

This article is part of a forthcoming Organic & Biomolecular Chemistry web theme issue on Foldamer Chemistry – check back soon for related articles.

Regio- and diastereoselective fluorination of alicyclic β-amino acids
Loránd Kiss, Enikő Forró, Santos Fustero and Ferenc Fülöp
Org. Biomol. Chem., 2011, 9, 6528-6534, Advance Article
DOI: 10.1039/C1OB05648D

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