Archive for the ‘News’ Category

Chemical Biology and Medicinal: Synthesis of a selective inhibitor of a fucose binding bacterial lectin from Burkholderia ambifaria

Pathogen-associated lectins are considered to be attractive targets for the development of antiadhesive drugs. It is of great importance to design sugar-based derivatives able to selectively bind to specific pathogen-associated lectins with the aim of fighting bacterial infections without interfering with human lectins involved in physiological processes. 

Graphical Abstract

The stereoselective synthesis of the new fucose-based derivative 1, as the first example of glycomimetic selectively recognized by the fucose-binding lectin BambL from Burkholderia ambifaria is described.

Scientists in Italy report the first example of a synthetic ligand able to selectively bind, in the micromolar range, the pathogen-lectin BambL. BambL is a fucose-specific lectin from Burkholderia ambifaria, a bacterium member of the Burkholderia cepacia complex (BCC), a closely related group of Gram-negative bacteria responsible for cepacia syndrome in immunocompromised patients.

The fucose-based mimetic is therefore a promising candidate for the development of antibacterial agents against infection by B. ambifaria.

Synthesis of a selective inhibitor of a fucose binding bacterial lectin from Burkholderia ambifaria
Barbara Richichi, A Imberty, Emilie Gillon, Rosa Bosco, Ieva Sutkeviciute, Franck Fieschi and  Cristina Nativi  
Org. Biomol. Chem., 2013, Accepted Manuscript
DOI: 10.1039/C3OB40520F

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Bursary opportunity for final year PhD students and postdocs to attend the Sao Paulo Advanced School Bioorganic Chemistry

The RSC is delighted to announce a fantastic bursary opportunity for PhD students/post docs to attend the Advanced School Bioorganic Chemistry taking place in Araraquara, Brazil, 30 June – 05 July 2013. The school includes talks and discussion sessions from highly qualified scientists (including Professor Steven V. Ley from the University of Cambridge) and leaders in the field covering bioorganic chemistry, involving aspects of natural products, medicinal chemistry, synthesis and spectroscopic methods.  The full programme can be viewed here: http://www.bioorgchemespca.iq.unesp.br/nodes/view/program

FAPESP (Sao Paulo Research Foundation) have invited the RSC to select 2 UK students to participate in the meeting. The bursary will cover international and domestic transportation, hotel accommodation, meals, registration fee and welcome reception. To apply please complete the form which is available download here and at the end of this post. Return to science@rsc.org by 19 April 2013 at 4pm.

Sao Paulo Advanced School in Bioorganic Chemistry

Closing date for application is 4pm on 19 April 2013
 
For any queries please contact science@rsc.org

Application Form for the Advanced School Bioorganic Chemistry

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Organic: By-product of Teflon manufacture used to generate compounds for medicinal, agrichemical and materials sciences

Scientists in Japan have used a by-product of Teflon manufacture to generate carbonyl compounds with trifluoromethyl groups. Organic molecules bearing a trifluoromethyl group have received much attention because of their unique physical and chemical properties, which are important in the fields of medicinal, agrichemical and materials sciences, say the researchers. Efficient ways of introducing CF3 groups into target molecules are being sought. The nucleophilic trifluoromethylation of carbonyl compounds using a Ruppert–Prakash reagent – (trifluoromethyl)trimethylsilane – is a well-explored strategy. But, (trifluoromethyl)trimethylsilane is expensive to prepare and is prepared from ozone-depleting bromotrifluoromethane. Fluoroform – a by-product of Teflon manufacture – has emerged as a potential environmentally benign alternative to (trifluoromethyl)trimethylsilane. It is also non-toxic, cheap and available in large quantities.

Graphical Abstract

A sterically demanding organo-superbase avoids decomposition of a naked trifluoromethyl carbanion directly generated from fluoroform
Hiroyuki Kawai, Zhe Yuan, Etsuko Tokunaga and Norio Shibata
Org. Biomol. Chem., 2013,
DOI: 10.1039/C3OB27368G

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Nanoscience: Using DNA origami as a scaffold to assemble uniform length carbon nanotubes

Scientists in the US have developed a convenient, versatile method to organise discrete length single-walled carbon nanotubes (SWNT) into complex geometries using 2D DNA origami tiles. Constructing intricate geometric arrangements of components is one of the central challenges of nanotechnology. The origami scaffolds considered here, both rectangular and triangular, were used to organise the nanotubes: several arrangements of nanotubes were constructed, with defined tube lengths and inter-tube angles. This method allows for uniform tube lengths and positional precision, leading to the reliable assembly of SWNTs into well-structured arrays.

Graphical Abstract

DNA origami templated self-assembly of discrete length single wall carbon nanotubes
Zhao Zhao, Yan Liu and Hao Yan
Org. Biomol. Chem., 2013, Advance Article
DOI: 10.1039/C2OB26942B

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Chemical biology and medicinal: New anticancer compounds

Scientists in Canada have reported the anti-leukaemia activity of four new prodigiosin analogues in vitro in a cancer cell line and in vivo in a zebrafish model. Prodigiosin is the parent member of a family of tripyrrolic natural products isolated from bacteria.

Graphical Abstract

Investigations regarding the utility of prodigiosenes to treat leukemia
Deborah A. Smithen, A. Michael Forrester, Dale P. Corkery, Graham Dellaire, Julie Colpitts, Sherri A. McFarland, Jason N. Berman and Alison Thompson
Org. Biomol. Chem., DOI: 10.1039/C2OB26535D

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Organic: Anticancer compound’s analogues exhibit potent cytotoxicity against cancer cell lines

Scientists in France and Lebanon had previously synthesised and evaluated the biological properties of a series of 1,1-diarylethylene analogues of isocombretastatin A-4, which is related to the natural combretastatin A-4, an antitumour agent. Now, they have studied the effects of structural modifications on the linker between the two aromatic rings of the isocombretastatin A-4 to better understand the structure-activity relationships associated with this series of 1,1-diarylethylene tubulin polymerisation inhibitors. The new compounds exhibit potent cytotoxicity against cancer cell lines.

Organic: Anticancer compound’s analogues exhibit potent cytotoxicity against cancer cell lines

Organic: Anticancer compound’s analogues exhibit potent cytotoxicity against cancer cell lines
Abdallah Hamze and Mouad Alami
Org. Biomol. Chem., 2012,
DOI: 10.1039/C2OB26253C

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Molecular fossils: new compounds from 4900-year-old wood

If you dug up a wooden artefact, how could you tell what type of tree it came from? French chemists have identified unique molecules from an ancient piece of oak that could hold the key.

Pierre Adam and co-workers from the University of Strasbourg, France, used gas chromatography-mass spectrometry to identify triterpenoid molecules, which appear to be related to the natural product oleanane, in a 4900-year-old wood sample collected from river sediments. The discovered triterpenoids are unusual as they only have an oxygen-containing functional group at the C-2 position, while triterpenoids from living trees either have this at C-3 or both C-2 and C-3. This crucial difference could be due to chemical breakdown of the molecules by micro-organisms in the environment where the wood is buried.

The transformation is important, as the structure of the molecules identified today can be directly traced back to the natural molecules that existed in the living wood, so they can be linked.

Read the full article in Chemistry World

And read the OBC paper, highlighted as being HOT by the referees, for free here:
Triterpenoids functionalized at C-2 as diagenetic transformation products of 2,3-dioxygenated triterpenoids from higher plants in buried wood
Gilles Schnell, Philippe Schaeffer, Estelle Motsch and Pierre Adam
DOI: 10.1039/C2OB26191J

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Top ten most accessed articles in July 2012

This month sees the following articles in Organic & Biomolecular Chemistry that are in the top ten most accessed:

Recent progress of core-substituted naphthalenediimides: highlights from 2010  
Sheshanath V. Bhosale, Sidhanath V. Bhosale and Suresh K. Bhargava  
Org. Biomol. Chem., 2012, 10, 6455-6468
DOI: 10.1039/C2OB25798J

A new N-imidazolyl-1,8-naphthalimide based fluorescence sensor for fluoride detection  
Junqi Wang, Lingyun Yang, Chen Hou and Haishi Cao  
Org. Biomol. Chem., 2012, 10, 6271-6274
DOI: 10.1039/C2OB25903F

Asymmetric organocatalytic diboration of alkenes  
Amadeu Bonet, Cristina Sole, Henrik Gulyás and Elena Fernández  
Org. Biomol. Chem., 2012, 10, 6621-6623
DOI: 10.1039/C2OB26079D

Transition metal-catalyzed fluorination of multi carbon–carbon bonds: new strategies for fluorinated heterocycles 
Guosheng Liu  
Org. Biomol. Chem., 2012, 10, 6243-6248
DOI: 10.1039/C2OB25702E

π-Fused bis-BODIPY as a candidate for NIR dyes  
Mitsunori Nakamura, Hiroyuki Tahara, Kohtaro Takahashi, Toshi Nagata, Hiroki Uoyama, Daiki Kuzuhara, Shigeki Mori, Tetsuo Okujima, Hiroko Yamada and Hidemitsu Uno  
Org. Biomol. Chem., 2012, 10, 6840-6849
DOI: 10.1039/C2OB25930C
 
Enantio- and diastereocontrolled conversion of chiral epoxides to trans-cyclopropane carboxylates: application to the synthesis of cascarillic acid, grenadamide and L-(−)-CCG-II  
Pradeep Kumar, Abhishek Dubey and Anand Harbindu  
Org. Biomol. Chem., 2012, 10, 6987-6994
DOI: 10.1039/C2OB25622C  
 
From biomass to medicines. A simple synthesis of indolo[3,2-c]quinolines, antimalarial alkaloid isocryptolepine, and its derivatives 
Maxim G. Uchuskin, Arkady S. Pilipenko, Olga V. Serdyuk, Igor V. Trushkov and Alexander V. Butin  
Org. Biomol. Chem., 2012, 10, 7262-7265
DOI: 10.1039/C2OB25836F  

Chiral phosphine-catalyzed asymmetric allylic alkylation of 3-substituted benzofuran-2(3H)-ones or oxindoles with Morita–Baylis–Hillman carbonates  
De Wang, Yuan-Liang Yang, Jia-Jun Jiang and Min Shi  
Org. Biomol. Chem., 2012, 10, 7158-7166
DOI: 10.1039/C2OB25694K  
 
Diverted organic synthesis (DOS): accessing a new, natural product inspired, neurotrophically active scaffold through an intramolecular Pauson–Khand reaction  
Goverdhan Mehta, Ramesh Samineni, Pabbaraja Srihari, R. Gajendra Reddy and Sumana Chakravarty  
Org. Biomol. Chem., 2012, 10, 6830-6833
DOI: 10.1039/C2OB26107C  
 
Asymmetric synthesis of (+)-vertine and (+)-lythrine 
Laëtitia Chausset-Boissarie, Roman Àrvai, Graham R. Cumming, Laure Guénée and E. Peter Kündig 
Org. Biomol. Chem., 2012, 10, 6473-6479
DOI: 10.1039/C2OB25880C  

Why not take a look at the articles today and blog your thoughts and comments below.

Fancy submitting an article to Organic & Biomolecular Chemistry? Then why not submit to us today or alternatively email us your suggestions.

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Organic: Potential new anthrax vaccine

Scientists in France and Germany have shown that a simplified version of an anthrax polysaccharide can be used as a potential vaccine against Bacillus anthracis. The disaccharide analogue of the anthrax tetrasaccharide is conjugated to bovine serum albumin, with the aim to obtain an antigen able to induce specific antibodies.

Potential new anthrax vaccine

Link to journal article:
Organic: Potential new anthrax vaccine
Cyrille Grandjean, Ophélie Milhomme, Suzanne M Köhler, David Ropartz, David Lesur, Serge Pilard, Florence Djedaïni-Pilard and Wolfgang Beyer
Org. Biomol. Chem., Accepted Manuscript, 2012
DOI: 10.1039/c2ob26131f

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Chemical biology and medicinal: Potential agents to treat Alzheimer’s disease

Scientists in Germany have worked on optimising compounds that reduce the formation of amyloid β-peptides, which play a crucial role in the development and progression of Alzheimer’s disease. The team varied the membrane anchor, spacer and pharmacophore building blocks on BACE1 inhibitors to make tripartite structures (assembled by covalent coupling of BACE1 inhibitors with membrane anchors via suitable spacers).

Several BACE1 inhibitors have already been reported, but here, the team has shown that the cellular activity of small-molecule BACE1 inhibitors can be significantly increased by membrane targeting via a spacer with a raftophilic membrane anchor.

Optimisation of BACE1 Inhibition of Tripartite Structures by Modification of Membrane Anchor, Spacer and Pharmacophore – Development of Potential Agents for the Treatment of Alzheimer’s Disease
Hans-Joachim Knölker
DOI: 10.1039/C2OB26103K

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