Towards understanding the complex biophysics of Alzheimer’s disease

Scientists from the USA provide important insights into the complex mechanism of amyloid-induced membrane disruption in their recent PCCP article, which will be included in our soon-to-be-published themed issue on biophysical studies of protein misfolding and amyloid diseases.

Zheng et al. investigated the adsorption, orientation and suface interaction of the p3 pentamer with lipid bilayers composed of both pure zwitterionic POPC and mixed anionic POPC-POPG lipids using molecular dynamics simulations.Molecular interactions of Alzheimer amyloid-β oligomers with neutral and negatively charged lipid bilayers

A pathological hall-mark of Alzheimer’s disease is the co-existence of extracellular plaques of amyloid-β and intracellular tangles of tau protein in the brain. It is generally thought that the interactions of Aβ oligomers with neuronal membranes are responsible for brain cell death and subsequent damage to learning and memory functions, but the exact details of the process are unclear. This work is valuable for future development of therapeutic agents and approactes to disrupt Aβ adsorption, aggregation and surface interaction on the membrane.

Read this HOT article today:

Molecular interactions of Alzheimer amyloid-β oligomers with neutral and negatively charged lipid bilayers
Xiang Yu, Qiuming Wang, Qingfen Pan, Feimeng Zhou and Jie Zheng
DOI: 10.1039/C3CP44448A

You may be interested to see our online collection of biophysics and biophysical chemistry in PCCP.

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Inclusion of atomic polarization in calculations of partitioning between water and lipid bilayers

Implicit inclusion of atomic polarization in modeling of partitioning between water and lipid bilayersJoakim Jämbeck and Alexander Lyubartsev from Stockholm University describe an effective and novel way to account for atomic polarization in simulations of the partitioning of small molecules between water and lipid bilayers.

Their approach is a useful tool for rational drug design and for understanding anesthetic and toxic action.

Read this HOT article today:

Implicit inclusion of atomic polarization in modeling of partitioning between water and lipid bilayers
Joakim P. M. Jämbeck and Alexander P. Lyubartsev
DOI: 10.1039/C3CP44472D

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More accurate modelling of electron transfer in DNA

Table of contents imageScientists using computational techniques to look at electron-transfer processes in DNA have employed a surface-hopping approach to predict the degree of charge localisation across nucleobases. The technique should allow more accurate modeling of the effects of charge transfer within the molecule.

Different computational approaches often predict varying degrees of charge delocalisation. The commonly used mean-field method often exaggerates the degree to which charge is spread out, because of the self-interaction error inherent to DFT modeling. The surface-hopping method used in this study, however, does not suffer from such difficulties and treats transitions between charge states as distinct jumps between states.

Check out the full details of this exciting article:

Efficient algorithms for the simulation of non-adiabatic electron transfer in complex molecular systems: application to DNA
Tomáš Kubař and Marcus Elstner
DOI: 10.1039/C3CP44619K

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Non-lanthanide materials for telecommunication?

Thomas Just Sørensen is a guest web-writer for PCCP. He is currently a post-doctoral researcher at the University of Copenhagen, Denmark.

Hand holiding fibreopticsTelecommunication operates primarily in three wavelength windows: 750 nm to 850 nm, 1310 nm and 1530 nm to 1560 nm; where the latter is the best as a consequence of low loss-levels and the invention of erbium signal amplifiers. Nevertheless, other carbon based materials are sought in an attempt to replace, and maybe supersede, the rare earth containing systems that are used today.
Xiaoting Liu and co-workers have in ‘New insights into two-photon absorption properties of functionalized aza-BODIPY dyes at telecommunication wavelengths: a theoretical study’ embarked on a road toward the better understanding of two-photon cross-sections. In this particular case, systems based on BODIPY dyes are under theoretical scrutiny, in attempt to find a system that can work—via two-photon absorption—in the optical windows used in telecommunication.

The fact that the direct absorption of the f–f transitions are low—typically with molar absorptivities below 1 M-1cm-1—are the reason why two-photon processes might be able to compete with absorption by lanthanide ions. The systems studied in the paper never quite reach the 1510 nm window, but do make it to 1310 nm by two-photon absorption. In fact, single photon absorption of some of the systems under investigation is found to be in the high energy/high frequency range of the telecommunication window around 800 nm.

Intrigued? For the molecular structures and much, much more see:

New insights into two-photon absorption properties of functionalized aza-BODIPY dyes at telecommunication wavelengths: a theoretical study
Xiaoting Liu, Jilong Zhang, Kai Li, Xiaobo Sun, Zhijian Wu, Aimin Ren and Jikang Feng
Phys. Chem. Chem. Phys., 2013, 15, 4666-4676
DOI: 10.1039/C3CP44435J

by Dr Thomas Just Sørensen

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Gold? Silver? Does it matter?

Thomas Just Sørensen is a guest web-writer for PCCP. He is currently a post-doctoral researcher at the University of Copenhagen, Denmark.

Figure from DOI: 10.1039/C2CP43365F The plasmons of bimetallic nanorods appear by cursory inspection to be independent of the composition! Pure gold, silver-gold-silver, pure silver, it matters not.
The ratio (length) of the nanorod, which is gold, can be varied from 0 nm to 200 nm in the 200 nm long nanorods, without changing the shape or position of the plasmonic bands. It happens to be coincidental that 200 nm long rods give this result, as the dielectric function of silver and gold are similar at the energies the plasmonic resonances are found at in 200 nm long nanorods.

A team of Korean scientist have been investigating mixed-metal nanorods, either 100 nm or 200 nm long. They find that the interfaces between the metals have little effect on the plasmonic resonances in the system. The single most important factor is the match of the dielectric function for the two metals, if the functions match the composition of the metal nanorod can be varied without any effect in the plasmons. A very interesting conclusion.

by Dr Thomas Just Sørensen

For the full details of this exciting article see:

Localized plasmon resonances of bimetallic AgAuAg nanorods
Sung-Hyun Ahn, Deok-Soo Kim, Daeha Seo, Wonjun Choi, Gi-Ra Yi, Hyunjoon Song, Q-Han Park and Zee Hwan Kim
DOI: 10.1039/C2CP43365F

This article is part of the PCCP themed collection on Optical studies of single metal nanoparticles. Check out the rest of the articles today.

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Gold nano-islands on glass

Scientists from Israel and Japan have found a simple and effective route to the fabrication of stable Au island films, which are very useful in the field of localized surface plasmon resonance (LSPR) sensing. They additionally present a detailed kinetic study of the formation of gold nano-islands from gold films and their subsequent embedding into a glass substrate during annealing, in their recent PCCP paper.

Mechanism of morphology transformation during annealing of nanostructured gold films on glass

The group used a combination of in-situ high temperature spectroscopy, high-resolution scanning electron microscopy, atomic force microscopy, cross-sectional transmission electron microscopy, and simulations using the Multiple Multipole Program approach to show that the morphological transformation of Au films proceeds via three processes exhibiting different time scales. They found that the embedding process is strongly temperature-dependent, but not dependant on the annealing atmosphere.

Discontinuous films of certain metals, such as gold, show a characteristic absorption band in the optical spectrum, attributed to excitation of localised surface plasmons, which can be influenced by the effective refractive index (RI) of the surrounding environment. This makes nanostructured metal films useful in chemical and biological sensing, as it is possible to quantify analyte binding to the metal surface by monitoring changes in the surface plasmon extinction band resulting from the local RI changes. A common problem in the preparation of reliable LSPR transducers for sensing, is poor adhesion between nanostructured Au films and substrates.

Read this HOT PCCP article today:

Mechanism of morphology transformation during annealing of nanostructured gold films on glass
Tanya Karakouz, Alexander B. Tesler, Takumi Sannomiya, Yishay Feldman, Alexander Vaskevich and Israel Rubinstein
DOI: 10.1039/C3CP50198A

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Top ten most accessed articles in January

The following articles in PCCP were the top ten most accessed in January:-

Graphene oxide for effective radionuclide removal
Anna Yu. Romanchuk, Alexander S. Slesarev, Stepan N. Kalmykov, Dmitry V. Kosynkin and James M. Tour
DOI: 10.1039/C2CP44593J

Evidence of catalyzed oxidation of Li2O2 for rechargeable Li–air battery applications
Jonathon R. Harding, Yi-Chun Lu, Yasuhiro Tsukada and Yang Shao-Horn
DOI: 10.1039/C2CP41761H

Electronic interactions and charge transfers of metal atoms and clusters on oxide surfaces
Gianfranco Pacchioni
DOI: 10.1039/C2CP43731G

Proton reduction to hydrogen in biological and chemical systems
Phong D. Tran and James Barber
DOI: 10.1039/C2CP42413D

Graphene-based electrochemical energy conversion and storage: fuel cells, supercapacitors and lithium ion batteries
Junbo Hou , Yuyan Shao, Michael W. Ellis, Robert B. Moore and Baolian Yi
DOI: 10.1039/C1CP21915D

Increasing organic solar cell efficiency with polymer interlayers
Felix Deschler, Daniel Riedel, Bernhard Ecker, Elizabeth von Hauff, Enrico Da Como and Roderick C. I. MacKenzie
DOI: 10.1039/C2CP43876C

Plasmonic photocatalysts: harvesting visible light with noble metal nanoparticles
Peng Wang, Baibiao Huang, Ying Dai and Myung-Hwan Whangbo
DOI: 10.1039/C2CP40823F

Temperature effects in dye-sensitized solar cells
Sonia R. Raga and Francisco Fabregat-Santiago
DOI: 10.1039/C2CP43220J

Persistent misconceptions regarding SERS
Martin Moskovits
DOI: 10.1039/C2CP44030J

Reversible chemical delithiation/lithiation of LiFePO4: towards a redox flow lithium-ion battery
Qizhao Huang , Hong Li , Michael Grätzel and Qing Wang
DOI: 10.1039/C2CP44466F

We hope you enjoyed reading the articles – please sign up for the free PCCP table of contents e-alerts to make sure you keep up to date with the latest research being published in the journal

On behalf of the Editorial Board of  PCCP, we invite you to submit your best research to us today!

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Understanding the fluorescence of oxazine dyes

Jos Oomens, Renato Zenobi and co-workers have investigated the structures and energetic properties of four common oxazine dyes using both experimental and theoretical approaches. The structural information obtained in the gas phase provides an important step towards an in-depth understanding of the fluorescent properties of the dyes.

The group studied Nile red, Nile blue A, cresyl violet and brilliant cresyl blue using both infrared multiple photon dissociation spectroscopy and quantum chemical calculations. Nile red is a commonly used probe for the investigation of many chemically important systems and, despite its well-characterised fluorescence in solution and widespread use, its gas-phase fluorescence has not been observed before. The group determined the true structure of the protonated fluorophore and, out of the many possible sites, they found that that the site of protonation of Nile red is at the carbonyl oxygen.

Significant differences can exist between the fluorescence properties of an isolated ion in the gas phase and its solvated counterpart. As these differences can be unpredictable, a definitive structural description of a gaseous flourophore is essential for the prediction of the associated fluorescent properties.

Read more in this PCCP article:

Infrared multiple photon dissociation (IRMPD) spectroscopy of oxazine dyes
Robert J. Nieckarz, Jos Oomens, Giel Berden, Pavel Sagulenko and Renato Zenobi
DOI: 10.1039/C3CP00158J

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2013 PCCP – Chemical Society of Japan Prizes

We are delighted to announce the winners of the 2013 PCCP Prizes for Outstanding Achievement of Young Scientists in Physical Chemistry and Chemical Physics. These were awarded to:

  • Dr Yusuke Yamauchi (National Institute for Materials Science (NIMS)) for his work on “Nano-to-Microgram Scale X-ray Crystallography of Non-crystalline Compounds Using Crystalline Sponges”
  • Dr Yasutomo Segawa (Nagoya University) for his research on “Size-selective Synthesis and Optical Properties of Carbon Nanorings”
  • Dr Yasuhide Inokuma (The University of Tokyo) for his work on “Rational Synthesis of Nanoporous Platinum Particles with Multiple Architectures toward Highly Active Electrocatalysts”
  • Photograph of Dr Yasuhide Inokuma

    Dr Yasuhide Inokuma

    Photograph of Dr Yasutomo Segawa

    Dr Yasutomo Segawa

    Photograph of Dr Yasuhide Inokuma

    Dr Yusuke Yamauchi

    Congratulations to all three prize winners who will receive a commemorative book, a PCCP Prize certificate and a financial award.

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    The influence of electron injection and charge recombination kinetics on the performance of porphyrin-sensitized solar cells

    Diau, Yeh et al. studied the effects of the 4-tert-butylpyridine (TBP) additive in the electrolyte on the performance of two different porphyrin sensitizers from both photoelectric and photophysical points of views.

    The influence of electron injection and charge recombination kinetics on the performance of porphyrin-sensitized solar cells

    The scientists from Taiwan carried out time-resolved investigations of thin-film samples using femtosecond fluorescence up-conversion spectroscopy, charge extraction and transient photoelectric measurements of the corresponding devices. The two push-pull porphyrin sensitizers, which had different anchoring groups, showed similar device performance without TBP. Upon addition of TBP, the power conversion efficiency of the device containing one dye increased, and the device containing the other decreased.

    Read more in this HOT PCCP article today:

    The influence of electron injection and charge recombination kinetics on the performance of porphyrin-sensitized solar cells: effects of the 4-tert-butylpyridine additive
    Yu-Cheng Chang, Hui-Ping Wu, Nagannagari Masi Reddy, Hsuan-Wei Lee, Hsueh-Pei Lu, Chen-Yu Yeh and Eric Wei-Guang Diau
    DOI: 10.1039/C3CP44555K

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