Author Archive

Editor’s Collection: Meet the authors – Dimakos & Taylor

Let’s meet our researchers:

Victoria Dimakos was born in Toronto. In 2015, she received her undergraduate degree in Chemistry and Art History at the University of Toronto. As an undergraduate, she was introduced to carbohydrate chemistry in the laboratories of Profs Mark Nitz and Mark S. Taylor. She began her graduate studies in 2015 at the University of Toronto in the Taylor group, where her research has focused on the development of site-selective functionalizations of carbohydrate derivatives using organoboron reagents. She has completed her PhD and is now conducting postdoctoral research with Prof. Stephen Newman at the University of Ottawa.

Mark S. Taylor was born in Oxford, England and grew up in Toronto. He received his B.Sc. in chemistry in 2000 from the University of Toronto. After graduate studies at Harvard University under the supervision of Prof. Eric Jacobsen, he took up a postdoctoral fellowship at MIT, working in the research group of Prof. Tim Swager. In 2007, he returned to the Department of Chemistry at the University of Toronto, where he is Professor and Canada Research Chair in Molecular Recognition and Catalysis.

What inspired you to write this Review article?

Our interest in O-arylation of carbohydrates arose by chance: Victoria observed a small amount of O-arylation during an unsuccessful attempt to conduct a organoboron-catalyzed oxidation of a carbohydrate. We recognized that this transformation might have value because methods for direct arylation of OH groups in carbohydrates are relatively rare. We wrote the review article to highlight recent discoveries from groups around the globe that have led to new methods for O-arylation of carbohydrates, and to bring attention to the issues and opportunities associated with this transformation.

What primary research are you carrying out in the area?

My group is broadly interested in developing site-selective transformations of carbohydrates, with a focus on catalytic processes. We have used organoboron catalysts and reagents for selective functionalizations of OH groups in sugars, and have recently expanded this program to include selective formation of carbon-centred radicals by hydrogen atom abstraction.

What are your thoughts on the future of this research field?

One dimension of the work described in this review article involves developing new approaches for the preparation of O-aryl glycosides, compounds with established applications in medicinal chemistry and biochemistry. These new approaches may offer complementary advantages to the more established methods. On the other hand, the products of O-arylation at non-anomeric OH groups have not been explored extensively. Considering that aryl groups are important pharmacophores, the ability to append them to carbohydrates in a direct and efficient way may create new opportunities in medicinal chemistry and other fields. Several of the discoveries highlighted in the Review have taken place at the nexus of the carbohydrate chemistry and transition metal catalysis fields, and it is likely that more exciting discoveries will be reported along this line in the future.

 

Read the full article: Recent advances in the direct O-arylation of carbohydrates

See the other articles showcased in this month’s Editor’s Collection

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Editor’s Collection: Meet the author – Brett N. Hemric

Introducing Dr Brett N. Hemric:

I grew up in a small town in Oklahoma, where my father was a science professor. Because of this, I was playing with model kits and exploring the lab at an early age. After attending Liberty University and achieving a B.S. in Biochemistry and Molecular Biology in 2013, I attended Duke University and worked with Dr. Qiu Wang, earning a Ph.D. in Organic Chemistry in 2018. I am currently a Postdoctoral Research Associate with Prof. Scott Denmark at the University of Illinois at Urbana-Champaign and I aspire to move into an assistant professor position in the future.

What inspired you to write this Review article?

I have always enjoyed alkene reactions ever since learning about them in undergraduate organic chemistry. There is something fascinating about the inherent “built-in” reactivity of carbon-carbon pi bonds toward electrophiles. In writing this review, I wanted to provide a comprehensive resource for all of the current work on amino oxygenation of alkenes, alkynes, and allenes, since this area has seen a renaissance in recent years after the seminal Sharpless amino hydroxylation work that begun in the 1970s.

What primary research are you carrying out in the area?

My doctoral work focused on alkene amino oxygenation using electrophilic nitrogen species and copper catalysis. We were able to produce a number of methods, both intramolecular and intermolecular, for the amino oxygenation of alkenes and 1,3-dienes. I am currently working in the laboratory of Dr. Scott Denmark and am also working on alkene difunctionalization, so be on the lookout for that soon!

What are your thoughts on the future of this research field?

Although there are a large number of methods in the alkene amino oxygenation literature, future methods will need to accomplish high levels of enantioselectivity on a broad range of substrates, in addition to the diastereo- and regioselectivity already present in many methods. Within the arena of alkyne and allene amino oxygenation, there are significantly fewer intentional research programs toward their functionalization and much more unexplored space for ambitious scientists to devote their efforts towards.

 

Read the full article: Beyond osmium: progress in 1,2-aminooxygenation of alkenes, 1,3-dienes, alkynes,and allenes

See the other articles showcased in this month’s Editor’s Collection

See all the full articles on our publishing platform

 

 

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Editor’s Collection: Santanu Mukherjee

The Organic & Biomolecular Chemistry Editor’s collection is a showcase of some of the best articles published in the journal, hand selected by our Associate Editors and Editorial Board members. For this month’s selection, Associate Editor Professor Santanu Mukherjee has highlighted some of his favorite recent works. Take a look at what he thought of the articles below, and find out more about the research and the researchers behind the papers in our interviews with the authors.

Santanu’s Selection: 

Mannich-type allylic C–H functionalization of enol silyl ethers under photoredox–thiol hybrid catalysis

Tsubasa Nakashima, Kohsuke Ohmatsu and Takashi Ooi

Santanu’s comment: “Silyl enol ethers are nucleophilic at α-position and their reaction with electrophiles results in α‑functionalization of carbonyls. The work described in this communication bypasses this conventional reactivity of silyl enol ethers under photoredox-thiol hybrid catalysis to effect β-functionalization of ketones through allylic C–H functionalization of cyclic and acyclic silyl enol ethers.”

Find out more in our interview with the authors

 

Beyond osmium: progress in 1,2-aminooxygenation of alkenes, 1,3-dienes, alkynes,and allenes

Brett N. Hemric

Santanu’s comment: “1,2-Heterodifunctionalization of olefins is an important synthetic transformation, in which 1,2-amino oxygenation occupies a special place. While osmium-catalyzed aminohydroxylation of olefins is a rather well-established method, a number of other strategies are available for carrying out 1,2-amino oxygenation of olefins, even enantioselectively. This comprehensive review beautifully summarises osmium-free 1,2‑amino oxygenation reactions not only of alkenes, but also of 1,3-dienes, alkynes, and allenes.”

Find out more in our interview with the author

 

Recent advances in the direct O-arylation of carbohydrates

Victoria Dimakos and Mark S. Taylor

Santanu’s comment: “O-Aryl glycosides can be found in a variety of natural products having significant bioactivity. The direct C(sp2)–O bond formation between a (hetero)arene derivative and a hydroxy group of carbohydrates presents an attractive synthetic strategy. Recent developments in this direction are reviewed in this article.”

Find out more in our interview with the authors

 

Tris(pentafluorophenyl)borane Catalyzed C−C and C−heteroatom Bond Formation

Gautam Kumar, Sourav Roy and Indranil Chatterjee

Santanu’s comment: “The recent emergence of tris(pentafluorophenyl)borane (BCF) as Lewis acid catalyst has led to the development of a large number of metal-free transformations. This review highlights the most recent examples of BFC-catalyzed (or co-catalyzed) transformations.”

Find out more in our interview with the authors

 

Meet the Editor:

Santanu Mukherjee, OBC Associate Editor

ORCID: https://orcid.org/0000-0001-9651-6228

Santanu Mukherjee obtained his BSc (Chemistry Honors) from R. K. Mission Residential College, Narendrapur (2000) and MSc (Chemistry) from IIT, Kanpur (2002). After completing his doctoral studies with Professor Albrecht Berkessel at Universität zu Köln in 2006, he worked as a postdoctoral fellow with Professor Benjamin List at Max-Planck Institut für Kohlenforschung in Mülheim an der Ruhr (2006-2008) and subsequently with Professor E. J. Corey at Harvard University (2008-2010). In 2010, he returned to India to join the Department of Organic Chemistry at Indian Institute of Science, Bangalore as an Assistant Professor and was promoted to Associate Professor in 2015. He is a recipient of Thieme Chemistry Journals Award (2011), Indian National Science Academy (INSA) Medal for Young Scientists (2014) and a Fellow of the Royal Society of Chemistry (2018).

His research interests primarily revolve around asymmetric catalysis with particular emphasis on the discovery of new enantioselective transformations. His research group mostly relies on hydrogen bonding, Lewis base and bifunctional catalysis. More recently, he is looking to expand his research activities in the realm of iridium-catalyzed asymmetric allylic substitution reactions.

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Editor’s Collection: Meet the authors – Nakashima, Ohmatsu and Ooi

From left to right: Tsubasa Nakashima, Kohsuke Ohmatsu and Takashi Ooi

Let’s meet the researchers!

Tsubasa Nakashima received his B.S. in 2016 and his M. S. degree in 2018 from Nagoya University under the guidance of Prof. Takashi Ooi. He is currently a Ph.D. student at Nagoya University and recipient of a JSPS Research Fellowship for Young Scientists. He was awarded the Chemical Society of Japan Student Presentation Award (2019).

Kohsuke Ohmatsu received his B.S. in 2003 and his Ph.D. in 2008 from Kyoto University under the supervision of Prof. Keiji Maruoka. He started the research in the Ooi group at Nagoya University as an assistant professor in 2008, became a lecturer in 2013, and was then promoted to an associate professor in 2015. He was awarded the Akasaki Prize (2013), the ITbM research award (2013), the Chemical Society of Japan Award for Young Chemists (2016), the Commendation for Science and Technology by MEXT, the Young Scientists’ Prize (2017), Chemist Award BCA (2020), and Thieme Chemistry Journals Award (2021).

Takashi Ooi received his B.S. in 1989 and his Ph.D. in 1994 from Nagoya University under the guidance of Prof. Hisashi Yamamoto. After postdoctoral work with Prof. Julius Rebek, Jr. (MIT, Cambridge), he joined the group of Prof. Keiji Maruoka in Hokkaido University as an assistant professor in 1995, became a lecturer in 1998, and then moved to Kyoto University as an associate professor in 2001. In 2006, he moved to Nagoya University as a full professor. Since 2013, he has been a principal investigator at the Institute of Transformative Bio-Molecules (WPI-ITbM) in Nagoya University.

What inspired your research in this area?

The characteristic features of radical reactions that have potential for transforming the way of organic synthesis led us to pursue our approach to the design of catalysts for attaining new reactivity and selectivity. Specifically, our recent research on the efficient hydrogen-atom transfer catalysis (ACS Catal. 2020, 10, 2627) is a basis of the present study, and the leading contributions by Prof. MacMillan and coworkers to the development of the photoredox and organic-molecular hybrid catalysis (e.g. J. Am. Chem. Soc. 2015, 137, 8404) greatly inspired us.

What do you personally feel is the most important outcome of your study?

The present study expands the synthetic utility of enol silyl ethers and their analogues, which are readily available, versatile reactants in organic synthesis. The Mannich-type allylic C−H functionalization and subsequent polar reactions of the aminoalkylated enol silyl ethers allows for the rapid access to structurally complex carbonyl compounds.

What directions are you planning to take with your research in future?

We are continuing the studies to expand the scope of the allylic C−H functionalization methodology by exploiting the intrinsic features of enol silyl ethers and/or their radical cations. We will also try to develop regio- or stereoselective variants of this type of transformations.

 

Read the full article: Mannich-type allylic C–H functionalization of enol silyl ethers under photoredox–thiol hybrid catalysis

See the other articles showcased in this month’s Editor’s Collection

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Editor’s Collection: Meet the authors – Kumar, Roy and Chatterjee

From left to right: Indranil Chatterjee, Sourav Roy and Gautam Kumar

Mr. Gautam Kumar obtained his M. Tech (Chemical Science and Technology) degree from DIAT(DU)-DRDO-Pune in 2018. He joined the IC research group under the guidance of Prof. Dr. Indranil Chatterjee in July 2018 at Indian Institute of Technology, Ropar, India as a Ph.D. student. He is working on the methodology developments for organic synthesis.

Mr. Sourav Roy completed his Masters at Bidhannagar Govt. College, Bidhannagar, West Bengal State University in 2017. He joined the IC research group under the guidance of Prof. Dr. Indranil Chatterjee in July 2018 at Indian Institute of Technology, Ropar, India as a Ph.D. student. He is working on the methodology developments in organic synthesis.

Dr. Indranil Chatterjee was born in Kolkata, India in 1983. He obtained his B.Sc. from Calcutta University, India in 2006, before joining IIT Kharagpur for his M.Sc. study. In 2008 he moved to Germany for his Ph.D. study at Westfälische Wilhelms-University Muenster under the guidance of Prof. Dr. Armido Studer. After finishing his Ph.D. study in November 2011, he became a Postdoctoral fellow in the group of Prof. Paolo Melchiorre in ICIQ, Tarragona, Spain. From 2014 to 2016, he was a Post-Doc with Prof. Martin Oestreich at the Technische Universität Berlin. He is currently an Assistant Professor at the Indian Institute of Technology Ropar, India.

What inspired you to write this Review article?

The wondrous reactivity of BCF prompted us to work in this field. The versatile capability of BCF is not only restricted to FLP catalysis but extends as a potential Lewis acid to develop verities of transition-metal-free transformation. Therefore, we thought compiling all recent reports in a single frame would be beneficial to the synthetic chemistry community and to new readers looking to develop innovative synthetic methodologies and do more exploration in this blooming area of catalysis.

What primary research are you carrying out in the area?

We started our journey in the field of BCF catalysis in 2018. We were able to successfully develop“Boron Lewis Acid-Catalyzed Regioselective Hydrothiolation of Conjugated Dienes with Thiols” (ACS Catal. 2019, 9, 12, 11627–11633). This unique and high regioselectivity prompted us to explore various regioselective C−heteroatom bond forming reactions using BCF catalysis as an ongoing project.

What are your thoughts on the future of this research field?

This review collectively highlights the recent development and displays a strong prospective towards a new direction for further discovery and sustainable synthesis in this area. We hope this reactivity can be a potential alternative for transition-metal-based catalysts to discover numerous synthetic protocols in the near future with industrial applications. We expect that BCF chemistry will be explored in various C−H bond functionalization strategies and utilized as a co-catalyst in numerous asymmetric transformations.

 

Read the full article: Tris(pentafluorophenyl)borane Catalyzed C−C and C−heteroatom Bond Formation

See the other articles showcased in this month’s Editor’s Collection

See all the full articles on our publishing platform

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Introducing Organic & Biomolecular Chemistry Editorial Board member Judy I-Chia Wu

 

We are delighted to welcome Professor Judy I-Chia Wu to the Organic & Biomolecular Chemistry Editorial Board!

Judy earned a BS (2004) in Chemistry from Tunghai University, Taiwan, and a PhD (2011) working with Professor Paul Schleyer, at the University of Georgia. In 2015, she began her independent career at the University of Houston, Department of Chemistry. She has received an IUPAC Young Chemist Award, an NSF CAREER Award, and an NIH MIRA award. She was selected as a Sloan Research Fellow in 2020.

Her current research interests span topics in ground and excited-state aromaticity and antiaromaticity, photochemistry, supramolecular chemistry, and enzyme catalysis.

She enjoys long walks with her dog, and writing from a cozy corner.

 

 


See some of Judy’s recent research highlights in this Chemistry World article:

Or find out more by browsing a few of her recent publications:

On the reciprocal relationship between σ-hole bonding and (anti)aromaticity gain in ketocyclopolyenes
Hari Ram Paudel, Lucas José Karas and Judy I-Chia Wu
Org. Biomol. Chem., 2020,18, 5125-5129

Antiaromaticity gain increases the potential for n-type charge transport in hydrogen-bonded π-conjugated cores
Zhili Wen and Judy I-Chia Wu
Chem. Commun., 2020,56, 2008-2011

How does excited-state antiaromaticity affect the acidity strengths of photoacids?
Zhili Wen, Lucas José Karas, Chia-Hua Wu and Judy I-Chia Wu
Chem. Commun., 2020,56, 8380-8383

Why do A·T and G·C self-sort? Hückel aromaticity as a driving force for electronic complementarity in base pairing
Yu Zhang, Chia-Hua Wu and Judy I-Chia Wu
Org. Biomol. Chem., 2019,17, 1881-1885

Superalkali ligands as a building block for aromatic trinuclear Cu(I)–NHC complexes
Rakesh Parida, Subhra Das, Lucas José Karas, Judy I-Chia Wu, Gourisankar Roymahapatra and Santanab Giri
Inorg. Chem. Front., 2019,6, 3336-3344

Mixed-carbene cyclometalated iridium complexes with saturated blue luminescence
Hanah Na, Louise M. Cañada, Zhili Wen, Judy I-Chia Wu and Thomas S. Teets
Chem. Sci., 2019,10, 6254-6260

Azo-triazolide bis-cyclometalated Ir(III) complexes via cyclization of 3-cyanodiarylformazanate ligands
Ge Mu, Zhili Wen, Judy I-Chia Wu and Thomas S. Teets
Dalton Trans., 2020,49, 3775-3785

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Editor’s Collection: Kate Jolliffe

The Organic & Biomolecular Chemistry Editor’s collection is a showcase of some of the best articles published in the journal, hand selected by our Associate Editors and Editorial Board members. For this month’s selection, Associate Editor Kate Jolliffe has highlighted some of her favourite recent works. Take a look at what she thought of the articles below, and find out more about the research and the researchers behind the papers in our interviews with the authors.

Kate’s Selection: 

Rational Design of Small Molecule Fluorescent Probes for Biological Applications

Joomyung V. Jun, David M. Chenoweth and E. James Petersson

Kate’s comment: “New fluorophores are highly sought after for the development of tools for biological applications. This review provides a nice overview of the functional fluorescent probes and the factors effecting their photophysical properties. Importantly it provides general guidelines for the rational design of new fluorophores with tailored photophysical properties for applications in chemical biology.”

Find out more in our interview with the authors

 

One-pot synthesis of porphyrin-based [5]rotaxanes

Pablo Martinez-Bulit, Benjamin H. Wilson and Stephen J. Loeb

Kate’s comment: “The synthesis of mechanically interlocked molecules with high degrees of complexity frequently requires multiple synthetic steps, which limits the ability to explore their functionality. Here, Loeb and co-workers report a clever synthesis of porphyrin containing [5]rotaxanes , in a one-pot reaction, opening the door to the synthesis of a wide range of mechanically locked architectures that can be fine-tuned for specific applications.”

Find out more in our interview with the authors

 

Absolute handedness control of oligoamide double helices by chiral oxazolylaniline induction

Ling Yang, Chunmiao Ma, Brice Kauffmann, Dongyao Lia and Quan Gan

Kate’s comment: “The incorporation of a chiral group at the terminus of an aromatic oligoamide strand has been shown to provide complete chiral control in the self-assembly of synthetic antiparallel double helices from quinoline containing foldamers, opening opportunities for the future exploitation of these materials as chiral sensors or catalysts.”

Find out more in our interview with the authors

 

Facile synthesis of sulfotyrosine-containing α-conotoxins

Changpeng Li and Chunmao He

Kate’s comment: “Tyrosine sulfation is an important post-translational modification that is believed to modulate biological function but is underexplored because of difficulties with both the isolation and synthesis of sulphated peptides. Here, He and Li demonstrate the facile synthesis of sulfated conotoxins by combining the sulfate ester deprotection and folding steps into a one pot procedure. Importantly they show that, in the case of conotoxins, the sulfate ester is not as acid labile as expected.”

Find out more in our interview with the authors

 

Meet the Editor:

Katrina (Kate) Jolliffe received her BSc (Hons) in 1993 and PhD in 1997 from the University of New South Wales. She then held positions at Twente University, The Netherlands; the University of Nottingham, UK and the Australian National University before taking up an Australian Research Council QEII fellowship at The University of Sydney in 2002. In 2007 she became a Senior lecturer at the same institution and was promoted to Associate Professor in 2008 and to full Professor in 2009. She currently holds the position of Payne-Scott Professor at The University of Sydney. She is a Fellow of the Australian Academy of Science and has been awarded the Beckwith (2004), Biota (2006), Birch (2017) and H. G. Smith (2018) medals of the Royal Australian Chemical Institute. Her research interests are in the areas of supramolecular, peptide and organic chemistry, with a focus on the design and synthesis of functional molecules, such as molecular sensors capable of detecting anions in biological environments or cyclic peptides for application in biology and medicine.
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Editor’s Collection: Meet the authors – Yang, Ma, Kauffmann, Li and Gan

Introducing the researchers:

Ling Yang was born in 1991 in Qian Jiang, Hu Bei, China. In 2012 she received her bachelor’s degree in Chemical Engineering and Technology from Hubei University. After that, she obtained her Ph.D. degree in January 2018 under the supervision of Prof. Hua Jiang at the Institute of Chemistry, Chinese Academy of Sciences, working toward the synthesis and the characterization of aryl-triazole foldamer receptors to anion recognition. In 2018/2019, she worked as a postdoctoral fellow at Huazhong University of Science and Technology under the guidance of Prof. Quan Gan.

 

 

Chunmiao Ma was born in Hubei, China. She received her bachelor’s degree in chemistry from China University of Geosciences, Wuhan in 2016. She is now working toward a Ph.D. under the supervision of Prof. Quan Gan at Huazhong University of Science & Technology, working on design, synthesis and characterization of artificial foldamers based on aromatic oligoamides.

 

 

Dr. Brice Kauffmann is Crystallographer and head of IECB’s Biophysical and Structural Chemistry core facility. After a PhD in protein crystallography (2003, University of Nancy I), Brice Kauffmann spent three years at the European Molecular Biology Laboratory (EMBL) in Hamburg (Germany) working on the development of a new synchrotron beamline (X12, DESY). He joined the European Institute of Chemistry and Biology in January 2006 as a CNRS Scientist.

 

 

 

Dongyao Li was born in Xiangyang, Hubei, China. In 2015 he received his BS degree in chemistry at Hubei Normal University. He obtained his MS degree from Huazhong University of Science and Technology in 2017 under the supervision of Prof. Gan. and is currently working toward a Ph.D. in the same group, focusing on design, synthesis and applications of artificial foldamers based on aromatic oligoamides.

 

 

Quan Gan was born in 1982 in Wuhan, China. He received bachelor’s degree and master’s degree in Organic Chemistry from Central China Normal University in 2005 and 2008. After that, he took part in a joint doctoral programme under the supervision of Prof. Hua Jiang at the Institute of Chemistry, Chinese Academy of Sciences and Dr. Ivan Huc at the European Institute of Chemistry and Biology, Bordeaux, working toward the synthesis and the characterization of aromatic foldamers to mimic the structures and functions of biomacromolecules, and received his Ph.D. degree in early 2013. In 2013/2014, he worked as a Marie Curie Postdoctoral Research Fellow at the University of Cambridge under the guidance of Prof. Jonathan Nitschke. He has been a Professor working on supramolecular chemistry at the Huazhong University of Science and Technology, China, since December 2014.

 

 

What inspired your research in this area?

The fantastic structures and functions of biomacromolecules always inspire our research.

 

What do you personally feel is the most interesting outcome of your study?

The hybridization of single helices of aromatic foldamers with full handedness control can give rise to the complete chiral control of double helices.

 

What directions are you planning to take with your research in future?

To explore the functions such as chiral sensors or catalysts is the aim that we focus on with foldamers. Here, the complete chiral control of aromatic helices offering a stable chiral environment within the cavity would provide chances to develop these functions, and which is currently being made in our laborotary.

 

Read the full article: Absolute handedness control of oligoamide double helices by chiral oxazolylaniline induction

See the other articles showcased in this month’s Editor’s Collection

See all the full articles on our publishing platform

 

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Editor’s Collection: Meet the author – Pablo Martinez-Bulit

Introducing Dr Pablo Martinez Bulit, first author on “One-pot synthesis of porphyrin-based [5]rotaxanes”

Pablo was born in Mexico City, where he received his B.Sc. in Chemistry from Universidad Nacional Autónoma de México, (UNAM). He obtained his Ph.D. from the University of Windsor, Canada, in 2019, under the supervision of Prof. Stephen Loeb where his research was focused on crystalline materials incorporating rotaxanes and porphyrins. He is currently working as a Postdoctoral Research Associate at the University of Glasgow.

Dr. Pablo Martinez Bulit

 

What inspired your research in this area? 
The long-term focus of this research was to prepare metal-organic frameworks (MOFs) incorporating both a rotaxane linker and a porphyrin linker. We had some initial success and characterised the solvent dependent dynamics of a rotaxane wheel in the solid-state for a porphyrin-based MOF (https://pubs.acs.org/doi/abs/10.1021/acs.cgd.9b00669). However, it remained a challenge to synthesize complex linkers that combined multiple rotaxanes on a porphyrin backbone. This project was a nice challenge as it combined the different research areas of the Loeb Research Group: organic synthesis, supramolecular chemistry to make mechanically interlocked molecules, and crystallography.

 

What do you personally feel is the most interesting outcome of your study? 
The fact that you can make and isolate these molecules this easily still amazes me. As the paper shows, this method is tolerant to a variety of functional groups so the potential to tailor the porphyrin-rotaxane hybrids for different applications is readily achievable.

 

What directions are you planning to take with your research in future?
Upscale the syntheses to make gram quantities and explore their possible incorporation into MOFs. Ideally these types of dynamic rotaxane linkers can be used as mechanically interlocked  switches in the solid-state.

Read the full article: One-pot synthesis of porphyrin-based [5]rotaxanes

See the other articles showcased in this month’s Editor’s Collection

See all the full articles on our publishing platform

 

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Editor’s Collection: Meet the authors – Jun, Chenoweth and Petersson

Left to right: E. James Petersson, Joomyung (Vicky) Jun, and David M. Chenoweth

Let’s meet the researchers!

Joomyung (Vicky) Jun was born in South Korea and received her B.Sc. degree in chemical biology at U. C. Berkeley in 2012, performing undergraduate research with Kenneth Raymond. She then worked with Ronald Zuckermann at the Molecular Foundry in Lawrence Berkeley National Laboratory until 2014. Her research (Ph.D. 2019) at University of Pennsylvania focused on the development of novel and underexplored fluorogenic small molecules. She was co-advised by Professors Chenoweth and Petersson. She is currently a postdoctoral scholar with Ronald T. Raines in the Department of Chemistry at Massachusetts Institute of Technology.

David M. Chenoweth was born in Indiana, USA and received his B.S. degree from Indiana University-Purdue University Indianapolis (IUPUI) in 1999. He worked at Dow AgroSciences and Eli Lilly before joining Peter Dervan’s group at the California Institute of Technology to pursue a Ph.D. After graduation in 2009, he was an NIH Postdoctoral Fellow with Timothy Swager at Massachusetts Institute of Technology. David was appointed Assistant Professor in the Department of Chemistry at the University of Pennsylvania in 2011 and was promoted to Associate Professor with tenure in 2017.  He is also a member of the Biochemistry and Molecular Biophysics Graduate Group in the Perelman School of Medicine and the Bioengineering Graduate Group in the School of Engineering and Applied Science.

E. James Petersson was born in Connecticut, USA and completed his undergraduate education at Dartmouth College and his graduate study under Dennis Dougherty at the California Institute of Technology. After receiving his Ph.D. in 2005, he was an NIH Postdoctoral Fellow at Yale University with Alanna Schepartz. He joined the Department of Chemistry at the University of Pennsylvania in 2008 and the Department of Biochemistry and Molecular Biophysics in the Perelman School of Medicine in 2018. His research has been recognized by several awards, including the Searle Scholar, an NSF CAREER award, and a Sloan Fellowship.

 

What inspires your interest in fluorescent probes?

It is said that “seeing is believing,” and fluorescent probes allow one to directly visualize molecules in complex biological processes, often with high specificity. Small molecule fluorophores enable highly sophisticated microscopy techniques for “seeing” into the body or into cells, techniques that are essential for basic biological research as well as for the diagnosis of diseases, which I find fascinating.

What primary research are you carrying out in the area?

Although numerous fluorescent probes are known, the vast majority of these probes consist of a diminutive set of classical “core” dyes such as coumarin, fluorescein, or BODIPY. Dr. Jun’s thesis research focused on developing underexplored or novel fluorescent cores based on modular scaffolds that exhibited advantages over classic and contemporary dyes.  Prof. Petersson and Prof. Chenoweth have collaborated for many years on various optically active probes, including genetic encoding of fluorescent unnatural amino acids from the Petersson laboratory and photo-convertible small molecules from the Chenoweth laboratory, as well as synergistic projects using tools from the Chenoweth laboratory in protein labeling.

How do you hope this review will help and inspire future research in the area?

One of the challenges in this field is the gap between new probe development and its practical application in a biological system, which are much more complicated than the in vitro system. Says Jun: “I hope this review can be helpful for both chemists and biologists to understand the underlying concept of fluorophore design and to reach a point where chemists can tailor the probe based on the specific biological system of interest.”

 

Read the full article: Rational Design of Small Molecule Fluorescent Probes for Biological Applications

See the other articles showcased in this month’s Editor’s Collection

See all the full articles on our publishing platform

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