Archive for November, 2010

Introducing 18F in amino acids

Véronique Gouverneur and colleagues at University of Oxford, UK,  have designed an excellent avenue to generate 18F-labelled molecules via traceless Staudinger ligation.

This OBC HOT article is free to access until the end of the year. The referees rated it as very significant and the authors say that this novel prosthetic group 18F-radiochemistry may find numerous applications in the context of peptide 18F-labelling as the new functionality installed upon ligation is the native amide bond.

This article is part of the fluorine chemistry web themed issue that will be published on line in December. Watch out for it and if you want us to let you know when it is published contact us.

The traceless Staudinger ligation for indirect 18F-radiolabelling
Laurence Carroll, Sophie Boldon, Romain Bejot, Jane E. Moore, Jérôme Declerck and Véronique Gouverneur
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C0OB00564A , Paper

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Mimic for DNA synthesis

Piet Herdewijn from the Catholic University of Leuven, Belgium, and colleagues have designed a series of leaving groups that are compatible with HIV-1 reverse transcriptase (an enzyme that synthesises DNA from RNA).

The manuscript has been highlighted in Highlights on Chemical Biology and it is also a OBC Hot article which will be free to access until the end of the year.

Tha referees said that it was a VIP paper that made a very important contribution to the field.

Read more here

3-Phosphono-L-alanine as pyrophosphate mimic for DNA synthesis using HIV-1 reverse transcriptase
Shiqiong Yang, Mathy Froeyen, Eveline Lescrinier, Philippe Marlière and Piet Herdewijn
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C0OB00554A , Paper

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Push-Pull cyclophanes: Thermodynamic studies on these NLO materials

Daniel Häussinger, Marcel Mayor and co-workers at University of Basel in Switzerland look at the physical organic aspects of push-pull biaryls and their dynamic conformational interchange for the preparation of bulk organic materials that will display non-linear optical activities.

Two main physical properties are crucial for a strong nonlinear optic response: a large hyperpolarizability of the chromophore and a noncentrosymmetric centre.

In this HOT paper, the authors describe the rotational barriers for atropisomer interconversion in a series of cyclophane derivatives functionalized with complementary electron donating/withdrawing substituents. The referees said that it was a very significant paper in the fied.

You can now read it for free until the end of the year.

Racemisation dynamics of torsion angle restricted biphenyl push-pull cyclophanes
Jürgen Rotzler, Heiko Gsellinger, Markus Neuburger, David Vonlanthen, Daniel Häussinger and Marcel Mayor
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C0OB00650E, Paper

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Making sun resistant clothes pegs hangs out in the press

We are very glad to say that this OBC paper by Michelle Coote and coworkers at the Australian National University in Camberra, has been highlighted in many different media outlets.

From the OBC editorial office we wanted to congratulate Michelle and her group.

The article will be free to access until the end of the year.

Revising the mechanism of polymer autooxidation
Ganna Gryn’ova, Jennifer L. Hodgson and Michelle L. Coote
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C0OB00596G , Paper

This article is part of a special web themed issue on radical chemistry that will be published shortly in memory of Professor Athel Beckwith and in recognition of his many distinguished contributions to chemistry. If you want to receive an e-mail when this special web themed issue is on-line do let us know.

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A threat for oral thrush: Cooperative regulation of mouth microbes

The very successful OBC Communication by Robert H. Cichewicz and coworkers, at the University of Oklahoma, on mutanobactin A and its influence on the yeast-mycelium transition of Candida albicans is now the inside cover of Issue 24.

These are just some examples of the web pages where this amazing article has been highlighted:

Congratulations to the authors on delivering such a great piece of research!

Read the original paper free to access until next year:

Mutanobactin A from the human oral pathogen Streptococcus mutans is a cross-kingdom regulator of the yeast-mycelium transition
P. Matthew Joyner, Jinman Liu, Zhijun Zhang, Justin Merritt, Fengxia Qi and Robert H. Cichewicz
Org. Biomol. Chem., 2010, 8, 5486-5489
DOI: 10.1039/C0OB00579G , Communication

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First total synthesis of two furanosesquiterpenes

Rajeev Menon and Martin Banwell at the Australian National University in Camberra have identified a novel and highly efficient Au (I) catalysed intramolecular Michael addition reaction that is a key step towards the first total synthesis of crassifolone and dihydrocrassifolone.

These two natural products can be extracted from the wood of the tree Myoporum Crassifolium that grows in Noumea, New Caledonia.  So now there is no need to go to this paradisiac beach to get these two natural products – you just need to get the white lab coat and safety googles on and go to the lab! 🙂

‘This unprecedent reaction may represent a useful new protocol for the construction of other terpenoids incorporating an annulated furan core’, say the authors of the paper.

Read it free to access until next year!

Total syntheses of the furanosesquiterpenes crassifolone and dihydrocrassifolone via an Au(I)-catalysed intramolecular Michael addition reaction
Rajeev S. Menon and Martin G. Banwell
Org. Biomol. Chem., 2010, 8, 5483-5485
DOI: 10.1039/C0OB00487A

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Mimicking nature’s leaving group

by Russell Johnson 

A synthetic leaving group to be used in DNA synthesis could lead to new antiviral drugs or an artificial rival to DNA, say European scientists. 

DNA can be synthesised using enzymes to catalyse the polymerisation of nucleoside triphosphate building blocks. Nucleoside monophosphates are incorporated in a growing nucleic acid chain, while pyrophosphates are released as leaving groups. Replacing the pyrophosphate leaving groups with synthetic alternatives could open up a range of biotech opportunities. 

Now, Piet Herdewijn from the Catholic University of Leuven, Belgium, and colleagues have designed a series of leaving groups that are compatible with HIV-1 reverse transcriptase (an enzyme that synthesises DNA from RNA). They found that the most efficient pyrophosphate mimic was 3-phosphono-L-alanine. Herdewijn explains that they have managed to improve the kinetics of incorporating the nucleotide into the chain compared to previous leaving groups. However, 3-phosphono-L-alanine has a lower efficiency than pyrophosphate, which can cause DNA synthesis to stall. But the team says that they hope to use the stalling effect to create new antiviral drugs that selectively stall the synthesis of viral DNA, preventing virus replication. 

Structures of 2'-deoxyadenosine nucleotide and 3-phosphono-L-alanine

The implications of this research aren’t limited to new drugs, says Herdewijn, and designing a replacement for the pyrophosphate group could be a step towards creating an artificial rival to DNA. ‘The long term goal is to look at nucleic acid synthesis using alternative biochemistry and eventually make xeno-nucleic acids [artificial nucleic acids] as an alternative to natural nucleic acids in vivo,’ explains Herdewijn. 

David Jakeman, an expert in biosynthetic mechanisms at Dalhousie University, Canada, says that this could be an interesting avenue of research in the future. ‘The study of non-canonical mimics of pyrophosphate provides insight into the role of the leaving group in DNA synthesis, by HIV-1 reverse transcriptase. These advances may provide new directions for biotechnological applications of in vitro, and ultimately in vivo, DNA synthesis and replication.’ 

Read the full article here and the full story in Highlights in Chemical Biology

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Meet the OBC team

The OBC team will be attending a number of conferences in 2011 and we would be delighted to meet you.

 

Here’s where you can meet us in the coming months:

Please let us know if you are planning on attending any of these meetings as it would be lovely to meet you there.

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Submit abstracts for ISACS now

Online abstract submission for the International Symposia on Advancing the Chemical Sciences (ISACS) is now open. Abstracts are invited by the dates below:

ISACS5: Challenges in Chemical Biology:
Oral Presentations: 21 January 2011, Posters: 27th May 2011
ISACS6: Challenges in Organic Materials & Supramolecular Chemistry:
Oral Presentations: 18 March 2011, Posters: 8th July 2011

You can find out more about the exceptional speaker line-up at each event, sign up for news updates and submit abstracts and oral presentations at www.rsc.org/isacs.

3. ISACS5 – Challenges in Chemical Biology

ISACS5 – Challenges in Chemical Biology: 26-29 July 2011, Manchester, UK

Online abstract submission is now open for ISACS5, the fifth in the International Symposia on Advancing the Chemical Sciences (ISACS) conference series from the RSC. Contributions for posters are invited by 27th May 2011 to supplement the exceptional plenary programme. Also, new for 2011, we are delighted to have oral presentation slots available – submission deadline 21 January 2011. You can find out more about the outstanding speaker line-up, sign up for news updates and submit abstracts at www.rsc.org/isacs5

4. ISACS6 – Challenges in Organic Materials & Supramolecular Chemistry

ISACS6 – Challenges in Organic Materials & Supramolecular Chemistry: 2-5 September 2011, Beijing, China

Online abstract submission is now open for ISACS6, the sixth in the International Symposia on Advancing the Chemical Sciences (ISACS) conference series from the RSC. Contributions for posters are invited by 8th July 2011 to supplement the exceptional plenary programme. Also, new for 2011 we are delighted to have oral presentation slots available – submission deadline 18 March 2011. You can find out more about the outstanding speaker line-up, sign up for news updates and submit abstracts at www.rsc.org/isacs6

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HOT: Nucleotidylation of unsaturated carbasugar in validamycin biosynthesis

Taifo Mahmud and colleagues at Oregon State and Shanghai Jiao Tong Universities present their results on the role of ValB in validamycin biosynthesis and facilitate the development of new tools for the production of carbohydrate mimetics in this HOT and very significant (as rated by the referees) paper.

You can now read this HOT paper which is free to access until the 14th of December and leave your comments on our blog.

Nucleotidylation of unsaturated carbasugar in validamycin biosynthesis
Jongtae Yang, Hui Xu, Yirong Zhang, Linquan Bai, Zixin Deng and Taifo Mahmud
Org. Biomol. Chem., 2011, Advance Article
DOI: 10.1039/C0OB00475H

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