Archive for the ‘Reviews’ Category

Phosphofructokinase: structural and functional aspects and design of selective inhibitors

Human African trypanosomiasis, also commonly known as sleeping sickness, is a disease that leads to many deaths worldwide and is caused by protozoan parasites. When in the bloodstream these parasites can only produce the ATP (adenosine triphosphate) they need to survive via a glycolytic pathway, making this pathway essential for the parasite’s survival.

Phosphofructokinase is a kinase enzyme that phosphorylates fructose 6-phosphate in the glycolysis metabolic pathway, and is of central importance to carbohydrate metabolism. As such it is a very promising target for anti-trypanosomal drug design to treat sleeping sickness.

In this review Renata B. Oliveira et al. present a survey of recent literature regarding the structural and functional properties of phosphofructokinase as well as discussing its importance as a target in the development of selective therapeutics to treat Human African trypanosomiasis.

Read the full review here…

Phosphofructokinase: structural and functional aspects and design of selective inhibitors
Stefânia N. Lavorato, Saulo F. Andrade, Thaïs H. A. Silva, Ricardo J. Alves and Renata B. Oliveira
DOI: 10.1039/C2MD20122D

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Imaging probes targeting the CXCR4 chemokine receptor

Nuclear (PET/SPECT) and optical imaging probes targeting the CXCR4 chemokine receptor
James C. Knight and Frank R. Wuest

Chemokines are a family of small cytokines which are known to activate G protein-coupled receptors thereby inducing cellular migration. So far, approximately 50 chemokines and 20 chemokine receptors have been identified which collectively form the human chemokine system.

The chemokine receptor CXCR4 has been found to be highly expressed in a wide variety of cancer types. It has also been shown that these elevated expression levels are yet further increased upon metastasis. This means that this receptor is a highly attractive target which could facilitate the diagnostic imaging of many aggressive cancers.

In this review James C. Knight and Frank R. Wuest, from University of Alberta, aim to provide a comprehensive overview of the application of CXCR4-targeted imaging probes across both nuclear (positron emission tomography/single-photon emission computed tomography) and optical modalities, which includes a detailed analysis of the chemical aspects of probe design.

Read the full review here…

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Small molecules targeting phosphoinositide 3-kinases

The phosphoinositide 3-kinase (PI3K) pathway is one of the most important signalling cascades in cancer. It has been well established as an attractive oncology target and inhibitors of PI3K have been suggested as promising agents for therapeutic intervention in cancer. Since the discovery of wortmannin and LY294002, the first compounds to inhibit PI3K, a vast number of inhibitors have been identified.

This review from Peng Wu and Yongzhou Hu, Zhejiang University, outlines the current landscape of the development of small molecule PI3K inhibitors, with a focus on structure–activity relationships (SAR) and discussion of co-crystal structures of the twenty-two molecules that are currently under clinical trials and newly emerged ones.

Read the review and let us know your thoughts by commenting below on this blog!

Small molecules targeting phosphoinositide 3-kinases
Peng Wu and Yongzhou Hu
DOI: 10.1039/C2MD20044A

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Natural product-like cyclic peptide libraries by biochemical & biosynthetic preparation

Albert A. Bowers, Purdue University, provides a review focussing on emerging biochemical and biosynthetic methods for the development of peptidomimetic libraries, in particular constrained cyclic peptide libraries that contain natural product-like features, with an emphasis given to small molecules of 30 residues or less.

Discussion includes:

  • Non-ribosomal peptide synthetases (NRPS) or hybrid polyketide (NRPS/PKS) derived libraries
  • Ribosomal peptide libraries
  • Non-natural product-based technologies for library preparation

Want to know more? Have a look now and let us know your thoughts…

Biochemical and biosynthetic preparation of natural product-like cyclic peptide libraries
Albert A. Bowers
DOI: 10.1039/C2MD20068F

This review is part of MedChemComm’s soon to be published Natural Products themed issue, guest-edited by Prof. Christopher Walsh and Dr Sylvie Garneau-Tsodikova.

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The unusual case of a diterpenoid produced by Mycobacterium tuberculosis and its role in human infection

Reuben J. Peters  (Iowa State University) and Francis Mann (Winona Sate University) provide a short and topical account of the discovery of the isotuberculosinol diterpenoid prodution by bacteria Mycobacterium tuberculosis (Mtb).

The authors review the recent findings showing evidence of the biological role of this diterpenoid in the infection process of Mtb. Based on genetic and genomic analysis, the authors also provide insight into the origin of the tuberculosinol gene cluster and its role in human infection.

Curious? Why not read the review article now and let us know what you think…

Isotuberculosinol: the unusual case of an immunomodulatory diterpenoid from Mycobacterium tuberculosis
Francis M. Mann and Reuben J. Peters
DOI: 10.1039/C2MD20030A

This review is part of MedChemComm’s Natural Products themed issue, guest-edited by Prof. Christopher Walsh and Dr Sylvie Garneau-Tsodikova.

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Get your hands on MedChemComm issue 7 today!

This striking cover brings the work of Patrick T. Gunning and co-workers to the forefront of issue 7.

In this Concise article Gunning et al. discuss the design and synthesis of a novel class of ditopic coordination complex-based SH2 domain mimetics using de novo rational and computational design. In addition Gunning et al. identify several lead compounds that bind selectively to target phosphopeptides via the same bivalent binding mechanism employed by SH2 domains in a cell.

Access this article for FREE for 6 weeks!

Src homology 2 domain proteomimetics: developing phosphopeptide selective receptors
Joel A. Drewry, Steven Burger, Amir Mazouchi, Eugenia Duodu, Paul Ayers, Claudiu C. Gradinaru and Patrick T. Gunning

Also in this issue are the following 2 reviews:

The use of phosphate bioisosteres in medicinal chemistry and chemical biology
Thomas S. Elliott, Aine Slowey, Yulin Ye and Stuart J. Conway

M1 muscarinic cetylcholine receptor allosteric modulators as potential therapeutic opportunities for treating Alzheimer’s disease
Michael Decker and Ulrike Holzgrabe

Check out all this and more in the complete online issue

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The use of phosphate bioisosteres in medicinal chemistry and chemical biology

This review from Stuart J. Conway and colleagues at University of Oxford and University of St Andrews, presents the major functional groups that have been employed as phosphate bioisoteres and the context of their use and deployment explained, including:

  • Phosphorus-based phosphate bioisosteres
  • Sulfur-based bioisosteres
  • Carboxylate-based bioisosteres
  • Heterocyclic-based bioisosteres
  • Squaric acid and squaramide-based phosphate bioisosteres
  • Phosphate bioisosteres containing other heteroatoms

Conway et al. hope that this review will provide a useful reference to medicinal chemists and chemical biologists alike who are involved in designing molecules that target phosphate-binding proteins.

The use of phosphate bioisosteres in medicinal chemistry and chemical biology
Thomas S. Elliott, Aine Slowey, Yulin Ye and Stuart J. Conway
Med. Chem. Commun., 2012
DOI: 10.1039/C2MD20079A

 

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Review: M1 muscarinic cetylcholine receptor allosteric modulators as potential therapeutic opportunities for treating Alzheimer’s disease

Despite the tremendous advances in investigating the molecular mechanisms of Alzheimer’s disease and its relevance for society there is an alarming lack of drugs for clinical treatment. Apart from the NMDA antagonist memantine, several acetylcholinesterase inhibitors have been approved for symptomatic treatment of early stages of Alzheimer’s disease.

In this MedChemComm review Michael Decker and Ulrike Holzgrabe present a review of the different chemical structures of allosteric agonists and modulators of the muscarinic acetylcholine receptor subtype 1 (mAChR1 or M1) and their relevance for possible treatment of Alzheimer’s disease. The discussion also focuses on:

  • Their design principles,
  • Common structural properties,
  • Unique features with regard to structure–activity relationships (SARs)

M1 muscarinic cetylcholine receptor allosteric modulators as potential therapeutic opportunities for treating Alzheimer’s disease
Michael Decker and Ulrike Holzgrabe
DOI: 10.1039/C2MD20025B

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Review: Natural products inhibitors of glucose-6-phosphate translocase

This mini-review authored by Prof. Chaitan Khosla and coworkers at Stanford University (CA, USA) provides a
concise overview of natural product inhibitors of the glucose-6-phosphate translocase (G6P T1) system.

Non-insulin dependant diabetes (type II) and carcinogenesis are two major diseases in which abberant glucose levels are observed, and for which glucose-6-phosphate translocase could be a promising therapeutic target.  Enzyme G6P T1 hydrolyses glucose-6-phosphate to glucose, which is then released into the bloodstream: modulating its activity may prove an attractive therapeutic strategy. 

Following an overview of the role of glucose-6-phosphate translocase in human physiology and its potential as a therapeutic target, the review covers its Natural Product inhibitors, including: 

  •    Chlorogenic acid and chlorogenic acid derivatives
  •    Phloretin
  •    Salicilic acid derived G6P T1 inhibitors
  •    Kodaistatins
  •    Mumbaistatins and Mumbaistatins derivatives 



Natural product inhibitors of glucose-6-phosphate translocase
Louise K. Charkoudian, Bailey P. Farrell and Chaitan Khosla
Med. Chem. Commun., 2012   
 






 Access the article by Chaitan Khosla et al. –  Access the full collection on Natural Products

 

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Review: Determination of drug–receptor residence times by radioligand binding and functional assays: experimental strategies and physiological relevance

Previously drug–receptor interactions have only been quantified in terms of their affinity and efficacy but recently the residence time has also been recognized to affect the clinical performance.

In this review Georges Vauquelin aims to try and help chemists to better evaluate the relevance of the kinetic data that may be obtained from compounds by discussing, with the aid of simulations, the different approaches to measure drug binding kinetics that are currently used to measure and calculate ligand–receptor dissociation kinetics, as well as covering some of the potential pitfalls associated with these methods.

To find out more about the finer points of drug–receptor residence times and see how this can help you, read the review now!

Determination of drug–receptor residence times by radioligand binding and functional assays: experimental strategies and physiological relevance
Georges Vauquelin
DOI: 10.1039/C2MD20015E

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