Archive for June, 2013

Poster prizes: Theoretical Chemistry Group Conference 2013

Luke Crawford and Martina Stella with their PCCP poster prize certificates

Luke Crawford and Martina Stella with their PCCP poster prize certificates

PCCP was delighted to sponsor prizes for the two best graduate student poster presentations at the Theoretical Chemistry Group Conference 2013, which took place 24-26 June in Nottingham.

The prizes were awarded to Martina Stella (Bristol) for her poster entitled “A simple exact density functional theory embedding scheme” and Luke Crawford (St Andrews) for a poster entitled “New DFT insights into methyl propanoate formation at a palladium centre”.

Congratulations to them both!

Keep up to date with the latest PCCP articles and news: sign up to receive our free table of contents e-alerts and follow us on twitter.

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From solvated ions to ion-pairing: a THz study of lanthanum(III) hydration

Researchers in the group of Professor Martina Havenith at the Ruhr-University Bochum have shown that terahertz spectroscopy can be used, employing meticulous physical chemical considerations, to open a window into the solvation of ions in solution. In this paper they join the discussion regarding the solvation of trivalent lanthanide ions in water, by studying lanthanum chloride and bromide at different concentrations. They determine association constants for the ion pairs and investigate the nature of the lanthanide solvation—adding the experimental support to the proponents of outer-sphere interaction between anions and trivalent lanthanide ions in solution.

Sharma and co-workers investigate the ion pairing of lanthanum halides from a true physical chemical approach. A puritan approach that to me, make this paper a pivotal example of what a PCCP paper should be. Is should not necessarily following the most recent trend, but answer or address an important question. Here, the hydration of lanthanide ions. We do not know the structure of solvation lanthanide ions, even the stoichiometry is unknown. Except for an assumption that lanthanum has nine water molecules in the ligand sphere forming a symmetrical tricapped trigonal prism, the paper attacks the question of lanthanide solvation from a refreshingly new angle.

The image attached to this post shows how well terahertz spectroscopy can describe a solution of ions. Remembering that this image is generated from several layers of a priori information, such as the behavior of neat water, simple electrolytes, solutions of alkali halides etc. I strongly recommend that you read the paper is you are interested in the rare earths, electrolytes or specific ion effects.

by Dr Thomas Just Sørensen

Read this exciting PCCP article today:

From solvated ions to ion-pairing: a THz study of lanthanum(III) hydration
Vinay Sharma, Fabian Böhm, Michael Seitz, Gerhard Schwaab and Martina Havenith
Phys. Chem. Chem. Phys. 2013, 15, 8383-8391
DOI: 10.1039/C3CP50865J

Table of contents image

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Un-solvated photophysics

When investigating dyes, we almost always address the molecular system experimentally in a solution, and theoretically in the gas phase. Greisch and co-workers circumvent this problem by doing both in condensed phases as well as the gas phase. To me, it explained a phenomenon that I have come across several times: the >1800 cm-1 shift between ab initio calculated transition energies and the observed spectra. A difference e.g. ZINDO methods is compensated for, and why these are the tinctorial chemist’s choice when predicting spectra from molecular structures. With this paper it is demonstrated that if you want to design gas phase dyes, DFT calculations can be used.

The focus of the paper is the triplet energy, triplet lifetime and triplet deactivation of rhodamine dyes, addressing their use in STED super-resolution microscopy and the triplet state mediated photodegradation. While that motivation is good, I am too excited about the gas phase fluorescence spectra and their use in benchmarking computational approaches. Emission spectra of isolated ionic dyes, can also answer some of the questions regarding counter ion effects, symmetry and solvation that has been around for half a century. I am eagerly awaiting the next installment promised at the end of this paper.

By Dr Thomas Just Sørensen

Read the full details of this PCCP paper today:

Intrinsic fluorescence properties of rhodamine cations in gas-phase: triplet lifetimes and dispersed fluorescence spectra
Jean-François Greisch, Michael E. Harding, Mattias Kordel, Wim Klopper, Manfred M. Kappes and Detlef Schooss
Phys. Chem. Chem. Phys., 2013, 15, 8162-8170
DOI: 10.1039/C3CP44362K

Table of contents image

This article is part of a collection to coincide with the theme of Bunsentagung 2013: ‘Theory meets Spectroscopy’. You may be interested in the other articles in this collection too.

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This week’s HOT articles

Take a look at these exciting articles recently published in PCCP:


A coaxial single fibre supercapacitor for energy storage
David Harrison, Fulian Qiu, John Fyson, Yanmeng Xu, Peter Evans and Darren Southee
DOI: 10.1039/C3CP52036F

A coaxial single fibre supercapacitor for energy storage


Remarks on time-dependent [current]-density functional theory for open quantum systems
Joel Yuen-Zhou and Alán Aspuru-Guzik
DOI: 10.1039/C3CP51127H

Remarks on time-dependent [current]-density functional theory for open quantum systems

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PCCP’s latest Impact Factor: 3.83

The latest citation data released by Thomson ISI reveals that PCCP’s latest Impact Factor* has risen to 3.83.

We thank all of our authors, readers and referees for their continued support of the journal.

PCCP has a large and truly international readership, which spans many communities in the broad fields of physical chemistry, chemical physics and biophysical chemistry.

With fast publication times and great author service, PCCP remains the ideal home for high-quality research.

We invite you to submit your next high-quality paper to PCCP.

*The Impact Factor provides an indication of the average number of citations per paper.  Produced annually, Impact Factors are calculated by dividing the number of citations in a year by the number of citeable articles published in the preceding two years.  Data based on 2012 Journal Citation Reports®, (Thomson Reuters, 2013).

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This week’s HOT articles

Take a look at these exciting articles recently published in PCCP:

Perspectives:

Single molecule recordings of lysozyme activity
Yongki Choi, Gregory A. Weiss and Philip G. Collins
DOI: 10.1039/C3CP51356D

Single molecule recordings of lysozyme activity

Modern surface plasmon resonance for bioanalytics and biophysics
Maxime Couture, Sandy Shuo Zhao and Jean-Francois Masson
DOI: 10.1039/C3CP50281C

Modern surface plasmon resonance for bioanalytics and biophysics

Original research:

Effect of bulky substituents on the self-assembly and mixing behavior of arylene ethynylene macrocycles at the solid/liquid interface
Lirong Xu, Liu Yang, Lili Cao, Tian Li, Shusen Chen, Dahui Zhao, Shengbin Lei and Jun Ma
DOI: 10.1039/C3CP51413G

Penicillin’s catalytic mechanism revealed by inelastic neutrons and quantum chemical theory
Zoltán Mucsi, Gregory A. Chass, Péter Ábrányi-Balogh, Balázs Jójárt, De-Cai Fang, Annibal J. Ramirez-Cuesta, Béla Viskolcz and Imre G. Csizmadia
DOI: 10.1039/C3CP50868D

Rechargeability of Li–air cathodes pre-filled with discharge products using an ether-based electrolyte solution: implications for cycle-life of Li–air cells
Stefano Meini, Nikolaos Tsiouvaras, K. Uta Schwenke, Michele Piana, Hans Beyer, Lukas Lange and Hubert A. Gasteiger
DOI: 10.1039/C3CP51112J

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New, Stable Rare Gas Molecules Predicted!

It’s no secret that I find rare gas chemistry very exciting, so when I came across this article by Jien-Lian Chen et al. I knew immediately that it would form the subject of my next blog post. The group, based in Taiwan, have performed calculations that predict a new series of rare gas molecules. Whilst this is, in itself, an exciting achievement, what really grabbed me was that they predict these molecules to be relatively stable – stable enough to be detected experimentally.

As far as I am aware, that is the holy grail of theoretical rare gas chemistry, as there is still very little experimental data on molecules of this kind. The group’s calculations were rigorous, comparing a variety of high-level computational methods and finding good agreement between them. They predicted the strength of the bonds to be significant, and examined the most likely unimolecular dissociation pathways and found sizable barriers to each of them for this class of molecule. All this adds up to a real possibility for generating some new, experimental rare gas data.

So what are these fantastic new molecules? They take the general form F–RG–BNR, where RG can be Argon, Krypton or Xenon, and R can be quite a variety of small groups. Interestingly, they found that the stability of the molecule was largely unaffected by the identity of the R group, indicating that it may be possible to study even more of them than were covered in this investigation.

All we need now is for somebody to work out how to synthesise these molecules in a spectroscopically useful environment, and perform the experiments to confirm the theoretical predictions. Experimental spectroscopists, consider the challenge issued!

By Victoria Wilton

Read the full details of this PCCP article:

Theoretical prediction of new noble-gas molecules FNgBNR (Ng = Ar, Kr, and Xe; R = H, CH3, CCH, CHCH2, F, and OH)
Jien-Lian Chen, Chang-Yu Yang, Hsiao-Jing Lin and Wei-Ping Hu
Phys. Chem. Chem. Phys., 2013, 15, 9701-9709
DOI: 10.1039/C3CP50447F

F Ar B N H

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Nernst-Haber-Bodenstein Prize 2014

Nernst-Haber-Bodenstein Prize 2014

Nomination submission deadline: 1st of October 2013

Deutsche Bunsen-Gesellschaft für Physikalische Chemie seeks nominations of candidates for the Nernst-Haber-Bodenstein Prize 2014, which is dedicated to the memory of Max Bodenstein, Fritz Haber and Walther Nernst. The prize will be awarded at the opening ceremony of the 113th General Assembly of the German Bunsen-Society for Physical Chemistry on Thursday, 29th of May 2014 in Hamburg, Germany.

The prize will be awarded to a distinguished junior scientist (of up to 40 years of age) for outstanding scientific achievements in the physical chemistry. Suitable candidates of international visibility in their research field will be evaluated by a high level expert selection panel with respect to the scientific quality, originality and independence of their research. Candidates should come from a German-speaking region of Europe or work there at the time of their nomination.

Nominations from established scientists in the area of physical chemistry should include a short CV of the candidate, an overview of the candidate’s scientific achievements, a list of the candidate’s publications, and a supporting statement.

Nominations should be submitted by 1st of October 2013 to:

Deutsche Bunsen Gesellschaft
für Physikalische Chemie e.V.
Erika Wöhler
Theodor-Heuss-Allee 25
60486 Frankfurt am Main
Germany

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Integrated microfluidic test-bed for energy conversion devices

Integrated microfluidic test-bed for energy conversion devicesA recent PCCP Communication from Segalman, Ager and co-authors has been featured in a press release by LBNL and is also featured in Azonano.

Read our blog about the article here…

Read the Communication today:

Integrated microfluidic test-bed for energy conversion devices
Miguel A. Modestino, Camilo A. Diaz-Botia, Sophia Haussener, Rafael Gomez-Sjoberg, Joel W. Ager and Rachel A. Segalman
DOI: 10.1039/C3CP51302E

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Exploring the carbon bond

Elangannam Arunan and Devendra Mani of the Indian Institute of Science have investigated an interesting C···Y bond, a “carbon bond”, which occurs when one of the hydrogen atoms of methane is replaced by an electron withdrawing group.

Weak interactions are very important in molecules of life, such as water and DNA, in supramolecular chemistry and in crystal design and engineering. Traditionally, these interactions were classified as hydrogen bonding and van der Waals interactions, but in recent decades, other weak interactions, such as halogen bonds, chalcogen bonds and pnicogen bonds, have been investigated and classified. An interesting question is whether carbon atoms can also play a role in weak interactions, in addition to the more electronegative elements known to take part.

When one of the hydrogen atoms in methane is replaced with an electron withdrawing group, such as -OH or –F, the CH3 tetrahedral face becomes a positive centre. Using NBO analysis and vibrational frequency data, Arunan and Mani showed that this positive centre could accept electron density from atoms like O in water, giving rise to a novel C···Y bond, which could be called a carbon bond.

Arunan says that given the abundance of alkyl groups in biological systems, such carbon bonding interactions could play a significant role in biology, which has yet to be recognised. “Hydrogen bonds are just sufficiently strong and can be broken and made under ambient conditions, helping life.  Carbon bonds are weak, and if they were not much of what we know about life could not be.”

For more details, read their article:

The X-C•••Y (X=O/F, Y=O/S/F/Cl/Br/N/P) ‘carbon bond’ and hydrophobic interactions
Devendra Mani and E Arunan
DOI: 10.1039/C3CP51658J

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