Archive for September, 2013

Intracellular enzymatic activity by SERRS

Analysis of intracellular enzyme activity by SERS

Enzymatic activity in cells has been revealed by surface enhanced Raman scattering (SERRS) spectroscopic studies, according to new research led by Duncan Graham at the University of Strathclyde.

X-Gal, a SERRS inactive precursor and a common marker for galactosidase enzymes, was introduced to macrophage cells along with metal nanoparticles. On incubation, enzymatic activity of galactosidase on X-Gal produces a SERRS active trans-alkene dimerised product. This product adsorbs onto the delivered citrate capped gold nanoparticles producing a distinctive SERRS signal. Using SERRS mapping to evaluate the formation of this product, enzyme activity was assessed, not only across a cell population, but also at sub-cellular levels. The authors note that the SERRS activity in this study may not reflect the only sites of galactosidase activity, but rather the sites where both galactosidase and the nanoparticles are co-located. Nevertheless, approaches towards sub-cellular analysis of enzyme activity are important.

Advances in targeted nanoparticle uptake combined with the multiplexing capability of SERRS make this an interesting approach to sub-cellular studies of biochemical activity.

To read the full article, please click on the link below. This paper will be free to read until October 18th.

Analysis of intracellular enzyme activity by surface enhanced Raman scattering
Ross Stevenson, Sarah McAughtrie, Laura Senior, Robert J. Stokes, Helen McGachy, Laurence Tetley, Paola Nativo, James M. Brewer, James Alexander, Karen Faulds and   Duncan Graham
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN00729D

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HOT Articles in Analyst

Take a look at these new HOT articles just published in Analyst! These papers will be free to read for the next three weeks. Download them today!

The global identification of tRNA isoacceptors by targeted tandem mass spectrometry
Collin Wetzel and Patrick A. Limbach  
Analyst, 2013,138, 6063-6072
DOI: 10.1039/C3AN01224G

Extraction and separation of proteins by ionic liquid aqueous two-phase system
Xiao Lin, Yuzhi Wang, Qun Zeng, Xueqin Ding and Jing Chen  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01301D

A smart T1-weighted MRI contrast agent for uranyl cations based on a DNAzyme–gadolinium conjugate
Weichen Xu, Hang Xing and Yi Lu  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01182H

Improved analysis of oligosaccharides for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using aminopyrazine as a derivatization reagent and a co-matrix
Yan Cai, Ying Zhang, Pengyuan Yang and Haojie Lu
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01228J

A chemical quenching- and physical blocking-based method to minimize process-mediated aggregation of antibody-crosslinked nanoparticles for imaging application
Chandra K. Dixit, Shibsekhar Roy, Conor Byrne, Richard O’Kennedy and Colette McDonagh  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01294H

Exploring the electrochemical performance of graphitic paste electrodes: graphene vs. graphite
Luiz C. S. Figueiredo-Filho, Dale A. C. Brownson, Maria Gómez-Mingot, Jesús Iniesta, Orlando Fatibello-Filho and Craig E. Banks  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN00950E

An investigation into the simultaneous enzymatic and SERRS properties of silver nanoparticles
Kristy S. McKeating, Sian Sloan-Dennison, Duncan Graham and Karen Faulds  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01451G

Electrochemical piezoelectric-excited millimeter-sized cantilever (ePEMC) for simultaneous dual transduction biosensing
Blake N. Johnson and Raj Mutharasan  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01353G

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Bacteria incriminated by their odour

Researchers in Taiwan and the US have developed a device that uses the volatile organic compounds released by bacteria to identify the bacteria as they are cultured. When fully developed, this single-step gadget could trump the speed of current clinical techniques.

Sepsis and other bloodstream infections are very dangerous and need immediate treatment. It is therefore essential to detect microorganisms in human blood quickly to decide the most effective treatment.

Blood cultures are currently used to detect if bacteria are present in a patient’s blood. This takes 24 hours or more just to reveal if a sample contains bacteria. Further tests reveal the identity of the bacteria and show which antibiotics can kill them. This multi-step process can take several days, and in the meantime patients are often treated with antibiotics presumptively, which can induce side effects in the patient as well as antibiotic resistance in the bacteria.

Chemometric analysis of colour changes reveals which strain of bacteria is present

 To read the full article, please visit Chemistry World.

Single step, rapid identification of pathogenic microorganisms in a culture bottle
Yu W. Chu, Bo Y. Wang, David A. Engebretson and James R. Carey  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01175E

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A biochemical eyewitness

Blood found at a crime scene could give police an indication of a criminal suspect’s ethnicity there and then thanks to a new bioassay.

Biological samples recovered at crime scenes can provide vital evidence to identify, accuse and exonerate. DNA/RNA analysis techniques for profiling suspects are sophisticated, but usually require complex equipment. On-site analysis of fluids is mostly limited to simple identification of possible samples, such as bloodstains, which are then collected and transported to specialist laboratories. This creates undesirable delays for investigations, where time is often of the essence.

To read the full article, please visit Chemistry World.

Biocatalytic analysis of biomarkers for forensic identification of ethnicity between Caucasian and African American groups
Friederike Kramer, Lenka Halámková, Arshak Poghossian, Michael J. Schöning, Evgeny Katz and Jan Halámek  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01062G

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HOT Articles in Analyst

Take a look at these new HOT articles just published in Analyst! These papers will be free to read for the next two weeks. Click on the links below:

A new turn-on fluorescent chemosensor based on diketopyrrolopyrrole (DPP) for imaging Zn2+ in living cells
Guanjun Zhang, Haiying Li, Shiming Bi, Longfeng Song, Yunxiang Lu, Liang Zhang, Jianjun Yu and Limin Wang  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN00873H

Separation of metalloproteins using a novel metal ion contaminant sweeping technique and detection of protein-bound copper by a metal ion probe in polyacrylamide gel electrophoresis: distribution of copper in human serum
Shingo Saito, Mitsuyoshi Kawashima, Hiroki Ohshima, Kazuki Enomoto, Makoto Sato, Hajime Yoshimura, Keitaro Yoshimoto, Mizuo Maedad and Masami Shibukawaa  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01107K

High pressure nanoelectrospray ionization mass spectrometry for analysis of aqueous solutions
Md. Matiur Rahman, Mridul Kanti Mandal, Kenzo Hiraoka and Lee Chuin Chen 
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN00699A

Introducing novel amorphous carbon nanoparticles as energy acceptors into a chemiluminescence resonance energy transfer immunoassay system
Zhenxing Wang, Hongfei Gao and Zhifeng Fu 
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01177A

The global identification of tRNA isoacceptors by targeted tandem mass spectrometry
Collin Wetzel and Patrick A. Limbach 
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01224G

Enhanced imaging of developed fingerprints using mass spectrometry imaging
M. J. Bailey, M. Ismail, S. Bleay, N. Bright, M. Levin Elad, Y. Cohen, B. Geller, D. Everson, C. Costa, R. P. Webb, J. F. Watts and M. de Puit  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01204B

Photonic crystal enhanced microscopy for imaging of live cell adhesion
Weili Chen, Kenneth D. Long, Meng Lu, Vikram Chaudhery, Hojeong Yu, Ji Sun Choi, James Polans, Yue Zhuo, Brendan A. C. Harley and   Brian T. Cunningham  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01541F

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Advances in GC IV, Cheshire

Advances in GC IV
30th October 2013 (First Announcement)
LGC Ltd, The Heath Business Park, Runcorn, Cheshire

Joint meeting organised by The Chromatographic Society and the North West Region of the Analytical Division of the Royal Society of Chemistry.

After the success of the 2011 meeting we are pleased to announce another follow up meeting in the series.
GC is still technique of choice for analysing both volatile and semi volatile compounds, but as we move to more difficult matrices, more is being asked of the technique in terms of separation and limits of detection. The meeting sets out to both give an overview of current GC technologies and methodologies, information on newer detection/separation solutions and case studies from all the main user areas.
 
In parallel to the full meeting program will be an Instrument exhibition with representatives from all the major GC Instrument and Consumables Suppliers.
 
For more information please contact Alan Handley.
Tel 01928 513681

Mobile 07917416529
E-mail: alan.handley@lgcgroup.com
 
Advances in GC IV – Topics and Speakers

09:15- 09:50        Registration ,Coffee and Exhibition
 
09:50-10:00         Opening and Welcome
                              Alan Handley (LGC Ltd)
 
10:00-10:40         Sample Preparation solutions for Gas Chromatography
                               Ray Perkins (Anatune)
 
10:40-11:20         Column Selection – there more to life than a boiling point column
                               Jaap de Zeeuw (Restek)
                                               
11:20 –12:00       Demystifying Comprehensive GC
                               Prof Jean-Francois Focant (University of Liege)
 
Exhibition and Lunch
 
14:00 -14:40        A fresh approach to managing GC in your Laboratory
                               Greg Johnson (Thermo Fisher)
 
14:40 – 15:20       Exploring the extra dimension – Getting more out of your GC Analysis
                                Ken Brady (Agilent)
 
15:20 – 15:35       Coffee
 
15:35 – 16:05       What has Deconvolution ever done for us?
                                Neil Owen (Givaudan UK Ltd)
                                                               
16:05 – 16:35       Are GC techniques comparable to the human nose?
                                Lewis Jones (Mars Waltham)
 
16:35                     Close of meeting
 
Registration (Includes all sessions, exhibition and lunch)
 
Members of either The Chromatographic Society, RSC or BMSS                 £60
 
Non Members                                                                                                          £80
 
Students* and Retired                                                                                            £10
*Student bursaries for travel are available please contact Alan Handley

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A Competitive Binding Scheme for Cancer Cells

Ultrasensitive electrochemical detection of leukemia cells

Detecting cancerous cells, such as those of leukemia, in early stages can greatly affect patient treatment and survival. Current diagnostic tools such as immunohistochemistry require large concentrations of cells, which occur in advanced stages of the disease.

Jun-Jie Zhu and co-workers at Nanjing University , China, developed an assay for leukemia cells using aptamers in a unique, competition-based electrochemical sensor. This involves the use of magnetic (Fe3O4) and gold nanoparticles and the detection of electrochemical signals from deposited silver nanoparticles using square wave anodic stripping voltammetery. The gold nanoparticles bind to the much larger magnetic particles through an apatmer, but the apatmer has a higher specificity for the leukemia cells. Upon introduction of the cells, some of the gold nanoparticles are released from the magnetic surface affecting the amount of detectable signal from the silver. The researchers successfully detected as few as 10 cells and demonstrated a high specificity of the aptamers for only one type of leukemia cells. Although they chose leukemia cells, the only limitation is the specificity of aptamers available and ideally, any cancer could be tested for in this system.

To read the full article, please access the link below. This paper will be free to read for the next three weeks.

A novel aptamer-based competition strategy for ultrasensitive electrochemical detection of leukemia cells
Kui Zhang, Tingting Tan, Jia-Ju Fu, Tingting Zheng and   Jun-Jie Zhu
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01255G

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Use Your Eyes: A simple test for E. Coli

Detection of E. coli in Ringer's solution

Detection of E. coli in Ringer's solution

Sophisticated analytical tests producing a readout which can be interpreted by the naked eye, or by image editing software, are becoming increasingly popular.  They offer a low cost alternative to tests requiring expensive equipment and highly trained analysts. Jürgen Popp and colleagues from the Friedrich Schiller University and the Institute of Photonic Technology in Jena, Germany, have developed a new detection method for DNA which provides a distinctive colour change in the case of a positive result.

The bacterial contamination of intravenous fluids in hospitals is a significant concern in modern medicine, so Popp and his team chose the detection of E. Coli in Ringer’s solution as the first test for their assay. The technique uses surface-modified magnetic beads which can bind complementary target DNA by hybridisation. A silver deposition kit provides the visual colour change: for a positive result, silver nanoparticles are generated by enzymatic silver deposition, turning the sample black. As well as being an inexpensive and convenient qualitative test, a quantitative result can be found by analysing a digital photograph of the colour change in standard image editing software.

To read the full article, please cick on the link below. The paper will be free to read for the next three weeks.

Convenient detection of E. coli in Ringer’s solution
Martha Schwarz, Susanne Pahlow, Thomas Bocklitz, Carolin Steinbrücker, Dana Cialla, Karina Weber and Jürgen Popp
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01240A

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BODIPY-Based Probe for HClO Imaging: Resolving the Paradox of Detection?

BODIPY-Based Probe for HClO Imaging

BODIPY-Based Probe for HClO Imaging

Detection of suitable biomarkers of disease is critical for medical diagnosis. However, detection becomes a paradoxical challenge when the biomarker is naturally found in healthy individuals. This is the case for the biomarker hypochlorous acid (HClO), a reactive oxygen species that plays an essential role in maintaining a healthy immune system under normal conditions. Yet, when optimal levels of HClO cannot be maintained by the body, cellular functions become disrupted and this can result in diseases such as atherosclerosis, arthritis, and cancer. Consequently, HClO requires medical monitoring, particularly in the mitochondria where a high concentration tends to reside. To help distinguish between healthy and diseased states, the ideal biosensor must provide fast response, high selectivity, high sensitivity and mitochondrial permeability.

To address this challenge, Xiaojun Peng and colleagues from the Dalian University of Technology in China have created a fluorescent imaging probe to detect HClO by localizing to mitochondria in live cells. Their probe makes use of boron dipyrromethene (BODIPY) dye for its outstanding fluorescent properties. Incorporation of an oxime group onto the BODIPY scaffold allows the tuning of fluorescence to an on/off state depending on the presence/absence of HClO, respectively. Lastly, incorporation of a triphenylphosphine group onto BODIPY provides the localization signal to the mitochondria. Learn all the details of this exciting new discovery by accessing the link below:

 

A highly specific BODIPY-based probe localized in mitochondria for HClO imaging
Guanghui Cheng, Jiangli Fan, Wen Sun, Kun Sui, Xin Jin, Jingyun Wang and   Xiaojun Peng  
Analyst, 2013, Advance Article
DOI: 10.1039/C3AN01152F

This pap[er will be free to read for the next three weeks. Let us know what your thoughts are by leaving a comment!

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