RSC Chemical Biology Blog

We’re pleased to announce that a new themed collection from RSC Chemical Biology has now been published online!

Read the collection

This themed collection is Guest Edited by Prof. John Spencer (University of Sussex, UK), Dr Gemma Nixon (University of Liverpool, UK), and Prof. Miraz Rahman (King’s College London, UK). It features contributions which investigate general medicinal chemistry, chemical probes for imaging, proteomics, PROTACs, fragment-based drug discovery, covalent binders, chemical tools for protein profiling and activity modulation, and natural product inspired medicinal chemistry and chemical biology.

A small selection of the articles has been provided below – please visit the link above for the full collection. All articles in RSC Chemical Biology are open access and free to read.

Editorial

Introduction to ‘Medicinal Chemistry Small Molecule Probes’
Gemma Nixon, Miraz Rahman and John Spencer
RSC. Chem. Biol., 2024, 5, DOI: 10.1039/D4CB90005G

Opinion

Chirality: a key parameter in chemical probes
Andrew McGown, Jordan Nafie, Mohammed Otayfah, Storm Hassell-Hart, Graham J. Tizzard, Simon J. Coles, Rebecca Banks, Graham P. Marsh, Hannah J. Maple, George E. Kostakis, Ilaria Proietti Silvestri, Paul Colbon and John Spencer
RSC. Chem. Biol., 2023, 4, 716–721, DOI: 10.1039/D3CB00082F

Reviews

PROTAC chemical probes for histone deacetylase enzymes
Urvashi Patel, Joshua P. Smalley and James T. Hodgkinson
RSC. Chem. Biol., 2023, 4, 623–634, DOI: 10.1039/D3CB00105A

Antitumour imidazotetrazines: past, present… and future?
Malcolm F. G. Stevens and Richard T. Wheelhouse
RSC. Chem. Biol., 2023, 4, 736–741, DOI: 10.1039/D3CB00076A

Papers and Communications

Virtual screening, identification and in vitro validation of small molecule GDP-mannose dehydrogenase inhibitors
Jonathan P. Dolan, Sanaz Ahmadipour, Alice J. C. Wahart, Aisling Ní Cheallaigh, Suat Sari, Chatchakorn Eurtivong, Marcelo A. Lima, Mark A. Skidmore, Konstantin P. Volcho, Jóhannes Reynisson, Robert A. Field and Gavin J. Miller
RSC. Chem. Biol., 2023, 4, 865–870, DOI: 10.1039/D3CB00126A

A cell-permeable probe for the labelling of a bacterial glycosyltransferase and virulence factor
Yong Xu and Gerd K. Wagner
RSC. Chem. Biol., 2024, 5, 55–62, DOI: 10.1039/D3CB00092C

We hope you enjoy this new themed collection from RSC Chemical Biology.

We’re pleased to announce that the second annual RSC Chemical Biology Emerging Investigators collection has now been published online!

READ THE COLLECTION 

This collection highlights the work of outstanding early career researchers from across the chemical biology community. We’ve provided links to just a few of these articles and the summary Profile below – be sure to visit the collection to read the rest!. All articles in RSC Chemical Biology are open access and free to read.

If you would like to nominate a colleague or yourself as an Emerging Investigator for our next collection, please contact us for further details. Emerging Investigators must be group leaders or principal investigators in the first 10 years of their independent career.

Profile

Contributors to the 2023 RSC Chemical Biology Emerging Investigators Collection

RSC. Chem. Biol., 2024, DOI: 10.1039/D4CB90013H

Communications

Biosynthesis of the fungal nonribosomal peptide penilumamide A and biochemical characterization of a pterin-specific adenylation domain

Stephanie C. Heard, Katharine L. Diehl and Jaclyn M. Winter

RSC. Chem. Biol., 2023, 4, 748–753, DOI: 10.1039/D3CB00088E

BrainBike peptidomimetic enables efficient transport of proteins across brain endothelium

Maria C. Lucana, Roberta Lucchi, Fabien Gosselet, Cristina Díaz-Perlas and Benjamí Oller-Salvia

RSC Chem. Biol., 2024, 5, 7–11, DOI: 10.1039/D3CB00194F

Papers 

Methylated guanosine and uridine modifications in S. cerevisiae mRNAs modulate translation elongation

Joshua D. Jones, Monika K. Franco, Tyler J. Smith, Laura R. Snyder, Anna G. Anders, Brandon T. Ruotolo, Robert T. Kennedy and Kristin S. Koutmou

RSC. Chem. Biol., 2023, 4, 363–378, DOI: 10.1039/D2CB00229A

Click’n lock: rapid exchange between unsymmetric tetrazines and thiols for reversible, chemoselective functionalisation of biomolecules with on-demand bioorthogonal locking

Katerina Gavriel, Dustin C. A. van Doeselaar, Daniëlle W. T. Geers and Kevin Neumann

RSC. Chem. Biol., 2023, 4, 685–691, DOI: 10.1039/D3CB00062A

In addition to the researchers highlighted in our Profile article above, we’re pleased to feature this further contribution from Prof. Denise Okafor.

Denise Okafor is an assistant professor in the Departments of Biochemistry and Molecular Biology (BMB) and Chemistry at Pennsylvania State University. She received a B.S. in Biomedical chemistry from Oral Roberts University, followed by M.S. and Ph.D degrees in Chemistry from the Georgia Institute of Technology. As an NIH-IRACDA postdoctoral fellow at Emory University School of Medicine, she used molecular dynamics simulations to study ligand regulation and functional evolution in nuclear receptors. She began her independent career in 2020. Her lab combines MD simulations with biochemical experiments to understand mechanisms of transcriptional activation in nuclear receptors.

Read Prof. Okafor’s contribution below:

Ancient and modern mechanisms compete in progesterone receptor activation

RSC. Chem. Biol., 2024, 5,  DOI: 10.1039/D4CB00002A

We’re pleased to announce that a new themed collection from RSC Chemical Biology has now been published online.

Read the collection here

This themed collection, guest edited by Ralph Kleiner (Princeton University, USA), Claudia Höbartner (University of Würzburg, Germany) and Guifang Jia (Peking University, China), presents articles in the field of epitranscriptomics, delving into the exploration of non-canonical ribonucleotides in biology. Taken together, we hope that readers will find this small sampling of epitranscriptomic research, showcasing recent directions in the field, to be a stimulating and thought-provoking entry point for further reading and study.

The article line-up is shared below. We’re pleased to also feature a selection of epitranscriptomics articles published in RSC Chemical Biology before and after the collection was organised. All articles in RSC Chemical Biology are open access and free to read.

Editorial

Introduction to ‘The Epitranscriptome’

Ralph Kleiner, Claudia Höbartner and Guifang Jia

RSC. Chem. Biol., 2024, 5, DOI: 10.1039/D4CB90006E

Papers

Nucleoside analogs in ADAR guide strands targeting 5′-UA̲ sites

Hannah F. Brinkman, Victorio Jauregui Matos, Herra G. Mendoza, Erin E. Doherty and Peter A. Beal

RSC. Chem. Biol., 2023, 4, 74–83, DOI: 10.1039/D2CB00165A

Arabidopsis thaliana NudiXes have RNA-decapping activity

Maria-Bianca Mititelu, Oldřich Hudeček, Agnieszka Gozdek, Roberto Benoni, Ondřej Nešuta, Szymon Krasnodębski, Joanna Kufel and Hana Cahová

RSC. Chem. Biol., 2023, 4, 223–228, DOI: 10.1039/D2CB00213B

Temporal resolution of NAIL-MS of tRNA, rRNA and Poly-A RNA is overcome by actinomycin D

Authors

RSC. Chem. Biol., 2023, 4, 354–362, DOI: 10.1039/D2CB00243D

Advantages and challenges associated with bisulfite-assisted nanopore direct RNA sequencing for modifications

Aaron M. Fleming, Judy Zhu, Vilhelmina K. Done and Cynthia J. Burrows

RSC. Chem. Biol., 2023, 4, 952–964, DOI: 10.1039/D3CB00081H

Additional Papers

Methylated guanosine and uridine modifications in S. cerevisiae mRNAs modulate translation elongation

Joshua D. Jones, Monika K. Franco, Tyler J. Smith, Laura R. Snyder, Anna G. Anders, Brandon T. Ruotolo, Robert T. Kennedy and Kristin S. Koutmou

RSC. Chem. Biol., 2023, 4, 363–378, DOI:10.1039/D2CB00229A

N⁴-Allylcytidine: a new nucleoside analogue for RNA labelling and chemical sequencing

Tengwei Li, Xiao Shu, Minsong Gao, Chenyang Huang, Ting Li, Jie Cao, Xiner Ying, Donghong Liu and Jianzhao Liu

RSC. Chem. Biol., 2024, 5, DOI: 10.1039/D3CB00189J

Reversible oxidative dimerization of 4-thiouridines in tRNA isolates

Larissa Bessler, Jonathan Groß, Christopher J. Kampf, Till Opatz and Mark Helm

RSC. Chem. Biol., 2024, 5, DOI: 10.1039/D3CB00221G

We hope you enjoy this new themed collection from RSC Chemical Biology.

We’re pleased to announce that a new themed collection from RSC Chemical Biology has now been published online.

READ THE COLLECTION 

This themed collection, guest edited by Michelle Arkin (University of California San Francisco, USA), Luc Brunsveld (TU Eindhoven, Netherlands), and Eric Fischer (Dana-Farber Cancer Institute and Harvard Medical School, USA), encompasses the wide scope of molecular glues. Topics include protein degradation glues, protein binders and stabilizers, bi-functional molecules for protein degradation and beyond with a particular interest on molecular recognition.

The articles in this collection are listed below. All articles in RSC Chemical Biology are open access and free to read.

REVIEWS

Protein–protein interfaces in molecular glue-induced ternary complexes: classification, characterization, and prediction

Huan Rui, Kate S. Ashton, Jaeki Min, Connie Wang and Patrick Ryan Potts

RSC. Chem. Biol., 2023, 4, 192–215, DOI: 10.1039/D2CB00207H

Bringing enzymes to the proximity party

Gabrielle S. Tender and Carolyn R. Bertozzi

RSC. Chem. Biol., 2023, 4, 986–1002, DOI: 10.1039/D3CB00084B

PAPERS 

Accessing three-branched high-affinity cereblon ligands for molecular glue and protein degrader design

Robert Kuchta, Christopher Heim, Alexander Herrmann, Samuel Maiwald, Yuen Lam Dora Ng, Izidor Sosič, Tim Keuler, Jan Krönke, Michael Gütschow, Marcus D. Hartmann and Christian Steinebach

RSC. Chem. Biol., 2023, 4, 229–234, DOI: 10.1039/D2CB00223J

Straightforward model construction and analysis of multicomponent biomolecular systems in equilibrium

Nick H. J. Geertjens, Pim J. de Vink, Tim Wezeman, Albert J. Markvoort and Luc Brunsveld

RSC. Chem. Biol., 2023, 4, 252–260, DOI: 10.1039/D2CB00211F

A model-informed method to retrieve intrinsic from apparent cooperativity and project cellular target occupancy for ternary complex-forming compounds

Richard R. Stein, Marianne Fouché, Jeffrey D. Kearns and Hans-Joerg Roth

RSC. Chem. Biol., 2023, 4, 512–523, DOI: 10.1039/D2CB00216G

Bind&Bite: covalently stabilized heterodimeric coiled-coil peptides for the site-selective, cysteine-free chemical modification of proteins

Jannis Beutel, Pierre Tannig, Riccardo Di Vincenzo, Thomas Schumacher, Klaus Überla and Jutta Eichler

RSC. Chem. Biol., 2023, 4, 794–803, DOI: 10.1039/D3CB00122A

We hope you enjoy this new themed collection from RSC Chemical Biology.

RSC Chemical Biology is pleased to partner with the 1st FERROPTOSIS FRANCE SYMPOSIUM on January 26, 2024. The symposium features renowned speakers, presenting the latest developments and future trends in the field of ferroptosis.

For full details, visit https://www.ferroptosisfrance.fr/. Registrations extended until 19/01/1024. Hurry!

Register at https://www.ferroptosisfrance.fr/tickets

Welcome to the team Sander!

We’re excited to introduce Sander van Kasteren as our new Associate Editor. His ground-breaking work in chemistry and immunology brings a wealth of expertise and innovation to our editorial team.

Bridging Chemistry and Immunology

Sander’s research connects the dots between chemistry and immunology, focusing on understanding early immune reactions. His innovative methods for studying antigen presentation and T-cell activation are making waves in the scientific community.

Academic Journey

Starting as an organic chemistry student in Edinburgh, Sander’s journey led him to Oxford and the lab of Prof Benjamin G. Davis. There, he contributed to MRI and histological probes for detecting early brain inflammation. His expertise grew under Prof Colin Watts in Dundee, where he worked on protease inhibitors for better antigen cross-presentation.

Leadership and Recognition

In 2012, Sander founded his own group at Leiden University and later joined the Institute of Chemical Immunology, where he’s a board member. His remarkable contributions have earned him fellowships, grants, and awards, including the 2012 Early Career Investigator Award from the British Biochemical Society.

Associate Editor Role for RSC Chemical Biology

Now, Sander van Kasteren takes on a new role as our Associate Editor, bringing his expertise to our publication. We’re thrilled to welcome him and look forward to the valuable insights he’ll bring to our community.

RSC Chemical Biology is now indexed in the Directory of Open Access Journals (DOAJ), PubMed Central, Scopus and Web of Science: Emerging Sources Citation Index.  Find out more about the journal and submit your work at rsc.li/rsc-chembio

RSC Chemical Biology

Royal Society of Chemistry

www.rsc.org

Join us to celebrate the Outstanding Paper Award winners of 2022!

The team at RSC Chemical Biology are delighted to invite you to our upcoming webinar to celebrate the winner of our Outstanding Paper Award from 2022. The winner is Professor Craig Crews, of Yale University, for their paper “OligoTRAFTACs: A generalizable method for transcription factor degradation”.

The webinar, scheduled to last for one hour, will feature a presentation from the group of Professor Craig Crews discussing their work, and this will be followed by a presentation from Professor Michelle Arkin, an Editorial Board Member for RSC Chemical Biology, highlighting some ongoing work in her group at the University of California, San Francisco.

This event is being held online through Zoom and is completely free to attend. It will be held on Tuesday 21^st November at 17:00 GMT. You can find more information on our Event Page and can register for the event here.

We look forward to seeing you at the webinar!