Archive for September, 2011

The next generation of foldamers

Scientists in Germany have reported a novel foldamer structure based on perylene bisimide (PBI) dyes and rigid oligophenylene ethynylene (OPE) backbones. The work was born out of the desire to create a well-defined macromolecular framework with predictable geometries. The group, from the University of Würzburg and lead by Frank Würthner, designed an OPE-fused PBI oligomer in which the π-π interactions between the molecules of PBI direct the folding geometry. 

Graphical abstract: Foldamer with a spiral perylene bisimide staircase aggregate structureWhile the influence of π-π interactions on systems which fold into highly ordered structures, or foldamers, has been previously studied, the system designed by Würthner and his team is unique in that the rigid OPE backbone played no part in directing the folding geometry; π-π interactions in the PBI units were the sole influence on the backbone conformation and lead to the final geometry. 

A typical OPE-fused PBI oligomer was found to contain between 8 and 9 PBI units, as determined by gel permeation chromatography and diffusion NMR. Further studies using MALDI-TOF ruled out impurities or side production in the oligomer. With this structural data in hand, they used UV-vis spectroscopy to prove that only the PBI, not the OPE, units participated in π-π stacking; a feature that is unique to their oligomer system. The authors then proved, through a series of elegant UV-vis analyses in chloroform and methylcyclohexane, that the oligomer was able to fold and unfold with changes in solvent polarity. These conclusions were also supported by molecular modeling studies. 

The PBI oligomer reported in this work, in which the OPE backbone does not play a role in π-π stacking, resembles interactions in nucleic acids. Therefore, this system could be an ideal mimic for functional biological systems such as DNA or may also prove to have very interesting photophysical properties.

Find out more by downloading Würthner’s Edge article.

Posted on behalf of Patricia Pantos, Chemical Science web writer.

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Domino diastereoselectivity

Huw Davies’ group have developed a domino sequence for the asymmetric synthesis of highly functionalised cyclopentanes.

The researchers from Emory University have combined scandium catalysis with a previously reported asymmetric rhodium-catalysed dienol formation to afford cyclopentanes in good to excellent levels of enantioselectivity. Four new stereogenic centres are formed in the reaction sequence and the cyclopentane products are obtained as single diastereoisomers.

domino sequence for the asymmetric synthesis of highly functionalised cyclopentanes

The one-pot procedure commences with a tandem oxygen ylide formation and [2,3] sigmatropic rearrangement between racemic allyl alcohol 1 and vinyl diazoacetate 2, resulting in formation of chiral dienol 4. Upon heating, an oxy-Cope rearrangement provides enol 5 in quantitative yield albeit with slight erosion of enantiomeric excess. Subsequent tautomerisation yields ketone 6, which is primed for a scandium triflate-catalysed carbonyl ene reaction on elevation of temperature, affording the cyclopentane product.

The impressive diastereoselectivity of this reaction combined with the complexity of the enantioenriched cyclopentane products highlights the synthetic power of reactive metal carbenoids in such thoughtfully designed reaction sequences. Download Davies’ Edge article to find out more.

Researcher’s perspective:
“The discovery of new carbenoid reactions is always an exciting time: often the products generated are high energy and capable of further transformations. Needless to say, it was thrilling the first time the crude NMR indicated the domino sequence was viable.” Brendan Parr, from the Davies group

 Posted on behalf of Alice E. Williamson, Chemical Science web writer.

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ACS Denver – making chemical connections

On Tuesday I met up with Chem Soc Rev editorial board member Huw Davies and the speakers from the young academic investigator session he organised. It was a really great session, with 16 of the best emerging investigators in organic chemistry showcasing their recent, and very impressive, research. They included Zachary Ball and Neil Garg, both of whom have recently published in Chem Sci (see Proximity-driven metallopeptide catalysis: Remarkable side-chain scope enables modification of the Fos bZip domain and Nickel-catalyzed amination of aryl carbamates and sequential site-selective cross-couplings). We all went out for dinner after the session then on to a bar which claimed to have the world’s largest selection of draft beer – no wonder we found lots of other conference delegates in there!

I also attended some of the inorganic nanoscience award symposium in honour of Catherine Murphy, one of ChemComm‘s advisory editorial board members. I was treated to a double dose of Northwestern excellence, first from Chad Mirkin then Chemical Science associate editor Teri Odom. You can find out about Teri’s work in her recent Chem Sci Perspective.

Wednesday was another great day. I met up with Haw Yang, another Chemical Science associate editor and had lunch with Michel Orrit and Johan Hofkens, whom I had met previously at ISACS2 and ISACS5 respectively. They’ve both published exceptional articles in Chem Sci (see Detection limits in photothermal microscopy; DNA fluorocode: A single molecule, optical map of DNA with nanometre resolution; Fluorescent probes for superresolution imaging of lipid domains on the plasma membrane).

One of my highlights in the afternoon was Byron Purse‘s talk on unusually stable encapsulation complexes. By assembling pyrogallolarene hexamers under thermal conditions in the absence of solvent, he found he could efficiently load guest molecules, producing kinetically trapped assemblies.

My time in Denver ended on a high as Duncan Graham, Chem Sci advisory board member, signed me in to the exclusive airport lounge where I sipped sparkling wine in the company of high-flying chemists. Proof that who you know as well as what you know counts in chemistry!

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Tying knots in molecules

UK researchers have embarked upon a new method to create structurally diverse molecules for drug discovery.

Finding new lead compounds for drug discovery is a formidable challenge which has traditionally relied on natural product isolation and combinatorial chemistry. Despite significant investment in combinatorial chemistry, this approach has found very limited success due to a lack of chirality and structural rigidity in the compounds produced. To tackle this problem, chemists are using diversity orientated synthesis (DOS) which aims to produce compounds that are structurally diverse in shape and stereochemistry and also in functionality.

Robert Stockman from the University of Nottingham and his team have pioneered an approach that combines two-directional synthesis with tandem reactions as a tool for DOS. The starting material is a simple trifunctional, linear molecule that can be folded back on itself in a number of ways to produce a wide range of structures – like tying knots in a piece of rope.

12 products are synthesised from one molecule by combining two-directional synthesis and tandem reactions

The researchers were able to create twelve natural product-like structures from only one compound, in just fifteen reactions. Stockman and his team found that a number of compounds derived from one of the products were effective against cancer cell lines, proving that compounds synthesised by this approach are promising candidates for use in new medicines.

To find out more, watch Dr Stockman’s video and download the Chemical Science Edge article.

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