Archive for the ‘Chemistry World Highlights’ Category

Sorting the good from the bad

Healthy and cancerous cells attached to fibres

Stress applied to cancerous and non-cancerous cells stuck to nanofibres causes the cancerous cells to become unfixed

US scientists have found a way to separate cancerous cells from healthy cells by taking advantage of their adhesion properties. Separating cancer cells for analysis is a critical step for determining the recommended course of treatment for patients.

See the full article in Chemistry World

Or read the Integrative Biology paper:

Plasma surface modification of electrospun fibers for adhesion-based cancer cell sorting
B. N. Blackstone, J. J. Willard, C. H. Lee, M. T. Nelson, R. T. Hart, J. J. Lannutti and H. M. Powell
DOI: 10.1039/C2IB20025B

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Diabetes reduces antioxidant benefits

Scientists in China have discovered that the blood plasma proteins of type II diabetes patients reduce the beneficial effects of dietary polyphenols.

Blood

Raised glucose levels in the blood of diabetics affects the structure of their blood plasma proteins, which prevents the proteins carrying healthy antioxidants to cells and tissues

Polyphenols are antioxidants and are found in chocolate and red wine, for example. In the body, they scavenge cell damaging free radicals. They bind to proteins in blood plasma, constantly switching between the bound and unbound forms. This may be how polyphenols are delivered to cells and tissues, but this is unproven.

Diabetics have raised levels of glucose in their blood. Glucose can also bind to plasma proteins, says Jianbo Xiao of Shanghai Normal University, who led the research. ‘Exposing plasma proteins to glucose influences their structures and functions,’ he says. So, to investigate this influence, Xiao’s team studied the polyphenol-binding abilities of healthy plasma proteins and compared them to the binding abilities of type II diabetes plasma proteins using fluorescence spectroscopy.

The team found that type II diabetes plasma proteins have an affinity 1 to 10 times lower for polyphenols than healthy proteins. ‘The non-covalent interactions between polyphenols and plasma proteins are usually caused by four major forces: hydrogen bonding, van der Waals forces, hydrophobic interactions and electrostatic interactions,’ says Xiao. The difference between the affinities was larger when more hydrophobic polyphenols were tested. There was only a slight difference in the affinity when the polyphenol’s ability to form hydrogen bonds was changed. So, the main force in the interaction between polyphenols and blood proteins is the hydrophobic force and not hydrogen bonds. It could be that as glucose alters a protein’s structure, it is this hydrophobic interaction that is altered, decreasing the binding affinity.

Ann Hagerman, an expert in the interactions of proteins and polyphenols and their bioactivity at Miami University, US, says that as research has been focused for many years on unmodified proteins, seeing how such modifications affect the interaction is quite interesting. She would like to see the work extended to other small molecules, using methods in addition to fluorescence spectroscopy to study the interactions.

Xiao’s team will now investigate why hydrophobic polyphenols cause a larger difference between the binding affinities of healthy and type II diabetes plasma proteins. The findings may affect the use of polyphenols in diabetes therapies, they say.

Glycation of plasma proteins in type II diabetes lowers the non-covalent interaction affinities for dietary polyphenols
Yixie Xie, Jianbo Xiao, Guoyin Kai and Xiaoqing Chen
DOI: 10.1039/C2IB00185C

Read the original article at Chemistry World

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Early diagnosis for Alzheimer’s and Parkinson’s

US scientists have developed a biosensor that could detect the early stages of Alzheimer’s disease (AD) and Parkinson’s disease (PD) by measuring low concentrations of protein aggregates in cerebrospinal fluid (CSF).

Neurodegenerative diseases are challenging to diagnose in the early stages as they have similar symptoms. However, on a cellular level, aggregates of the proteins beta-amyloid and alpha-synuclein have been linked to AD and PD, respectively, and so have been suggested as good biomarkers for each disease. ‘Pre-symptomatic diagnosis is a problem,’ says lead researcher Shalini Prasad from the University of Texas at Dallas. ‘Current diagnostic tests don’t have the level of sensitivity and selectivity to detect protein binding. Our goal was to see if we could do both at ultra-low concentrations.’

The biosensor is made up of a printed circuit board overlaid with a porous alumina membrane. The team attached nanobodies (antibody fragments that are specific either for alpha-synuclein aggregates or beta-amyloid aggregates) inside the membrane’s pores. When they added CSF to the sensor, the aggregates bound to their specific nanobodies, causing a change in capacitance that was proportional to the aggregates’ concentration. Using their sensor, the team measured aggregate levels in CSF samples from people with autopsy-confirmed AD, PD and control samples with no neurodegenerative disease. They found that the sensor could distinguish between the samples based on the protein aggregates present, suggesting that it has potential in the early diagnosis of these diseases.

The biosensor microchip integrated with a nanoporous alumina membrane and a polydimethylsiloxane manifold. The sensor can achieve diagnosis of target analytes in under 15 minutes

The biosensor microchip integrated with a nanoporous alumina membrane and a polydimethylsiloxane manifold. The sensor can achieve diagnosis of target analytes in under 15 minutes

‘This looks like a very promising technological approach to the diagnosis of Alzheimer’s disease and Parkinson’s disease,’ says Seth Love, an expert in nerve cell damage and death in neurological disease at the Dementia Research Centre, University of Bristol, UK. However, he adds that ‘the applicability of the findings to ante-mortem disease remains to be demonstrated. It will be important to assess the utility of this approach for diagnosis of early-stage rather than end-stage disease.’

Prasad’s team is now working on a multiplex detection array that will give even greater resolution in distinguishing between forms of dementia and are hoping to put their technology into use in pre-clinical studies.

To read Helen Potter’s original article see Chemistry World or read the full paper here:

CSF levels of oligomeric alpha-synuclein and beta-amyloid as biomarkers for neurodegenerative disease
Michael R. Sierks, Gaurav Chatterjee, Claire McGraw, Srinath Kasturirangan, Philip Schulz and Shalini Prasad
Integr. Biol., 2012, Advance Article
DOI: 10.1039/C1IB00018G

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Cell control to change cell function

US scientists can now control the reactions occurring inside cells. The technology could lead to the manipulation of cell functions in the future, they say. Cells could be triggered to release a therapeutic protein at disease sites, or could be stimulated to regenerate tissue, in response to external cues.

‘Cells respond to cues in their environment that influence or regulate their behaviour,’ explains Milan Mrksich from the University of Chicago who, together with Rafe Petty, carried out the work. ‘This is done by protein receptors on the cell surface that interact with ligands in the extracellular environment [outside the cell].’ For example, stem cells receive cues from growth factor proteins to become a particular cell type – a nerve, bone or skin cell.

Mrksich and Petty created cell-surface protein receptors and threaded them through a cell membrane so that the receptor was outside the cell and the protein within the cell. The team designed ligands to initiate and control phosphorylation reactions in the cell. ‘We could use this mechanism to signal a phosphorylation change in the receptor, which would be the first step in a series of molecular events that would lead to a change in cell function,’ says Mrksich.

Normally, when ligands are introduced to a cell, they bind to the receptors, causing them to dimerise. This brings the receptors closer together so that, with the aid of an enzyme already present in the cell, the proteins can phosphorylate each other. To control this effect, the researchers prepared a bead a couple of microns in size and attached the ligands to its surface, fixing them in place. As the ligands bound to the receptors, many receptors were brought closer together, increasing the phosphorylation rate.

‘The experiments provide further confirmation for the central role of ligand induced receptor dimerisation in cell signalling across the cell membrane,’ says Joseph Schlessinger, professor of pharmacology from the school of medicine at Yale University, US. But, he adds that research on how to make the synthetic receptor approach commercially viable is needed.

In the future, Mrksich hopes to regulate gene expression. If you can turn on or turn off the expression of a set of genes in a cell, you could control the cell function, he says. ‘So if we wanted to regulate gene expression in an animal, we could transplant cells that were engineered with our strategies with these protein receptors into an animal, have those cells function normally within the animal tissue in which they are inserted and then, when the cells see the cues that they are engineered to respond to, they would selectively take on a new function,’ he adds.

To read Elinor Richard’s original article see Chemistry World or read the full paper here:

De novo motif for kinase mediated signaling across the cell membrane
Rafe T. Petty and Milan Mrksich
Integr. Biol., 2011, Advance Article
DOI: 10.1039/C1IB00009H

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3D model to study breast cancer

Slice from the normal acini model after 12 days. Green: membrane, blue: nuclei, red: dividing cells

Scientists from the US have made a computational model of the formation of breast acini, the sac-like part of the milk-producing glands, to understand complex events occurring during the progression of breast cancer.

Jonathan Tang from the University of California, Berkeley, and colleagues, made a 3D model of acini formation, for the first time, to study how three different cell activities – apoptosis (programmed cell death), proliferation (cell division) and polarisation (organisation of cell components) – work together to form the tissue. In doing so, they hoped to determine how changes to these activities cause cancer.

‘We believed that such a model would enable us to identify which perturbations cause disorganised structures that resemble tumours, giving us a deeper insight into the complex nature of cancer,’ says Tang.

To read more, check out Elinor Richards’ Chemistry World article here or read the full paper online:

Phenotypic transition maps of 3D breast acini obtained by imaging-guided agent-based modeling
Jonathan Tang, Heiko Enderling, Sabine Becker-Weimann, Christopher Pham, Aris Polyzos, Chen-Yi Chen and Sylvain V. Costes
Integr. Biol., 2011
DOI: 10.1039/c0ib00092b

This article was published as part of a themed issue in honor of Mina J. Bissell.

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Channelling deeper to target breast cancer

US scientists have developed a model of the breast ductal system that could be used to discover abnormal cells or deliver drugs at locations further along the ducts than other techniques. The model fits on a slide, enabling on-chip experiments.

The human mammary gland consists of branched ducts with channels of decreasing size that are increasingly more difficult to access to obtain cell samples. This is because the channels get too narrow so the liquid inside them does not move around enough for probes to pass through to collect the cells. Now, a team led by Sophie Lelièvre and James Leary at Purdue University, Indiana, have mimicked the ductal system by making branched channels from polydimethylsiloxane (PDMS). They then moved magnetic particles along the channels through static fluid using a magnet.

The team coated the PDMS with extracellular matrix – a protein scaffold that supports cells. From this, they formed a tubular structure in which to culture mammary epithelial cells. Due to stress from the tube walls, the cells did not survive in straight tubes, so the team engineered U-shaped half channels, or hemichannels, instead. They were then able to culture cells on them, and covered the channels with a PDMS membrane to form tubes.
 

Schematic of the branched channel system 

Link to journal articleBreast on-a-chip: mimicry of the channeling system of the breast for development of theranostics
Meggie M.G. Grafton, Lei Wang, Pierre-Alexandre Vidi, James Leary and Sophie A. Lelièvre
Integr. Biol., 2011, DOI: 10.1039/c0ib00132e

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A tattoo to monitor health

A sensor to be injected into the skin just like a tattoo that measures sodium concentrations in the blood has been developed by US scientists. The sensor could be used to monitor diseases or warn against dangerously low sodium levels during exercise.

Heather Clark from Northeastern University, Boston, and coworkers made plastic nanobeads that fluoresce to different extents with changes in sodium levels. The beads are coated with a biocompatible polymer and are injected just under the skin to allow the fluorescence to be monitored easily.

Technology for determining the amount of sodium in the bloodstream has been available for some time. However, it requires a blood sample from the patient, which limits the measurements to isolated time points. This is a problem for understanding a condition called hyponatremia, where sodium concentrations in blood serum are lower than normal. Hyponatremia can occur after certain types of surgery, with brain trauma or tumours, and has been found in endurance athletes.

The team is developing a sensor to inject into the top layer of the skin that falls off after seven days, like a non-permanent tattoo

Read the full story here


Link to journal article
In vivo sodium concentration continuously monitored with fluorescent sensors
J. Matthew Dubach, Edward Lim, Ning Zhang, Kevin P. Francis and Heather Clark
Integr. Biol., 2011, DOI: 10.1039/c0ib00020e

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Artificially controlling cell division

US scientists have replicated a part of a cell, called a mitotic spindle, to better understand its role in cell division. If the spindle doesn’t function properly, the effect could lead to cell death, Down’s Syndrome or cancer.

William Hancock and team at Pennsylvania State University recreated a step in a process called mitosis using the artificial mitotic spindle. Mitosis is when a cell separates the chromosomes in its nucleus into two identical sets in two nuclei. The mitotic spindle, which consists of microtubules, controls the chromosome movement. Microtubules play an important role in the migration of chromosomes to opposite ends of a dividing cell. ‘This work is the first to organise microtubules in vitro into cell-like arrangements with the proper filament polarity and immobilise them in an experimental chamber,’ claims Hancock.

Microtubules are polymers of the protein tubulin. They are inherently polar and can organise themselves into complex geometries in dividing cells. Key characteristics of a mitotic spindle are two spindle poles, oriented microtubules overlapping at the centre, and motor protein activity along the microtubules. To recreate the spindle, Hancock made microscopic electrodes and coated them with proteins binding to one specific end of microtubules. The microtubules were then guided towards these attachment sites using dielectrophoresis and the attached microtubules were extended by additional polymerisation of tubulin.

The mitotic spindle controls chromosome movement in cells

Read the full story here

Link to journal article
Artificial mitotic spindle generated by dielectrophoresis and protein micropatterning supports bidirectional transport of kinesin-coated beads
Maruti Uppalapati, Ying-Ming Huang, Vidhya Aravamuthan, Thomas N. Jackson and William O. Hancock
Integr. Biol., 2011, DOI: 10.1039/c0ib00065e

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