Organic Chemistry Frontiers Blog

Organic Chemistry Frontiers is delighted to announce the appointment of Professor Buddhadeb Chattopadhyay from Centre of Biomedical Research (CBMR), Lucknow, India as an Associate Editor. In his new role, Professor Chattopadhyay will contribute to the journal’s development through manuscripts management, strategic setting and more. Please join us in welcoming him!

Learn more about our new Associate Editor:

Buddhadeb obtained his B.Sc. (2001) in chemistry from the Burdwan University and M.Sc. (2003) in chemistry from Visva-Bharati University. In 2003, he left Visva-Bharati and enrolled in Kalyani University for his Ph.D. in the laboratories of Professor K. C. Majumdar. After postdoctoral research work around six years in the USA from 2009 to 2024 (University of Illinois at Chicago, USA and Michigan State University, East Lansing, USA), Buddhadeb started his independent research career at the Centre of Biomedical Research (CBMR), Lucknow, India, where he is currently holding the position of Associate Professor in the Department of Biological & Synthetic Chemistry.

Buddhadeb was the recipient of the Ramanujan Faculty award, DST Young Scientist Award, Thieme Chemistry Journal Award, SERB-STAR AWARD–2019 (Science and Technology Award for Research), SERB-TETRA AWARD–2022 (Technology Translation Award), Fellow of National Academy of Sciences (FNASc), and Fellow of the Royal Society of Chemistry (FRSC).

His research interest includes the catalyst/ligand engineering for the C–H bond activation/functionalization, especially C–H bond borylations of organic molecules and metal-nitrene/carbene chemistry via metalloradical catalysis. To find more about Buddhadeb and his research work, visit The Chattopadhyay Group.

Read some of our new AE’s research in the papers below:

	C–H borylation: a tool for molecular diversification Saikat Guria, Mirja Md Mahamudul Hassan and Buddhadeb Chattopadhyay* Org. Chem. Front., 2024,11, 929-953 10.1039/D3QO01931D
	An iron(ǁ)-based metalloradical system for intramolecular amination of C(sp2)–H and C(sp3)–H bonds: synthetic applications and mechanistic studies   Sandip Kumar Das, Subrata Das, Supratim Ghosh, Satyajit Roy, Monika Pareek, Brindaban Roy, Raghavan B. Sunoj* and Buddhadeb Chattopadhyay* Chem. Sci., 2022,13, 11817-11828 10.1039/D2SC03505G

Thermodynamic- and kinetic-controlled deprotonation of symmetric and asymmetric ketones is a well-known process that leads to the formation of enolates, one of the most important intermediate in organic chemistry. Regio-selective deprotonation assumes extreme importance, being critical to the success of organic reactions, when unsymmetrical carbonyl compounds such as ketones, having α-hydrogens in both sides, are taken into account. To the best of our knowledge, no studies have specifically reported on β-functionalized ketones in which regioselective formation of enolates could be less obvious and intuitive with respect to that observed in the most familiar α-functionalized analogues.

Figure 1. Chemical structure of ketones 1–6 involved in this study (A). Potential thermodynamic (4–6a) and kinetic enolates (4–6b) from the deprotonation of 4–6 using LHMDS (B).

Here we report a theoretical study at the DFT level of theory on a group of β-functionalized cyclic ketones 1–6 (Figure 1) to shed light on kinetic parameters (e.g., electronic effect and steric hindrance) and any other parameters (e.g., non-covalent interactions) related to the formation of kinetic and thermodynamic enolates through the use of hindered and strong bases, such as LHMDS and KHMDS. These bases have been taken into account as models to investigate the effect of counter cations (Li⁺ or K⁺) on the enolate formation process.

Surprisingly, “thermodynamic enolate” 4a was obtained as single product under kinetic conditions (THF, −78 °C) while ketone 5, gives “kinetic product” 5b as main enolate under same conditions with a regioselectivity of 70 : 30 over the “thermodynamic product” 5a. The unusual behavior reported in the literature for ketones 4 and 5 in the presence of LHMDS captured our attention and fed our curiosity.

Figure 2. Conformers and relative stability from Li-enolates from ketone 4. Relative stability for each Li-conformers is reported in kcal/mol in parentheses. Hydrogens have been hidden for better clarity.

A conformational study on the Li⁺@4 complex highlights the coordination ability of the functional group in β-positon (e.g. aldehyde group) and unveils its effect on the resulting enolate distribution (see Figure 2).  The lack of functional groups with coordination ability in 1–3 does not allow the double coordination of Li⁺ cation and consequently, no alteration of the enolate distribution is observed when (Me₃Si)₂^– was exchanged with LHMDS. The observed effect must be attributed to the coordination ability of the functional group (e.g. aldehyde in 4, cyano in 5 and nitro group in 6) and their directionality. Aldehyde and nitro group in 4 and 6, respectively, showed a superior directionality compared to cyano group in 5, leading to a higher stabilization of the relative TS for the presence of Li⁺ or K⁺ cations and consequently, higher regioselectivity towards “thermodynamic enolate” as experimentally reported (Table 1).

Table 1 Activation energy (E_a), ∆E_Ea and ∆∆E_Ea for ketones 4–6 in the presence of Li⁺ and K⁺.

On the other hand, the linear orientation of the cyano group (–C≡N) in 5 does not allow a proper coordination with the Li⁺ cation, showing a ∆E_Ea of 0.7 kcal/mol and leading us to suppose the presence of both enolates (5a and 5b) in the resulting solution (see Table 1 – Entries 5 and 6) as reported in literature. However, higher regioselectivity towards the “thermodynamic enolate” 5a is detected in presence of KHMDS where a ∆E_Ea of 4.9 kcal/mol is now observed (see Table 1 – Entries 7 and 8). This is rationalized by the better coordination between K⁺ cation and cyano group derived from the bigger size of the K⁺ cation with respect to the Li⁺ cation (Figure 3), highlighting how preliminary base selection (e.g., LHMDS vs. KHMDS) could strongly affect the resulting enolate distribution.

Figure 3. Comparison between thermodynamic enolates 4a (A), 5a (B) and 6a (C) coordinated to Li+ (left) and K+ (right).

We believe this work: (i) sheds light on the kinetic parameters that affect the regioselectivity in β-functionalized cyclic ketones, (ii) gives reasonable explanations for the unusual regioselectivity reported in the literature for some β-functionalized cyclic ketones such as 4 and 5, and (iii) could be a source of inspiration for future regioselective synthetic approaches and promotes the use of non-covalent interactions in the field of stereochemistry.

Corresponding author:

Emerging Investigator: Chuan He

Position          Associate Professor Postdoc          2013–2017  University of Cambridge Education       2008–2013  Wuhan University          Ph.D.                        2004–2008  Wuhan University          B.Sc. Group website        http://faculty.sustech.edu.cn/hec/en/ ORCID                    0000-0002-9983-7526

Read Chuan He’s Emerging Investigator Series article in Organic Chemistry Frontiers and learn more about him.

	Stereodivergent asymmetric synthesis of P-atropisomeric Si-stereogenic monohydrosilanes
	Bo Yang,‡ Xingfa Tan,‡ Yicong Ge, Yingzi Li and Chuan He*
	We herein report an efficient one-pot strategy for the stereodivergent asymmetric synthesis of various P-atropisomeric Si-stereogenic monohydrosilanes with excellent stereoselectivity from dichlorosilanes.
	From the themed collection: OCF Emerging Investigator Series
	The article was first published on 23 Aug 2023
	Org. Chem. Front., 2023, Advance Article
	https://doi.org/10.1039/D3QO01084H

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Cinammylamines and 3,3-diarylallylamines represent an important class of molecules for drug discovery, and can serve as intermediates thanks to their olefin functionality which can lead to further elaboration. However, there are numerous challenges in the application of organometallic methods to synthesize highly-functionalized 3,3-diarylallylamines. Historically these reactions required protecting groups, with the protecting group both limiting substrate decomposition as well as improving regioselectivity by imparting a directing effect (Scheme 1a). Recent efforts have established feasibility for direct free amine-directed reactions that avoid the need for protection and deprotection, but which suffer from selectivity issues due to the presence of different Pd species which promote different reaction pathways (Scheme 1b). Notably, β-protio allylamines undergo both Heck reactions to give trans-functionalised products as well as C–H activation to give the cis-functionalised products as mixtures. Meanwhile, β-substituted allylamines preferentially undergo a γ,γ’-diarylation reaction rather than the simple γ-monoarylation due to the reactivity of the in situ-formed Pd nanoparticles responsible for the reaction.

To solve the stereoselectivity challenge, the group of Prof. Michael C. Young at the University of Toledo has unveiled a new protocol for selective Mizoroki–Heck arylation of unprotected cinnamyl and allylamines (Scheme 1c). Compared with previous work, a pivotal change was to exploit an oxidative Heck reaction using aryl boronic acid as the coupling partner. By using the aryl boronic acid, the conditions could be made sufficiently mild to essentially shut down the C–H activation pathway, giving >20:1 selectivity in most cases.

Scheme 1. Approaches for the Mizoroki–Heck reaction of allyl and cinnamylamines.

The researcher team demonstrated the broad applicability of their approach by successfully synthesizing a range of unsymmetrical 3,3-diarylallylamine derivatives with overall good structural diversity. The method presented by the research team not only improves the overall synthetic process but also offers a pathway to access a wider range of drug molecules in a more cost-effective manner. By comparing their reimagined Mizoroki–Heck reaction with existing methodologies utilizing protected amine substrates and aryl iodides, the researchers highlighted the numerous advantages of their approach. With improved atom and step economy, higher selectivity, and broader substrate scope, their method represents a significant advancement in the field of organic synthesis.

Scheme 2. Substrate scope of aryl boronic acid coupling partners in the E-selective Mizoroki–Heck reaction on cinnamylamines. Reactions were performed using amine (0.15 mmol) and aryl boronic acid (0.30 mmol) under air atmosphere. All reactions were performed in triplicate and the average isolated yields reported. E/Z ratios were determined from the crude ¹H NMR using 1,1,2,2-tetrachloroethane as internal standard. ^a Solvent was 0.9 mL HFIP:0.3 mL AcOH. ^b Solvent was 4.0 mL AcOH. ^c Reaction was performed under 1 atm of O₂.

The researchers examined electron-deficient carbonyl-containing compounds with various functional groups, such as esters, ketones, aldehydes, amides, and nitriles (Scheme 2). The reaction proceeded successfully for all these compounds, and the nitrile group remained intact without undergoing hydrolysis, unlike in previous harsher conditions using a different coupling partner. The reactions generally exhibited high E-selectivity, with the Z-product undetectable in several cases. The researchers also explored electron-poor substrates containing fluorides and bromides, although the bromide compound had a lower yield. The recovery of the starting amine was reasonably high, and analysis revealed that the low yield of the bromide compound was due to a complex mixture of products resulting from Suzuki-Miyaura cross-coupling. Conjugated systems and electron-rich groups on the arene were also compatible with the reaction. Additionally, a coupling partner with both electron-withdrawing and donating groups yielded the desired product without the formation of the Z-isomer.

Scheme 3. Substrate scope of cinnamylamine coupling partners in the E-selective Mizoroki–Heck reaction on cinnamylamines. Reactions were performed using amine (0.15 mmol) and phenyl boronic acid (0.30 mmol) under air atmosphere. All reactions were performed in triplicate and the average isolated yields reported. E/Z ratios were determined from the crude ¹H NMR using 1,1,2,2-tetrachloroethane as internal standard. ^a Solvent was 0.9 mL HFIP:0.3 mL AcOH. ^b Solvent was 4.0 mL AcOH. ^c Reaction was performed under 1 atm of O₂.

In the investigation of amine substrate scope, various secondary amines were found to be viable substrates (Scheme 3). This included secondary amines with α-tertiary, α-secondary, and α-primary aliphatic substituents. Although cyclopropylamine showed low reactivity, introducing a methylene spacer enabled the generation of a reactive substrate. When targeting the addition of phenyl groups to the substrate, a spot check revealed a strong preference for the E-product over the Z-product (>20:1 ratio) when using 4-ethoxycarbonyl phenylboronic acid as the coupling partner. Sterically congested bornylamine derivatives, aliphatic amines with aromatic or heteroaromatic groups, and saturated heterocycles such as tetrahydrofurfuryl could also be successfully converted to the desired products. Similar E/Z-selectivity was observed when using 4-ethoxycarbonyl phenylboronic acid as the coupling partner for these substrates. Amino acid-derived substrates yielded good yields of the product, with complete E-selectivity observed based on the crude reaction mixture’s 1H NMR. The stereochemistry of the amino ester was confirmed to have >99% enantiomeric excess (ee) based on Mosher amide analysis. Electron-rich furfurylamine-derived substrates were viable, whereas pyridines did not show reactivity. N-tert-butyl-(4,4-dimethylamino)cinnamylamine, which decomposed under previous harsh conditions, could be converted to the desired product under the milder conditions, albeit with decreased Z/E-selectivity. Furthermore, an amine derived from podophyllotoxin, containing several oxygen-based functional groups, successfully participated in the reaction. Control of β-hydride elimination was achieved when a 3-(phenethyl)-substituted allylamine was used, resulting in the formation of the β,γ-unsaturated allylamine product. Expanding the scope to less and more-substituted substrates, primary cinnamylamine was functionalized with the desired product in 68% yield. The need for CO₂ to prevent amine decomposition during the reaction, as in previous work, was not necessary under the milder conditions. Acyclic and cyclic amine substrates could be functionalized with good yields, demonstrating the versatility of this modified approach to amine functionalization. Trans-selectivity was observed when unsymmetrical 3,3-diarylallylamines were used as substrates.

Figure 1. Proposed catalytic cycle.

Young and his coworkers propose a preliminary mechanistic understanding of the Mizoroki-Heck reaction using aryl boronic acids as coupling partners (Figure 1). They suggest that the active catalyst is formed through the incomplete reduction of Pd(OAc)₂ to Pd nanoparticles (NPs) ligated by allylamine. Transmetallation with activated aryl boronic acid occurs through ligand exchange, followed by C–Pd bond insertion across the alkene. This forms an organic metallic intermediate, which undergoes β-hydride elimination to yield the desired product coordinated to the nanoparticle. The catalyst is regenerated through oxidation of the metal-hydride in the presence of molecular oxygen and acetic acid, while the functionalized amine is exchanged for unfunctionalized substrate. Further investigations are needed to confirm and refine this proposed mechanism.

The developed method not only demonstrates compatibility with 1°, 2°, and 3° amines but also showcases its ability to facilitate chain walking reactions. Moreover, it provides practical and scalable solutions to address longstanding challenges in drug synthesis. The implications of this research extend far beyond the laboratory, as it opens up new possibilities for pharmaceutical development. By harnessing the power of the Mizoroki–Heck reaction with aryl boronic acids, researchers can now expedite the synthesis of 3,3-diarylallylamines, ultimately accelerating the discovery and development of novel drugs targeting G protein-coupled receptors. This breakthrough has the potential to revolutionize the pharmaceutical industry, improving drug accessibility and affordability for patients worldwide. Its impact on drug synthesis and the potential for transforming the pharmaceutical landscape cannot be overstated. This innovative approach sets the stage for further advancements in the field and offers hope for the discovery of new and more effective medications.

Prof. Michael Christopher Young

Michael Young was born in King, N.C. (approximately where Mayberry of Andy Griffith fame would be if it were real). He always knew he wanted to be a scientist, and while studying at Western Carolina University decided that chemistry was a better career choice than trying to genetically engineer Pokémon. He began his independent career after a PhD (2014) at UC – Riverside with Prof. Richard Hooley and a postdoc (2014 – 2016) at UT – Austin with Prof. Guangbin Dong. His group is interested in developing more sustainable routes to biologically relevant compounds, with a particular interest in G-protein coupled receptor-agonists and antagonists.

Olutayo Nathanael Farinde

Olutayo Nathanael Farinde is a PhD student currently working in the Young lab at The University of Toledo. He holds a BS degree in Analytical and Environmental Chemistry from the University of Ibadan, Nigeria, which he completed in 2019. At The University of Toledo, Nate’s research focuses on the area of C–H functionalization and alkene functionalization of amines. He is interested in developing novel synthetic methods which can be used to synthesize biologically-active molecules. When he’s not at the bench, Nate enjoys learning new computational methods.

Dr. Satheesh Vanaparthi

Satheesh Vanaparthi was born and raised in Telangana, India. He obtained his BSc and MSc from Osmania University and later received his PhD from Indian Institute of Technology – Guwahati, India (Prof. T. Punniyamurthy, 2019). After a postdoc at the Technion-Israel Institute of Technology, Israel (Prof. Graham de Ruiter), Satheesh moved to The University of Toledo, USA to work with the Young lab where he is currently working on rhodium and palladium-catalysed transformations.

Kendra Kumar Shrestha

Kendra hails from Nepal. He obtained his BSc and MSc from Tribhuvan University. In 2019, he moved to The University of Toledo to pursue his Ph.D. with Prof. Michael C. Young where he is working on palladium-catalysed selective functionalisations of aminees as wel as cycloaddition reactions exploiting organo-supramolecular catalysis.

Carmen Rose Rhinehalt

Carmen is a chemistry major with a passion for how and why the world works. She is currently working on the deuteration of benzoic acid derivatives and would like to transfer everything she has learned in the lab and chemistry to the development of cosmetic products. In her free time, Carmen likes to try new recipes and bake all kinds of sweets!

Dr. Vinod Gokulkrishna Landge

Vinod obtained his PhD from the National Chemical Laboratory in Pune, India, in 2019, where worked with Prof. Ekambaram Balaraman. He then joined the Young lab where he worked extensively on Pd and organocatalysis. He current works as a Process Development Scientists at Piramal Pharma Solutions.

Cycloisomerization of 1,n-enynes provides a variety of cyclic compounds via multiple bond cleavage and formation. Since these processes are generally induced by alkyne π-bond activation, transition metal catalysts have been well studied for the selective construction of these cyclic products (Scheme 1A). However, transition metal catalysts can be hardly applied to electron-deficient alkynes having acyl groups or other relative strong electron-withdrawing groups. Since acyl groups can be converted to various functional groups, it is desirable to develop catalyst systems applicable to such starting materials. In addition, the activation of alkynes via carbonyl groups can lead to the construction of new skeletons and thus systematic studies on the cycloisomerization of enynones is an important research project.

Recently, as a further expansion of BF₃·MeCN-catalyzed cycloisomerization of 7-en-2-ynones into six-membered cyclic dienes (Org. Lett., 2020, 22, 4063), the group of Prof. Akio Saito from Tokyo University of Agriculture and Technology have developed the aluminum halide-mediated formation of the halogenated bicyclo[3.1.0]hexanes from the same substrates (Scheme 1B).

Scheme 1: Cycloisomerization of enynes and enynones.

The aluminum halide-mediated cycloisomerization of 7-en-2-ynones proceeded at room temperature to give the corresponding the halogenated bicyclo[3.1.0]hexanes in 45-96% yields. Furthermore, quenching with NCS (N-chlorosuccinimide) before the usual work-up afforded the dichloroketone product in good yield through the chlorination of the aluminum enolate intermediate (Scheme 2).

On the basis of DFT calculations and experimental data, we proposed the mechanism including the common zwitterionic intermediate with six-membered cyclic dienes (Scheme 1B), and concluded that different bond lengths between group 13 elements and halogens lead to cycloisomerization into different products.

Scheme 2: Aluminum halide-mediated cycloisomerization of 7-en-2-ynones into the halogenated bicyclo[3.1.0]hexanes

Corresponding author:

Akio SAITO Professor

Akio SAITO received his Ph.D. degrees from Tokyo University of Pharmacy and Life Sciences in 2003. From 2001 to 2005, he joined as a Research Associate in the group of Professor Takeo Taguchi at the same university. From 2005 to 2012, he worked as an Assistant Professor with Professor Yuji Hanzawa at Showa Pharmaceutical University. In 2012, he moved to the present university as an Associate Professor. Since 2021, he was appointed to the present position. His current research interests include the development of domino reactions and multicomponent reactions based on iodine and other non-metallic elements chemistry. He is the author of more than 96 articles indexed by WoS and cited more than 2400 times with an h-index = 31.

https://www.webofscience.com/wos/author/record/C-1270-2013