Archive for August, 2016

Bacteria go on a DIET

Probably not the type of diet you are thinking of. It has something to do with food, though. I am talking about the transfer mechanisms some bacteria use to share metabolites between them, and also with bacteria of different species. In this review published in Environmental Science: Processes & Impacts, two researchers from North Carolina analyse the latest discoveries in this field, specifically in mechanisms known as DIET: “direct interspecies electron transfer”.

Scientists discovered DIET not a decade ago. Before that, only conventional diffusion models were known: an organism generated an excess of certain metabolite, released it to the surrounding media and was consumed by a second organism. This is called “mediated interspecies electron transfer” (MIET).

DIET, however, is more efficient. Instead of releasing the metabolites around, bacteria use structures that allow them to transfer chemical substances directly to other cells. These structures, usually filamentous pili full of conductive cytochromes, act as nanowires that connect bacteria to one another. However, because DIET is a form of electron transfer, sometimes proteins are not needed at all and actual electric cables may be used. When pili and cytochromes are removed in genetically engineered bacteria, they can use metal, metal oxides (such as magnetite) or activated carbon as connections. Sometimes bacteria prefer this cables to their own traditional methods: in some experiments, scientists showed that bacteria will rather connect to carbon than to other cells, probably due to the higher electric conductivity.

Nowadays we use multicellular bacterial communities in a wide variety of industrial systems from sewage treatment to energy production. Understanding how DIET interactions work is key to improve the effectiveness of these processes and will allow us to have a better control. Who knows, maybe some day DIET will lead into building intelligent bacterial circuits, the same way years ago silicon allowed us to create microchips.

Read the Critical Review for free* today:

Hardwiring microbes via direct interspecies electron transfer: mechanisms and applications
Qiwen Cheng and Douglas F. Call
Environ. Sci.: Processes Impacts, 2016,18, 968-980
DOI: 10.1039/C6EM00219F

*Access is free until 23/09/2016 through a registered publishing personal account.

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Closing the window on air pollution

Graphical abstractSwitching off fans and closing car windows can minimise drivers’ exposure to harmful particles.

Sitting in traffic is bad for your lungs, but closing your car windows and switching off the fans can minimise the amount of micro-size pollution particles you breathe, scientists from the UK found.
Air pollution is a major health risk. The World Health Organization estimates that it caused 3.7 million premature deaths in 2012. Last year, a group led by Prashant Kumar from the University of Surrey, UK, showed that drivers stuck at traffic lights are exposed to 29 times more harmful pollution particles than those driving in free flowing traffic.

Switching off fans and closing car windows can minimise drivers’ exposure to harmful particles
Sitting in traffic is bad for your lungs, but closing your car windows and switching off the fans can minimise the amount of micro-size pollution particles you breathe, scientists from the UK found.
Air pollution is a major health risk. The World Health Organization estimates that it caused 3.7 million premature deaths in 2012. Last year, a group led by Prashant Kumar from the University of Surrey, UK, showed that drivers stuck at traffic lights are exposed to 29 times more harmful pollution particles than those driving in free flowing traffic.

Read the full article in Chemistry World.


Concentration dynamics of coarse and fine particulate matter at and around signalised traffic intersections
Prashant Kumar and Anju Goel
Environ. Sci.: Processes Impacts, 2016, Advance Article
DOI: 10.1039/C6EM00215C, Paper

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Ideas towards the eradication of diarrheal diseases in poor countries

Diarrheal disease is the second leading cause of death in children under five years, killing almost 800,000 children every year. A combination of different causes, such as poor hygiene conditions and malnutrition, make low and middle income countries more susceptible to the disease. In recent years, there has been a successful campaign to decrease this high mortality rate, from almost 2.5 million deaths in the year 2000, representing a decrease of 70 to 80%. However, the amount of diarrheal episodes, or morbidity, is still very high. Taking into consideration the problems in decreasing the morbidity, Timothy R. Julian brings a perspective emphasizing the interventions that would be most effective at reducing the burden of diarrheal disease.

The vast majority of diarrheal episodes is caused by pathogens, notably rotavirus, norovirus, E. coli, Shighella spp and Cryptosporidium spp. These present different dose-response relationship, with some being more likely to infect a child after exposure (Figure 1).  According to these estimates, a great decrease in exposure is often need to reduce the probability of infection and therefore interventions should focus on minimising children exposure to the pathogens.

Figure 1. Median estimates for dose-relationship for common diarrheal pathogens.

As data regarding quantitative pathogen and human-environment interaction data is sparse, scientists often use proxy measures, like human feces equivalents, to estimate exposure risks. For example, probability of infection is calculated using the HID50 (the pathogen dose at which there is a 50% likelihood of infection) and the shedding rate (eq. 1). Estimates for environmental contamination is also presented (eq. 2).

Diarrheal disease pathogens – E. coli organisms are usually divided into two categories: enterotoxigenic (ETEC) and enteropathogenic (EPEC). Infectivity is usually strain specific and it is in general relatively low, with HID50s ranging from 105 to 108 cells for ETEC and 105 to 107 cells for EPEC, corresponding to 0.001 to 10 g and 0.01 to 1 g of feces of an infected person, respectively. Despite being similar to E. Coli, Shigella spp are more infective, presenting an HID50 of around 103 cells, which corresponds to 0.01 to 1 g of infected feces. The protozoal pathogens Cryptosporidium spp are highly infective, with an HID50 as low as 9 oocysts (10-1 to 10-5 of the amount of feces shed in a day during infection). With high shedding and high infectivity rates, rotavirus is arguably the most important enteric pathogen: the HID50 is 6 focus-forming units (FFU), equivalent to only 10-3 to 10-9 g feces of an infected person. Different from rotavirus (endemic), norovirus is characterised by its role in epidemic outbreaks. Its HID50 is 1320 genome equivalents for susceptible people (some people are naturally resistant), which corresponds to 10-4 to 10-5 g of infected feces.

Environmental transmission – The routes of transmission can be explained using the F-diagram (Figure 2). The diagram connects six environmental reservoirs for the pathogens. Interactions between infected feces and these reservoirs (through human, animal and natural processes) and subsequent interactions between the reservoirs and susceptible people result in infections.

Figure 2. The F-diagram showing the complex transmission pathways of diarrheal diseases.

With 23% of the global population using unsafe water, this reservoir is arguably the most important route of exposure to the most important pathogens (all of them have been detected in stored drinking water in LMICs), especially for rotavirus, norovirus and Cryptosporidium spp, due to the high infectivity of these.

Food is also an efficient transmission pathway, especially for bacterial pathogens that can grow in these environments. Fecal bacterial is frequently detected on hands on LMICs, posing both a direct and indirect route of transmission. Flies are important due to their interactions with both feces and food. Fields (referring to crops and soil) are primarily an intermediate reservoir, but also play a role in copraphagy and geophagy in some regions. Finally, fomites are extensively contaminated with infected feces in LMICs, contributing to the ubiquity of the pathogens throughout a household and other environments.

Perspective – Having in mind the multiple factors involved in the transmission of diarrheal pathogens (for example, etiology, infectivity, fecal shedding rate, reservoirs, human-reservoirs-nature interactions and sanitation) and that these are most likely region/site/country specific, it is important to combine interventions to interrupt simultaneously all the relevant transmission routes. For bacterial agents, reducing geophagy, prevention of growth in food and fly control could be effective in reducing exposure and therefore infection. Cryptosporidium spp and norovirus are more difficult to control due to high shedding and infectivity rates. A combination of fecal management, water and hygiene control and limited contact with infected people would be necessary. Unfortunately, rotavirus is almost impossible to control, with vaccination, nutrition and health care being the current focus to delay infection until after the first year of the child, when the mortality is reduced.

With multiple and specific interventions is therefore possible to successfully achieve great reductions in the burden of diarrheal diseases in LMICs and maybe reach eradication in the future.

To read the full Open Access article, click the link below:
Environmental transmission of diarrheal pathogens in low and middle income countries
Timothy R. Julian
Environ. Sci.: Processes Impacts, 2016,18, 944-955
DOI: 10.1039/C6EM00222F

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About the webwriter

Luiza Cruz is a PhD student in the Barrett Group at Imperial College London. Her work is towards the development of new medicines, using medicinal and natural products chemistry.

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Emerging Investigator Series for Environmental Science: Processes & Impacts

Desiree Plata (Yale University) will be overseeing this series and reviewing applications.

Some of the best work in the field of Environmental Science being conducted by early-career researchers was showcased in the Emerging Investigators Issue of Environmental Science: Processes & Impacts. As highlighted in the Editorial introducing this issue, starting in 2017, we will be running an Emerging Investigator Series, similar to the successful series of our sister journal Environmental Science: Water Research & Technology (http://rsc.li/emerging-series). This continuous format is designed to allow more flexibility for contributors to participate in the venture without the restriction of submission deadlines and benefit the Environmental Science community through continued exposure to the exciting work being done by its early-career members.

With the introduction of this new Series, we are delighted to announce that Desiree Plata will be taking on the role of Emerging Investigator Series Editor. Desiree has been an active member of the Environmental Science: Processes & Impacts Editorial Board for over a year and will be overseeing this Series and reviewing applications going forward.

Desiree adds: “I am looking forward to working with my colleagues to build a rigorous series that highlights the most exciting advances in their research. In addition, I hope that the Series will inspire future research directions by identifying needs and synergies in the cross-cutting intellectual spaces we are defining as a community.”

To be eligible for the new Emerging Investigator Series you will need to have completed your PhD (or equivalent degree) within the last 10 years and have an independent career. If you are interested in contributing to the Series please contact the Editorial Office (espi-rsc@rsc.org) and provide the following information:

  • Your up-to-date CV (no longer than 2 pages), which should include a summary of education and career, a list of relevant publications, any notable awards, honours or professional activities in the field, and a website URL if relevant;
  • A synopsis of the article intended to be submitted to the Series, including a tentative submission date. This can be an original research or review article. Please visit the journal website for more details on article types.All articles published as part of the Emerging Investigator Series will be widely promoted and will be collated together on the Journal website. Please note that articles submitted to the journal for the Series will undergo the usual peer-review process.

We hope you enjoy reading the final Emerging Investigators issue in its current form; please contact the Editorial Office (espi-rsc@rsc.org) if you are interested to contribute to the Emerging Investigators Series.

Keep up to date with the latest papers added to this Series on our twitter feed (@EnvSciRSC) with the hashtags #EmergingInvestigators #ESPI

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